Array 1 504267-503771 **** Predicted by CRISPRDetect 2.4 *** >NZ_PENF01000002.1 Prevotella intermedia strain KCOM 2698 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 504266 36 97.2 30 .........................A.......... TGCAAAGTTACTCAAAATCAATTGATTATA 504200 36 100.0 30 .................................... AATTTCAAAATTCCTTTTTCATAATCTCTT 504134 36 100.0 29 .................................... TATACATTATAGCGATTTAGTTAGCCCCG 504069 36 100.0 30 .................................... TGCTTCACGCAACAATAGCACCTGCTTGTT 504003 36 97.2 30 ...................C................ TTTGTATTTGGCTTTCTGTCAATGGTTTCA 503937 36 100.0 29 .................................... GGATAGACACCTTTGCCTTGTAGAATTTG 503872 36 100.0 30 .................................... AAATGTGATTAAAGGTTTCTCGGTGCTTGT 503806 36 94.4 0 ..........................C.C....... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 98.6 30 GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : TGCGGAATGCCTTTTCGCACAACCAATATCCAATGTACAATGAAAATCTCTTCGGAAATATTGAGCGGTTCAGCCTTTCTTCTTCTAATATTATAGAAAGTAAGGGGCTCGATATTGCTGTGAAACTGAAAGAGGAAGTTAGTAAGGCAGTAGAAAAAATACAGAACGAGGAAGACGACAAAAAAGAAAAAGAAACTTAAAAACAAGATTATGGATAGTTCACTAATATAAAAAGGGGGCAATGTCGCTGATATTGAATACAGCAAGCACATCTATGTGCTGTTGCTTACTGCGAAGGACAAGCCCGACGAGACGATAGAAATAAAGAATGAGAAGCTTGGAAAGAGAATGATAGAAATTCATCAGAGCCTCTCAATACAAATCAGAAAAGATATAAATTTAAAACAACGAGATTTACAATTCGATAGTTAGAATGCGTAAAATGGGTGGTAAAAAGAAAGGAACAAAACATATAAAAATCAGACAGTTAGGTTAGGTGC # Right flank : TTATTAACAAGCAAGGGAATGGAATTGGGGGAAGTAAAAACGGAAGGGGGAACACGCCTTTCTATGGGTGAAAAAAGGCGAGAAAGGTGTAAATATTTTTCACAAGCAAAACTATTGCGTAACCACCTCGTTATCAGCGCATTGTAAAACCTATTGTTTTGCATTGCGAAAGCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGGTTTTTCTATGGAATTATCTTTACAAAACAGGAGTGGTTTTACGTCGTGGAAAGTGTAGAGGTTGTGGCGTGGTTTCGGACGGCAGCACAATGGTGGCTTTGCCGATAGTGCGACATCGGCAAGGGTGGTTGGGGCTTTTGCATCGGCTCGATGCGGTGGCTCGTTCGGTTCGGTTGGCTTCGGTTGATGTGCAGCGACGACAGGAAAGCCACTGTACAGAGCAAGATAAGATGTTTTCTCATATCGTTATC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 968855-966509 **** Predicted by CRISPRDetect 2.4 *** >NZ_PENF01000001.1 Prevotella intermedia strain KCOM 2698 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 968854 47 100.0 29 ............................................... AGTTGAGAATGTACCAACCGCCTTCTATG 968778 47 100.0 29 ............................................... GTGGCACGTTTGGACAAGTTGGCGTTTTG 968702 47 100.0 30 ............................................... TTTATGCACGTACTTTTCCGCAATATCGGC 968625 47 100.0 30 ............................................... AAGTTGATGCAGGGTTGGAATCCATGGATA 968548 47 100.0 30 ............................................... CTTCTTTGCGATTATCAACCCCGAAGATTA 968471 47 100.0 30 ............................................... CAAGGAAACGAGGACGCGGCAAGTAATTTT 968394 47 100.0 30 ............................................... GTTGGGGCTTTCATTTACAATTAAGAGAAA 968317 47 100.0 30 ............................................... AGATTTATCATTTATACGAATATCGACAGC 968240 47 100.0 30 ............................................... AAGATTTAAAAATAGAATTTCCGAACGAGG 968163 47 100.0 30 ............................................... GTAACAATTTCTCCAGTTGCTTTTACTCTT 968086 47 100.0 29 ............................................... AAGCGTTTTTTTTGACGCTGATGCGCTTG 968010 47 100.0 29 ............................................... GTACGAAAAAGGGCAAAAGGTGCGCTTTG 967934 47 100.0 29 ............................................... TGTCAATAATACGTTGTATATCTCTGTTG 967858 47 100.0 29 ............................................... TAACAAGCTTATTTCAAACTTCACACGGT 967782 47 100.0 29 ............................................... ACAAAGAGATGGTGGGCTTGAAAGCCGCT 967706 47 100.0 30 ............................................... CGAAGCCTTGAACCCAAATATTTTGGGTAT 967629 47 100.0 30 ............................................... AGAAAGAGCGCCAACAGCACCACTAGCTAA 967552 47 100.0 29 ............................................... TGTCTAAAGAATTGACACACAAGCCGTTA 967476 47 100.0 29 ............................................... CAAAAATAGCCGTTAGGATAAATAGAAGT 967400 47 100.0 30 ............................................... ACTTTGCGCAGCGTTAGAAGAAGCGGAGGA 967323 47 100.0 29 ............................................... TTCCAAGAAGCAATAAAGCTATCATAATA 967247 47 100.0 30 ............................................... CAAGTGATTACTACTATCATCGTTCAAATC 967170 47 100.0 30 ............................................... ACATAATTAGGCAAGTGCCAAGTTCGCTAA 967093 47 100.0 30 ............................................... AACAGGGACGGCTCTATGGCATCACCTTCA 967016 47 100.0 30 ............................................... GATATCAGCCTTGTATGTAACTACATGAAC 966939 47 100.0 30 ............................................... GCTAAAACAAAAATATAAAACATGAAAACT 966862 47 100.0 30 ............................................... GAAAAGCAATGTATTGATAGGTGAATACCA 966785 47 100.0 29 ............................................... TTTTTTCGCAGGGATAATTGTTGCATCAA 966709 47 100.0 30 ............................................... TAGTGGAGAGGTTGAATATAATACATCTTT 966632 47 100.0 30 ............................................... AAAGAAATTGACAATAAGCGAATGGAACGA 966555 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 31 47 100.0 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGTAAATACAAC # Left flank : CGTGTTTTATTTTCAGTGGTTGCATACCTTCATTTGTTAAAGTCTGAATATTCGTTAAATCGACTCCGCGACTGTTAAATTTCAAAGCCCCAACTTCCGAATTACGGGCACTTTTCTGCACTTCAAATTATTTATTTGCAAATAACGTCATTATTTGCGTGCTATCGTAAGTGCTTGACTCATAGTTTCTTGCAAGCTTATTGGGTAGTGTTGTGCAACGAAATTACACTTTTTACGTTGTAAAACGAACACTTTTATTCGTATATAGGTTATATTTCTCGCTCCTTCATCATCTTTTCGCTCTGTAAAAGTGCCACTTTTGCAATCCAAAAGAGCCGCTTTTGCACGGTAAAACCTATTGTTTTGCATTGCAAAAGCGGCTCTTTTACTTTTCCACCCCTATTTTTCCTCTCTCTTTTCTCTATTTCCCCCTTTCCGCTTGTGTTAAATTTATTGCCCCATTTACTTGATTTTAGAACAATAAATCGGAAGTGTCGTTA # Right flank : TCAAATGGCTTAAAGTAATTAACATCAGTGTTGTTACGAAAGCTTAGAGAGAAAGAAAAATGCAAGCAAAATAAAGTTCCACTCGTTAAGAATGGAACTTTATTGTTTCTAAAAGAAGGATTAAAAGAGCTCTAATTGTGCTCCAGGTGCATTTGGTTTTTGTGGTTTCTTACCATAGAATAGCTTTATTTCTTCAAATTGTTTGTCTGTAATGCCCATTATTCCAACTTTTCCGTATGCTGGAATAAAGGTGGAAACTCTTTTAATATGCACTTCCATATTTTCTTTACTACCACAGTGGCGTATATAAATGGAGAACTGAAACATTGTAAATCCATCTTTCAGCAAGTTTTGACGAAAGAGTGAAGCTGCTTTTCGTTCTTTCTTTGTATCTGTGGGTAAATCAAAAAATACCATTAACCACATACTTCTGTATTGACTAAATCTATAAGTTTCCACTAATAGGCTTTATAATTCAGGATAAACCATTCTTCTTTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGTAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.47%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //