Array 1 60743-60055 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGM01000001.1 Yersinia pseudotuberculosis strain 19-YE00067 NODE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 60742 28 100.0 32 ............................ TGCTCCTCGTTCTGAGACAACGAAATTCAGTA 60682 28 100.0 32 ............................ TGAAACAATAGCAAACAATAATTCAGGTATTC 60622 28 100.0 32 ............................ TGTAGCTGTAAATCCAACTGGCATTGGAGGAT 60562 28 100.0 32 ............................ ACCCACACGCCGCCTGCCCATTCGCCGGTAAC 60502 28 100.0 32 ............................ GATCTACTTCGCGATACCGCCCATCGCTGGCT 60442 28 100.0 32 ............................ ACGTAATCCACAACGAAATATAATCTAGTGCT 60382 28 100.0 32 ............................ AATCATCAGTAACGTGTGTTCTTTCCACAAGA 60322 28 100.0 32 ............................ ATTTGCATAAACTTCACACGCTCGACTTAAAT 60262 28 100.0 32 ............................ ATAGTGCCGGGGCGATGACAAGAGCAGTGATC 60202 28 100.0 32 ............................ GAAAACGGAACATTACAATCCGGCGGATTACA 60142 28 100.0 32 ............................ GGTCAGACTATGCGCGATGGATTGATTAAAGT 60082 28 92.9 0 ........................T.G. | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CATTCAGGTTATATTTTATCAGGGATAATAGGTGAAATAGGGGGGAGGGGCTAATGGTAAAAAGCCTCTTATTGATCCAATATATAATAATTCAGATAAAACGCGCATTGATTAGGATGTTTCAGACATTCGCGTGGGAATTTTCTTACTTTCATCACAGGAACCTCATTAGAGCACGCCAATATTCTTTTTTAATGTACCTAATAACCTCATTTAGTTAATAATCCAATTGACCTGAACCCTAAAAACGAAGCTATGGCAGAGTCATGCCCTGAGAGCGTTTCAGGGCGTTGGTACAGCAGATGATAAAGATCACGATAATAACGCATGGGGATTCTTAGCCTATTCGCATCAGGGGAATCATTTTTTGACCCTATTTTTTTAGCTATGGCTAACTCATTGATTTTATATCCTGCTTACCGAGGGTTAAAAAAAATCATTTTTTACCCTTTGGCGAAAGAATTATTTTACAAACAGTCTGTTACCCGTATTATCTTACT # Right flank : GGGTCACTGTTTGTGCACCAGCGCGGCCCCGGCCTGATCCTCTTGCTGGTAGGCCAACGCCACGACCAACGACTGCACCAGACAGAGCGTGGCTGATTGAGATCGGAAGGCATCTACCTGAGCCTCTTTCACCACAAAACAGAGATCGCTGAACGTGGCGAGCGGGCTTATCTGGCTGTCAGTAATGACAATCTGCCGGGCACCCGCGCTAGCGGCTATTTCACTGACCATCACGGTCTCTTCGGCGTACGGAGAGAAACTGATAGAAACCACGATATCGCGTGCTTTAATGCCGTTCACCTGCTCACGTAACATCCCCCCGAGGCCATGGAGTTGCACCGGGCGACATTCCAAATGGCTGAGTGCGTAGGTCAGATAGGCGGCCACGCTGAACGAGCGGCGCAGGCCCACCACATAAATGGTATCGGCCTGAGCAAGTAGTTCCACCGCGCGTTGCAGCATCTCTGGTTCAGTACGTGCCGCCAACTGTTGTAGTGCCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 136306-133573 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGM01000011.1 Yersinia pseudotuberculosis strain 19-YE00067 NODE_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 136305 28 100.0 32 ............................ GTTAGCGCCACCGGTCTTAATAACGCTACAAC 136245 28 100.0 32 ............................ AATTAAATAAGGTAAATAAGGTAGCATGTTAT 136185 28 100.0 33 ............................ AGATATGGAAGAAATAAAAGCGGATTTTTCTAT 136124 28 100.0 32 ............................ TGATGCGTTTCATACAATGACTGTACGTGTTT 136064 28 100.0 32 ............................ TCACGAGTTTTAACATAAGTAAATGTACTACG 136004 28 100.0 32 ............................ AAAGAGAAGCCCCTCATTATGAATGATCGGTA 135944 28 100.0 32 ............................ AAACTACTATTAATTTATTAACTCAAAATGTC 135884 28 100.0 32 ............................ TCGTTGAAAGAACACATGTTGATGATGATTGG 135824 28 100.0 32 ............................ ACTAATGTTTATATATCTTTAATATCTGAGGA 135764 28 100.0 32 ............................ ACCATAAAATGTATGGTTATATGATTTTACCC 135704 28 100.0 32 ............................ TTGTAGCTTTAACACTAGCAGAACTACCGACG 135644 28 100.0 31 ............................ TGTAGACGCTTATGCTCAGGTTCTACTAACA 135585 28 96.4 32 C........................... AACACGTTGGATGAATCACAACAGTTAATTAT 135525 28 100.0 32 ............................ AGCCACGTTCTCCCACCGGTACGGCGATAAAT 135465 28 100.0 33 ............................ CCACAGTATCATTATTATGACCGATGCCGACGT 135404 28 100.0 32 ............................ CATATAAACCGGTTATTTCATAAAGATTTTTT 135344 28 96.4 32 A........................... ACCTCGTTCACCTGAGCGTTTGACTTCAATAT 135284 28 100.0 32 ............................ TATGTAGATGCTTTAAAAGGAGTGAAGAAAAC 135224 28 100.0 32 ............................ AACACGTTGGATGAATCACAACAGTTAATTAT 135164 28 100.0 32 ............................ TTAAAAGTGATGCTAATTCAGGAAGTGCGGAT 135104 28 100.0 32 ............................ AGTCTGGCGGCGCATTATCTGGTTTTATGTAT 135044 28 100.0 32 ............................ ATATTAAACCACACGATTCAACTACAAAAATG 134984 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 134924 28 100.0 33 ............................ AGCAGCAATGGGATGAAATTAATAATATTAAAA 134863 28 100.0 32 ............................ TATCTGGAATCCCAGAAGTATTATTAGCTATT 134803 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 134743 28 100.0 32 ............................ GTGTCAGCTTTTAACGCATATAATGAACCAAT 134683 28 100.0 32 ............................ TCGGAATACAGATTATTGCTGGTACTGTCAAC 134623 28 100.0 32 ............................ CGCTAGACGCTTCATTTTTCATTGTAACTCAA 134563 28 100.0 32 ............................ AAGTTAAACAGTATGTTGACGATGAAATAAGT 134503 28 100.0 32 ............................ GAAAATCACATTGCCGGCGTGGATGAACAAGG 134443 28 100.0 32 ............................ ACCAGCCTCCCAGCTCATAACCGTACGGCCAA 134383 28 100.0 32 ............................ TGTAAATACCCGGACAAACAAGACAACTCCTG 134323 28 100.0 32 ............................ CTCCGGAGTCACAACCATCTCAGAACAGATGT 134263 28 100.0 34 ............................ CCAGATTTGATTGGCGTGGGTTACTACGTTGAAT 134201 28 100.0 33 ............................ AATTGACACTAGCACGTTACTTAATAGTCAATA 134140 28 100.0 32 ............................ TTTAGATGCCCGATCTAATTCCTCTTGGGCTT 134080 28 100.0 32 ............................ GCATAGTTAAGGGGTAAGAGATGAAAACTGAA 134020 28 100.0 32 ............................ ACCCAACCTCAAAGCTGGATGACAAGCGCAAA 133960 28 100.0 32 ............................ AGTGGTGATTACGCAATGCAGCAAACATATAA 133900 28 100.0 32 ............................ GTGGAATGGCTATTGCTATCGCTCGAGAATAT 133840 28 100.0 32 ............................ TCGCGAACGCGCTCAGGTTCACGGAATGGCGA 133780 28 100.0 32 ............................ ATCTGCGCCAAAGAAAATGCCATTCAGATAAT 133720 28 96.4 32 .........T.................. AACTACTAGAAGCTTGCCCATCTTACCTTTTC 133660 28 100.0 32 ............................ ATCATGAAAGACATTGTTCGCCAGTCCCCTGA 133600 27 85.7 0 ...................A-.A.T... | C [133576] ========== ====== ====== ====== ============================ ================================== ================== 46 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGGTTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TTCTGGACCATGCGCTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 82779-83106 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGM01000014.1 Yersinia pseudotuberculosis strain 19-YE00067 NODE_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 82779 28 100.0 32 ............................ TGCTGAGATTCCAGTATTCTGAATTAATTTAC 82839 28 100.0 32 ............................ GTATAATTATTAGCATTATTTAATGTTGTTTG 82899 28 100.0 32 ............................ GAGCATTCCGCGCTCGTCACGCGCCCTTACTG 82959 28 100.0 32 ............................ GGTATCGACAAACAGGCACATATACAGTTGAT 83019 28 100.0 32 ............................ TTACACGCTGGACGGCCAGGGAGACGAGAGCT 83079 27 89.3 0 .....................CC.-... | T [83105] ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //