Array 1 38721-37777 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUH01000062.1 Methylomonas methanica strain R-45371 contig_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38720 29 100.0 32 ............................. TATTGCCAACGGTGTTGGTGATGGTGTTTTTA 38659 29 100.0 32 ............................. CCAAAAACGCCAATCCCGGAAAAGCGGCGGCG 38598 29 100.0 32 ............................. AAAACCAGTCAGCTTTTTATTCAGACTTGTAT 38537 29 100.0 32 ............................. ACAGACACCACATTCCGCCGCGTCAGCCGTCA 38476 29 100.0 32 ............................. ATAAATTATTCATCTTAGAATATGGTAGACGA 38415 29 100.0 32 ............................. CGGTATTCCCTAAATTCGACGCAACGAATAAA 38354 29 100.0 32 ............................. GGCATTTCTTGAGGGCAATCGATGCCTAACTA 38293 29 100.0 32 ............................. AAAAAAGCAAAGGCCGCGCTTAGAAAGGCCCG 38232 29 100.0 32 ............................. TCTGGAACAGGCTCGGCGGTATCGATTACGCC 38171 29 100.0 32 ............................. AAAGAAGAGCGCAAAGAGCCGAAGCAAATAAC 38110 29 100.0 32 ............................. AATAAAACCAGAATCAGAAACGCCACGCCGCC 38049 29 100.0 32 ............................. ACATTTAGAGGTACGAGAGCGGGGGAGAAGGC 37988 29 100.0 32 ............................. CTGGCATCGTTTGCCGCCACCATCGTGCAAAA 37927 29 100.0 32 ............................. GCGGCCGGGTTAAATTCCATAGCCACGTCGTA 37866 29 100.0 32 ............................. GAGTTCTTAAAAATCGTTCCTCTCGGCAAATC 37805 29 89.7 0 ..........................TTA | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : CCGGCCATTCCCAACACAGAGAGTATCGGCGATGTTGGTCATCGTAGTTGAAAACGTTCCGCCCAGGCTGCGTGGGCGCTTGGCGGTATGGCTAATCGAAATTCGCGCCGGCGTCTATGTCGGCGACTTGTCTGCCAAGGTGCGCGAAATGATCTGGTCGCAAATCGAGGATGGCTTGGAAGATGGCAACGCGGTAATGGCTTGGTCCACCAACACCGAGTCCGGTTTCGATTTTATGACGCTGGGTAAAAACCGCCGCCTGCCGGTCGAACTGGACGGTTTAAAACTGGTGTCGTTTTTTCCGCTGGAAGATGCGGATTTGTCTCCCTAGCCCTCAGGGAGATGGCCGGGGTGAGGATAAAATGCGCACTAAATTCCTGCTGGGATATAGGGCGCTGTAAGCGGTTTCGTCGGCTTTTTAACAACTTGGAAAAGGCAAAAAATTCGGTAGAAATTTAGCCGGGTTATTTTTATATGCGTAACAATAAGTTACGATTAGT # Right flank : CTTGTTGTTGCCTTTCTGTGGCTCTGTTGCAAGTGTCGATACATGGTGTACGGGGGTTATTCTGCCGCAACGGGTATTTCTGATCGGATTACCGGCAGGGAAATTGCTAAAATGGCTTGTCGGCAGGCGAAGTGGATGATCTCCGGTATTCGTTGATTCGGTTCGTATTGGCTCGGTTCCCCGGGATTAGAAGAGGAATTTATATGATGTTGCAGCAAGGCTTCGCCGAAGTTAACAGGGTCGATGTGCCGGGTATGACGGCCTTAAGCGGCCGCAAATGCCGCGGATTTGCTGTTGTCATTAACTTGATATGAACAATATTCCACCCAAACGCGGTCTGGGCCGGGGGCTTGAAGCTTTATTAACCGATATGCCGGCTAAACCGGTAACGGATAAACAAAGCATTAAGGCTGATGCAGTGCAGGTGCGAGCTGTCCGCCAAGAAAATAGCCATTTGCTTCAAGAAGCCGAAGCGTTAAAGACCCTGTTGGAGGAGCTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 190079-190526 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUH01000062.1 Methylomonas methanica strain R-45371 contig_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 190079 28 100.0 32 ............................ ATAGTTTTGCAAACCGGACACACCGAAAAAAT 190139 28 100.0 32 ............................ GTCCTGCGCCATCGTGGACGAATACCACGAAC 190199 28 100.0 32 ............................ CTGGACAGGCGATTACCCGAACATTGGCCTGG 190259 28 100.0 32 ............................ AAAGACAACACGGAATCAAACGGCCACCTATA 190319 28 100.0 32 ............................ ATTTACAGTTTGATAAAGTGTCAACCCTAAGT 190379 28 100.0 32 ............................ TATTTATCAAGCCGACACGACCCGTTCGCGTG 190439 28 100.0 32 ............................ TACCGAAGTGCCTGAAGGATGTTTGATATTGA 190499 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTCCGCCGCCGCACAGGCGGCTTAGAAA # Left flank : CATTGCACCGGTGTCCGACCCGTACCCGACAAGCTGCTGGGATACGCGGTTTATCGGCGCGCGCAACCCAAGACCAACCCGGAACGATTGGCGCGACGCTATGCCAGACGCCACGGACTGGATTTGGCGACCGCGCTGAACATGACGGTGGAAGTGCGCGCCGCGGCGGAGAACGAGGCGTATCCGCTGGCGTTTCGTTATTGCGATATGCTCAAGCCTTCGGTGGCCTTGCCGTTTATTCGTCTGCAAAGCTTGAGTGGCGGTCAAACCTTCTGTTTATGGGTCGCCAAAACCGAAACCACCGCGCCGGTGGCCGGCAATTTCAACGCCTACGGTCTGAGCAGCGTAGCCACCGTACCGGAATTTTGACCCAAAATTTTCCGCTCTTTAACAATGTGAACTAAATCAGCCGGTTACGAACAACAGCTGTACGGATGGTAAAAACAGGTCAAACCGCCCGCAACCCTTGTCGCAACAGGCTTCCCGTTTCTTTATAATCA # Right flank : ATACAAATGTCTTAAGTGCGGGACACACTTCCTGGAAATTATGGCAACCGTTCAGTGACAGAGCAGTGGATTACGCGCCGATTCGCCATTTTTGCTGCATATCGCGGCCGAGACCATCTAGTCAGCACCGGAATACAGCCGCCCGCATGGTAGTTATATTGCTGGCCGCTATCGGTTTTTACCCGGAAATAAGCGGTCATCCCTAGGCCACCCGGTTTCTATCGTAAATTGGTTTTTTCCCACTCCCAGAGCCCGAACGGTTCTGTCCCTCAGGGCATCTTGAGTCACGGCACGCGCAACACAACCGCCGCTCAGTTTTTATTCAGCCACCTACAAATAGGCAGGGAACCCTACCAGAGTAGGGTGTTGGGACGCTAGGCAGGTTTGTTAACATGTATTTCGAAGTCCACTATTGGTCCGACAATTTTAAACAGGAATTTGCCATGAAAATCAGTCTGAAATCCCTTGCACTAGGTTTAATACTGCCGGTATTGCCGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //