Array 1 552511-553395 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015577.1 Campylobacter iguaniorum strain RM11343 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 552511 30 100.0 39 .............................. TGTTTGGGAGACGAGTATCGATGAGAGGGTATCAACTGG 552580 30 100.0 36 .............................. TTATCATTCCAATTTACCTTAACTACATAAGCATTA 552646 30 100.0 36 .............................. TTATCATTCCAATTTACCTTAACTACATAAGCATTA 552712 30 100.0 38 .............................. TTTAAGCTGAGCGATATAAATGCACTTAAAGATGAAAT 552780 30 100.0 38 .............................. TTTAAGCTGAGCGATATAAATGCACTTAAAGATGAAAT 552848 30 100.0 34 .............................. AGGCTAAATTCTATATTTTGCTTTTTCAGTCCTG 552912 30 93.3 36 TA............................ CGCCGTTATAGTAAGTTTCTATTGTTCCGCCATATT 552978 30 100.0 35 .............................. AGTAATAACGCTCAAATGATAGGTATTACAACTGG 553043 30 100.0 36 .............................. CTTGTTATGGATTACTAAACAATCCCTCATTAAGCA 553109 30 100.0 35 .............................. GCATTTCTTACTTTTCTAGCTATAATCTCTATAAT 553174 30 100.0 35 .............................. TTCCTTTATTTTTTACACTCGTTAAATTCTTCTAA 553239 30 100.0 33 .............................. AAAATCTTGCTGTAATTTTTCTTGAAAATCCAC 553302 30 100.0 34 .............................. AAATTTAATGCTTGGCTAATTTCGTATTGAGTAA 553366 30 86.7 0 ....................TT.....G.T | ========== ====== ====== ====== ============================== ======================================= ================== 14 30 98.6 36 GTATAAATTTATCCTTGTAGGATTTAAAAC # Left flank : ACAAATTTAATTCTATAGAAGATATTAAAAATGTTAAAGGTATAGGTGATAAAAGATATGAAACTATAAAAGCAGATCTATCTATAAATGGAGACAATGATATATCAAATTTAAAATCTAAAGGTAATAGTAGTAAAAAGGTTAAAGAGAAGAAAGATAAGATAAATAGCGATATTAAAAAAGATAGAACAGGTAAAGAGAAGAAGGATAAAGTAAGCAAGAGTAAGGTAAGCAAGGATAAGGGTGAAGGTAAATAGATAATATAGAATAAGAATAAGATGTATAAATATAAATCAAGATTAGATGGTTTTAATAGAATTAGAATATAAGTAAGAGGGGGATGGTAAAATCTAAATCCAAATAAAGCTATTTATAAGAAATATTAAATTTAGTAAAATTGGGTATATTTTTGTTTGTAAGTATATGGTTAAGCTTATTTAAAGTATAATAATATGCTGTATAAATAGATCAATTGCTTGTAGACAGAATATTTGATTGCT # Right flank : TAAAAGTCAAGGGGTTTTATCTTTTTTTTAAAAGAATATCTATTTTTCCCTTGATTTCTCCAAGAATTCTAAAAAACTCTTGACTTTTTTTCTCGAACTCTTCAAGTCTATCAACACGTTGATTAAGCAATTGCAACTTTTGATTTATGAGCCAATTTAAAGCAGTCAAGATGATTACAAGAAATGTTATAAGTGGCTCAATGTAGTTTAAAATATTCATTTATTAAACTGTTGGAGTAGCAGCAACACTTACAGAACTTAAACCGATTATATAAACTTCAGCGTATTTAACGTTATTAAAAGTTTTATTAAGAAGTGCAGTTCTAATCTCATCTTCATTTAATGAACCTTTAACGTAAAAAGTCATTGTGTGTTTATATCCAGTTTCATTTTTACCAGTAACAGTTACACGATTTACACCACCTTCGACGCCTTTATCGATAGGGTCTTTTGCTTGATAAATTTCATATCTTCCGTCCAAGTTGTTCGCACAAAATGTA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATTTATCCTTGTAGGATTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 601230-601716 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015577.1 Campylobacter iguaniorum strain RM11343 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 601230 31 96.8 33 T.............................. GATTTTGATACTCTTAAAAAAAGTCGTATTTTG 601294 31 100.0 33 ............................... AAGGTGGCAATACAGGTGAAAATCAAAAAATAG 601358 31 100.0 35 ............................... TAGCCATAGCACTTTTGATAGGGCTATAGATATTA 601424 31 100.0 35 ............................... TTGCTTATAAGCTTATCTTTTACAACCACACCTAT 601490 31 100.0 34 ............................... TTTTTGCTATTAATATCCCTGTCAAAAAGCTTTA 601555 31 100.0 34 ............................... ATGACTAATAATAGAAAAATAGCTAAGCTATTGC 601620 31 100.0 35 ............................... AATTTAACTCAAACAGAATACTTAACGATTAAAAA 601686 31 87.1 0 T.........................A.G.T | ========== ====== ====== ====== =============================== =================================== ================== 8 31 98.0 34 AGTGTAAATTTATCCTTGTAGGATTTGAAAC # Left flank : TTTTGAGATTTGAGCTTCGATTTTGGCTAGCTGCTCTTTTAGTTTGTCTAGCCTTTTTTGTAGCTCCTCTGCGGAGCTTTGAGATGAGTTAGCTTTGCCTACGCCACCACTTGCTCCTTGCATTGCATTTTCTTTTGTATTTGTCTTGGAGATTGATAAATTTCCAGTTGGACTACTTTGGCTGATGATTGTTGATAAATTTGTATCTACTTGCATCATCTTTCCTTAATTATTTGATATATAAATCGGTCAAATAGAATTGGTATTTATTGATTTTTGTTTTATTTTATGGTCGATTGTGCGGTATTGGAAAATGATGTAAATGCGAGTAAGGTTGAAGATGTACCTGACTTGTAGCGATTATAAAGCTACTTTTAAGCTTTAAGAGTAGTGATAAAATGGGAATTATGAGTTTGGTAAATTTTATTTTAAGCATATTTTAAATAAAATAAATATTGCAATTTTTAAATAAGGTATTGAAAATAGCTTTGTTTGTTTGC # Right flank : TTGCCCACATATCATATTCTATAAATCTAAAGTATAAATCCGCTTTTATTATCCTAGTCATAGCACAAAACCAAAAATCTACATCCAAAATACAAAAACGCAACTTTGCTGCATAAGATTTATACACATTATTGACGCAACAAAACCAAATATCAAATTCGCTATGTTACATTTCGTAACTTACACAGCATTTTCCATTATATTTGGCATTGTAGACTTGTGTATCTGCTGCTTATATGTGCTTTGCATGTGGTTTCTTTTCGCTTTATATTGAGCATTTTTACGTTTTTTAGTATTGTATTTCCTACTTGTATCGCACCTTCGAGCTTGGTATTTGGGCATATCAGCAAAAACTCGTCCCCGCCAAGCCTACATATCACATCATCAGTTCTTACAGAATCCCTCAGCGCTATAGCTACTGTTTTTAGTACGATATCGCCAGCGTCATGTCTGTATGTATCGTTTATTTCTTTGAAGTGGTCTAGATCCATCATCAAAAC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGTAAATTTATCCTTGTAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //