Array 1 159758-158746 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIWA01000010.1 Streptomyces sp. CB01883 scaffold10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 159757 29 100.0 32 ............................. ATCGGCGGCCCGGTGTCGTAGGCGAAGCTGAG 159696 29 100.0 32 ............................. GGCACGCCAACGACGTACGAGTGCGCGATCTC 159635 29 100.0 32 ............................. CCGCAGCGCAGCTGCCTGGTGATGGTCGCGAA 159574 29 100.0 32 ............................. CCCATGGACTACCGGGACATGTACCGGTGGGA T [159548] 159512 29 100.0 33 ............................. GAAGCCGAGGACCAGGCCAACGTCAACGCCAAG 159450 29 100.0 32 ............................. CGCCAGCTCGTCACGTTGGCGGGCGCGTAGAA 159389 29 100.0 32 ............................. AGGTAAAAGTCTTCGCCCCACTCGTCGCCGTT 159328 29 100.0 32 ............................. GGGGCGGTCGGGTAGGCGGCGACGTCGGTCTG 159267 29 100.0 32 ............................. GAGCACCCCGACGAGCTGGAGCCGACGTCGGC 159206 29 100.0 32 ............................. GCCGTCATGGCGCTGAACCCCTTCGTCCTGGT 159145 29 100.0 32 ............................. TGGTTCGACGTCGAGGCGTGGGCCCGGGAACT 159084 29 100.0 32 ............................. TCGGGCAGAGCCTGTAGGGCGTCGAGGAGGCT GCGCGCA [159067] 159016 29 96.6 32 .............C............... CGGCACGACGATGGACTACCTGTCCGCCGACA 158955 29 100.0 32 ............................. ATGTCGATGGACCAGTTCAACGCCGCGATCGG 158894 29 93.1 31 .............C.....A......... GGCCAGGGGCCTAATCCCTGACCGCTTCTGA 158834 28 96.6 32 ........-.................... GCCACCCGGGACACCACGCTGTACCGGTCGGC 158774 29 93.1 0 .....................G......T | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : ACCCCTCACCAGAACGAGAAAACACGCCCACCCCAACCAACAGCCCACTCACAGACGCCGACGCACCCCCGACAGCCCCCCACCACCGAAGAAGATGCACGGCATAGGCTCACCACCAGAGCATCCAGACCTCGCGAAAAAGCACACTGCCAGAGAAACCCTTTTGGGCAGCTTTTGTCCGCTTCCAAGAAAGTTCACGAAAACGCCCACCCCAGCCATCAACCTCGCAGGTCAGCCAGCCTGCTCCCCGCACGCGCGGGGATGGTCCCCCTCAGGGTTGTACGCCCGACCGAAATCGTTCCTGCTCCCCGCACGCGCGGGGATGGTCCCAACGACCGCCAGTACCCGGCCTACCAGCTCAGCTGCTCCCCGCACGCGCGGGGATGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGCGCGGGGATGGTCCCGACAACGTCATCGCCCGCAACGTCAGCTGCGG # Right flank : CGGATCCCGCGGTGAGCACGTCGCGCTCCGGGATGCGGGTGTTCCTCAGCGCAGCAGGCGGCGGACGGCCCGACGCAGAGCCAGGGCGCGGAAGAGGCAGGGCAGGGCGTAGGCGCCGAGGACGGGCGTGGCGATGAGGACGAACGCGGCGACAGGGCCTGTCCAGCAGGAGAGGAGCAGCGCGGTGCCGATGAGCAGGAGCAGTCCTACGGTGACGGCTAAGGCATGCTCGCCGGCCGCGTCCTGGTCGTGCATCCCGTCCTCAGGGGGGTTGGTGATCGTAGGGCGCACGGTGGTGTCAGGGGTGCTTGTAGCCGGTGGCGAGGTGGTCGCCGGCCACCCAACCGCGGAGCCCGTTGCGGGGGCCGGACTCCACCACGCCGTACGCCCACCAGACGTCTGTGGCGGTGATGCCCCAGCACTCGGCGTAGAAGTCGGTGTTCTTCGCCAGGACGGCCAGGGAGCGGTGGCCGGTGCCGCGGCCGGCCCTGAGGTGTACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 169980-171133 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIWA01000010.1 Streptomyces sp. CB01883 scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================ ================== 169980 29 100.0 32 ............................. CAGTAGCCCAGCTCGCTCAGGTTCCGCTCGAC 170041 29 100.0 32 ............................. ACTCCCGGGAGGCTGCCGCAACGGTAGGGCAT 170102 29 100.0 32 ............................. GTCGGAAGCGACTGCTGCGACGTTCCGATGGT 170163 29 100.0 32 ............................. CAAGACCCTGTCCTCGTCATCGACTACGGCTC 170224 29 100.0 32 ............................. CACCAGCCACCCGTCACTTACCGCCCGGACTG 170285 29 100.0 32 ............................. GGCAACCGCATCAAGATCGGCACCTCCACCGA 170346 28 96.6 32 ....................-........ CTGATCGGGCTGGTATCGGGCGCGTCCAAGGA 170406 29 100.0 32 ............................. CCGAGCCCGAGCCGGATCCGGCACTGGACTCG 170467 29 100.0 32 ............................. CGGCGCCACCCCTAGCGGGGGCGTGGCCGGCG 170528 29 96.6 32 ............................G CCTCACGACGGCGTCACCATCCGGGACCTGTA 170589 29 100.0 32 ............................. CGCGCCTACCGGGTCCTCAAGATGGAAGGACT 170650 29 100.0 32 ............................. TCGGCACGGCCCGCCGGTGGGGCCGCGCGATC 170711 29 100.0 32 ............................. GTCAAGGATCAGACGGAGGCCCTGGCACAGGC 170772 29 100.0 32 ............................. TAACCGAAGGGTTCCGCCATGGCATTGCCGGC 170833 29 100.0 32 ............................. CCGCTCAACAACGCACGGGCGGCGGCCGTCAT 170894 29 100.0 32 ............................. GAGATCGCGTACCTGCGGCACCGCGTGATGTA 170955 29 100.0 32 ............................. TTCTTCTCCAGAACGTCGACTTCCGCTTCCAG 171016 29 100.0 60 ............................. GAAGCGGTTCCGCTCCTCCGGCGGTCCCGGCAGCTTCTCGTCCACCAGGTGCTCGAGGAC 171105 29 86.2 0 ........T........A.......C.G. | ========== ====== ====== ====== ============================= ============================================================ ================== 19 29 98.9 34 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CAACCACGACGGCCCGCACGACTACGAGGACATCAGCTGGTGACCGTCATCGTCCTCACCAACTGCCCCGCAGGCCTGCGCGGCTTCCTCACCCGCTGGCTGCTGGAAATCTCCGCGGGCGTGTTCGTCGGCAACCCATCAACCAGAATCCGCGACGTGCTGTGGGAAGAAGTGCAGCAGTACGCAGGCCAGGGCCGCGCCCTGCTGGCCCACACCGACAACTCCGAGCAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCATCCGACCGACCACGAGGGAGTCACCCTGATCCGACGCCCCGACGCCCCGACGCCCCGACGCCACCGCGCGTGCAACGGCCCCGACTCCGAAAGCGGGCCGCCATCCGGTTGGAGCAGGGCCGCAAAAAACGCCGACGCTTCGGCCGAGGCTAAGGCGAGGTGTCTCATATGTCGGTATCGGCGAAAGTGCTGAAAAACCTACCCCTGCACAGACAAAGCCGCAGGTCATTCAGT # Right flank : CTCCGGCCCCTGTCAGCCCCGGACGACGGCTGTCTGCCGCTCCGGCCCGACGGTCCGATTCGGGCTCCGTGCTGATGTTTAGTGCTCTTCTTTACGCCCGGGGAGAGGCGGGGCCGTGCCGTCTTGCGCGACCCCGCGTTAACCGCTGACGGTGGCCTCCGGTCAGCGGTCCTGTGGCTAGGGCGTACAGCTCGCCGAGGAGACTTCCCTCGGTCGCGACGAGGTCGTCGAAGCAGCCCTGTTCCCGGACAGTGCCCTGGTCAAGGACAATGACCCGGTCGGCCATCCGTACATTGTCCAACCGGTGCGTGACCACAACGGTGATCCGGTCCGGTGCCATGGCCCGCAGTTCCCGGAAGATCTGGTGCTCGCCGCGGGCATCCATCTCGCTGGTCGGTTCGTCCAGGACGAGTACGGCCGGCTCCCGGTACATCGCCCTCGCGCACGCCAATCGCTGCCACTGGCCCCCGGACAGCTCGTGGCCGCCCCACACCGACCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //