Array 1 201-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCK01000214.1 Pseudoalteromonas citrea strain S2233 S2233_S26_L001_R1_001__paired__contig_214, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 200 20 71.4 32 --------.................... ATTACGAACGCTCCGCCCAGCCACCATCTCCC 148 28 100.0 32 ............................ AATAGGAGTTATCTTGTTTTATCTGATTTCGA 88 28 96.4 32 .........A.................. AATTTGAGAGATATTGTAAAAGCTGAAATCGA 28 28 92.9 0 ..A......A.................. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 90.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CACT # Right flank : A # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : CGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.89%AT] # Reference repeat match prediction: R [matched GTTTTCTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 71732-71210 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCK01000047.1 Pseudoalteromonas citrea strain S2233 S2233_S26_L001_R1_001__paired__contig_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================== ================== 71731 28 92.9 32 ..........G..T.............. GTATTGCGCGCCGTGATATTTGTCTTTATCAA 71671 28 78.6 106 ..C.......G..T...........GTG ATGAGTGACCGAAACGAAGTTTCGCAGCGCGAAGAAGTGAGGTCATGGATGACCGATGTAACCCAGCTCCATGGACGGATTTAAAACGCTGAGGTTAGTTTTATCT 71537 28 89.3 32 A.........G......A.......... ATTGTGGTGTTACAGTCCAAATGCCGGTATTG 71477 28 100.0 32 ............................ ACCAGATATCGCTGTTCTTTGCCCTTAAACTG 71417 28 75.0 32 .....A...AG..T.T.T...C...... ATTAGTCGTCTAGCTCTTTGTCTAAACGTCGG 71357 28 100.0 32 ............................ GTAGAATGTGACTCTGTGCCACTCGGTTTTAT 71297 28 96.4 32 ..........G................. ACGAGGTAGACGAAGAGTTAAAGCAGATTAAA 71237 28 92.9 0 ..........G....A............ | ========== ====== ====== ====== ============================ ========================================================================================================== ================== 8 28 90.6 43 GTTCACTGCCACACAGGCAGCTTAGAAA # Left flank : AGCATAGGCAGCTTAGAAATAAAGATTTCATTCGCCCTCTCCGTACTGAA # Right flank : ATTCAACCAAGAAACGCTCACAAGCAACTGCAGTTCACTGCCGCACAGGCTGTAGTGGGTGCTTTATGGACCCTGAAACAAGTTCAGGGAGACGAAGGGTGGTTACGTTGTGTATGCGCGCGGCATAAAGCTTTTCCAACGAGTGAGGTCCCACACAGTTTGTCTTTCTGACGCAGGTCAGAATCTACTGAGTAATAAGCGCGGCATAAAGCCCAGCCAACGCGTGAGGCACCATACAGTTCGTCTTTCTGACGCAGGTCAGAATCCATGGTTTTAAAGTGTTTGCTTGCAAACCCAGATGCAAAATGGTGCGTCGAGTACGCAAATACAATTTTCAAAAACGTTGATAAATACTTTAGAAAGCTATCAATATGGTGGCGGTGGTCGCTTTCATGCGAGTGCTTAATTAGGAGGTAACTGAGGGCGCTGTTTGGGTGCGCCCTGTTATTGATCACGCTATTTCATCACAATAGTACTTTGTAGCGCAAATGTGCCGTGTT # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 318-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCK01000061.1 Pseudoalteromonas citrea strain S2233 S2233_S26_L001_R1_001__paired__contig_61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 317 28 100.0 32 ............................ TTTTCAAAGCTGATTTTGAACTTTCTCAATAA 257 28 100.0 32 ............................ ACTCTCGTTTAATCTCGAAATTACCATTGTAT 197 28 100.0 32 ............................ GTTAGGTTTTGTGATTTTGCTTTTGTAAATAC 137 28 100.0 32 ............................ ATCAAGCGCATCGCGCCCAAATTCTAGACTGT 77 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAACATAACTATTTGAATCAGCATAAAGGCGCTGACGACACACAATTGTGCCCAATTGCCTTACTCATTTCAGATATTCGCCACCGAGATCCAGCCATTCGAGAAACGTATGAAAAAGTGTTTGCAGGGTTTGTAGAGTATATAAACAGCCATGTAAACGAGCGCAGCGCCGCATTAGCGCAAGCAGCCACCATGATAGGCGCAGTCGCACTGGCGCAAACCTTAACGGACGAAAGCTTAAAAGCGGAGTTACTCGCCGCATGTGAGGCCGCAACTCGGTGTGAACAAGATTGATATTATTGTACGTAAATTCCGATATAGCACTTCAGCGCACCTTATGTCATGATGGGTCTGGTTAGGCTAAAAAACACCCTATAATTTTCGCTCTTTAAAAAATGCTGCTAAATCAGAGTGTTAAATAATGGCGCATTGTATAAGGTAAAAACACCAATTTAAATGTAACATATTGATATGCATTACCTTGATGTAAAAGTCGCATT # Right flank : AGTCCGTTTCGTTTGCAACCAACAGCGCTATTTGTTCACTGCCGCACAGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17162-16654 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCK01000064.1 Pseudoalteromonas citrea strain S2233 S2233_S26_L001_R1_001__paired__contig_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 17161 28 100.0 32 ............................ ATACTCTCAAATTGCTTCAAAGCATACATCGC 17101 28 100.0 32 ............................ CCACGAGTTAAGCGCATAAGCTCACCTGTTGC 17041 28 100.0 32 ............................ TGACATATCAACTATTGAGCTGGCAACCTCGG 16981 28 100.0 32 ............................ ATCTATATATGATGTGTACGTATCACCAAGAT 16921 28 100.0 32 ............................ TGTGATAATTTTATGGCGATACAAAACTTCTT 16861 28 96.4 32 .............T.............. AGCGTAAACTGGCTAAGGTGGAAATATATGAA 16801 28 100.0 32 ............................ GCAATATTCAACAAGTACCGCCGACCCGCGCT 16741 28 100.0 32 ............................ ACGCTAGGAAGTGATTGAGCTTAATATTAGGG 16681 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGAAAAGGCGCGAAAGCGCCTTTTTTGTGGGTGAATAATAAAGTCCTCTCCCACATTTTTTGTGGGTGATTTCAATACCCACATATAAAGTGCAGGGCTACATTTTTGGTAGGAATAAAGGAATCCATTTCATACTGGGCCATAAAGATACGGAGCGCGCTGTAGGCGAAGGTTTACCCTTCGCTTTTTTTCGTATAATTAGGAAAAAGAGCGATGGAGTGAATGGCGCGCAGTTTGTTTTGCACCTTCTCACACCGATCAAAGCCCAATGCCTTAAGCACTGTAATTAATATTTAACGTAGCTATAAAATCATCCGTGGCGATCTGCAATCATTCGTGTCATTATTTGTTCGAATAGGTGGAAAAACATCCTTTAATTTTTAGCTCTTTAAAAAGTCCATATAAAACAAATGCCTATATTTTATTGTTTTTTGAAGGGTAAAATGTAAGTTTTATTAGTAACGTTATGATTTAATTTAACTTTACCAAAATAGTTCATT # Right flank : ATGAGTGACCGAAACGAAGTTTCGCAGCACGAAGAAGTGAGGTCATGGATGACCGATGTAACCCAGCTCCAAGGATGGATTATTCACGCTTTAGTGGTGTTTTGTGGACCCTGAAACGAGTTCAGGGAGACGACTCTTGGTTGAGTTTAACGCTTATGGAAAACTTTTATATGCGCGGCGTAAAGCCCCGCCAACAGCTAAGGTGAAACGGAATACTGGCTCAATACACTGTCTTTCTGACGAAGGTCAGAATCCAGAGTTTTAAAGTGTTGGCCTACACTGTTGAGCTTAATCTGTGCAGGTAACATTTGATGTAATCCAGCTCCAAGGATGGATTGTTCACGCAGTCGTGGCTGAACTGTGGACCCTGAAACGAGTTCAGGGAGACGAAAATAGTTAAGCAGCGACCGATTTGACCCAGCTTCAAGGATGGATTGTTCACGCAGTCGTGACTGTTTTGTGGAACCTGAATCAAGTTCAGGGAGACGAAAATAGTTAAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 465-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCK01000166.1 Pseudoalteromonas citrea strain S2233 S2233_S26_L001_R1_001__paired__contig_166, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================================================= ================== 464 28 64.3 177 ..G.....T....A...T..T..GATGT GTTTGGGTAAGTTGCAGTGAGTTAAAAGGGTAAGTACCCTTTAAAAACCTTTTATTTTTCGCTCTTTAAAAAGTAATTATAAAACAGCAAGTTACAATTGGTCGTTTTTTATATGGTTAAAATGGTATTTTAGCCGTAATGACTTGTTGTAACTTATTTTTATGATGATAGTCTATT 259 28 100.0 32 ............................ ATTAAAATTAGGTGGCATGATGGCTTGTTCAT 199 28 100.0 32 ............................ TTGCATGGTTTGTTGCAGTGGGACTACTTCGT 139 28 100.0 32 ............................ AATCCGAACTATGGTGTAAGCTTAAAACCTGA 79 28 100.0 32 ............................ ATTTTGAACGGTAAGCCCAGGCAGGATTTCAC 19 19 67.9 0 ...................--------- | ========== ====== ====== ====== ============================ ================================================================================================================================================================================= ================== 6 28 88.7 61 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGCCGCATAGGCAGCTTAGGCGATGAGTGACCGAAACGCAGTTTCGCAGCGCGAAGAGGTGAGGTCATGGATGACCGATGTAACCCAGCTCCAAGGACGGATTGTTCACGCTTAAGTGTCAATATTATGGACCCTGAAACAAGTTCAGGGAGACGAAGGAGTGGTTATGT # Right flank : A # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 334-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCK01000099.1 Pseudoalteromonas citrea strain S2233 S2233_S26_L001_R1_001__paired__contig_99, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 333 28 100.0 32 ............................ ATTTGGTCCGATAGAAAACTTTTGATTTTGTT 273 28 100.0 32 ............................ TAAATATCATATCATTTTATACATCAAAGAGA 213 28 100.0 32 ............................ ATTACTACCCCCTTTGCGCTGCGATTAAATCA 153 28 100.0 32 ............................ AGTCCAAAAAACCTATGTTGAGTCGCTTGGGC 93 28 100.0 32 ............................ AATTTGAGTGATATTGTTAAACCTGAATTCGA 33 28 89.3 0 .........A.............G.G.. | G [12] ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGCCACACAGGCAGCTTAGAAATCAGACGGTCAATCAATCTCTATAATCTTTCAGTTCACTGCCACACAGGCAGCTTAGAAAATCATTCAGACCTGTGCTCTAGTTTGTTTTTAGTTCACTGCCACACAGGCAGCTTAGGTGATGAGTGACCGAAACGAAGTTTCGCAGCGCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCAAGGACGGATTTAAAACGCTGAGGTTAGTTTTACTATTCACTGCCGCACAGGCTGTAGTGGGTGCTTTATGGACCCTGAAACAAGTTCAGGGAGACAATGAGTAGCTGCGGTTGGGTAAGTTGCAGTGAGTTAAAGGGGTAAATACCCTATAAAAACCTTTTATTTTTCGCTCTTTAAAAAGTAACTATAAAACAGTAAGTTACAATTGGTCGTTTTTTTATATGGTTAAAAGGGTATTTTAGCCGTAACGACTTGTTGTAACTTATTTTTATGATGATAGTCTATT # Right flank : AATTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1438-691 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCK01000099.1 Pseudoalteromonas citrea strain S2233 S2233_S26_L001_R1_001__paired__contig_99, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1437 28 100.0 32 ............................ ATTCGCTCTGCGTCGTACATTTGCAAACGCAC 1377 28 100.0 32 ............................ CGAATGGGATAAGACAAGCGCAGCGCAGGCTT 1317 28 100.0 32 ............................ TGATTAAAGAAATAGAACGTATGATTATGCTC 1257 28 100.0 32 ............................ TCTAGATGATGAACAAGTTAAAACTTATTCAA 1197 28 100.0 32 ............................ AGTTGTCGCGAAATATTGCAAGGGCGGGATGC 1137 28 100.0 32 ............................ TCATTCTCAAGCTGCATCGAGTTAACCCAATC 1077 28 100.0 31 ............................ ACTGCGTTTGTTGAAGCTTGGCGTTCTGGTA 1018 28 92.9 32 ..........G..C.............. ACACAATTTAGCTGGCGCGCTTGCTTGCAGAC 958 28 92.9 32 ..........G..C.............. ACGTTGTCATACACGCAAAGCATGGCGCTATA 898 28 100.0 32 ............................ CACTAGTCCAAGATAGGTCGGCTGCGCCGACG 838 28 96.4 32 .............C.............. TCAGACGGTCAATCAATCTCTATAATCTTTCA 778 28 96.4 32 .............C.............. ATCATTCAGACCTGTGCTCTAGTTTGTTTTTA 718 28 85.7 0 .............C...........GTG | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.3 32 GTTCACTGCCACATAGGCAGCTTAGAAA # Left flank : TCACTGCCGCACAGACTGTAGTGGTGCTTTATGGACCCTGAAACTAGTTCAGGGAGATGAAGGGTGGCTGCGTTTTATATATGCGCGGCATAAAGCTTTGCCAACGAGTGGGGCATATGAATTTCGTCTTTCTGACGCAGGTCAGAATCCATGGTTTTAAAGTGTTTGCCTGCACCGTTTAGTTTAATTCATACAGTGACCGATGTAACCCAGCTCCAAGGATGGATTATTTACGCTGTAGTGGATGCTTTATGGACCCTGAAACCAGTTCAGGGAGACGAAGGGTGGTTATGTTATGCACTGTCGTAAAGGTAGTTTGACGTGTTTGGGTAAGGTGCAATGAGTTAAAGGGGTAAATACCCTTTAAAAACCTTTTATTTTTCGCTATTTAAAAAGTAACTATAAAACAGTAAGTTACAATTGGTCGTTTTTTATATGGTTAAAATGGTATTTTAGCCGTAACGACTTGTTGTAACTTATTTTTATGATGATAGTCTATT # Right flank : ATGAGTGACCGAAACGAAGTTTCGCAGCGCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCAAGGACGGATTTAAAACGCTGAGGTTAGTTTTACTATTCACTGCCGCACAGGCTGTAGTGGGTGCTTTATGGACCCTGAAACAAGTTCAGGGAGACAATGAGTAGCTGCGGTTGGGTAAGTTGCAGTGAGTTAAAGGGGTAAATACCCTATAAAAACCTTTTATTTTTCGCTCTTTAAAAAGTAACTATAAAACAGTAAGTTACAATTGGTCGTTTTTTTATATGGTTAAAAGGGTATTTTAGCCGTAACGACTTGTTGTAACTTATTTTTATGATGATAGTCTATTGTTCACTGCCGCATAGGCAGCTTAGAAAATTTGGTCCGATAGAAAACTTTTGATTTTGTTGTTCACTGCCGCATAGGCAGCTTAGAAATAAATATCATATCATTTTATACATCAAAGAGAGTTCACTGCCGCATAGGCAGCTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCACATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2600-1972 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCK01000099.1 Pseudoalteromonas citrea strain S2233 S2233_S26_L001_R1_001__paired__contig_99, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2599 28 100.0 32 ............................ CCGGGTAACCAGTATCGAAGCGTTTTTAAAGT 2539 28 100.0 32 ............................ AACTCGGATAGCTTGGCAAGCCAAATAATAAT 2479 28 100.0 32 ............................ AAGCTGAGAATTTACACCCTTTATATTCGCTA 2419 28 100.0 32 ............................ ATCAAGGGACAAGTCCCTTAATAATCCCTTTT 2359 28 100.0 32 ............................ CATAGTTCGAACAATTCGACCTATCGCGTGGG 2299 28 100.0 32 ............................ ACCGCGAGGTGGCGCAGGAGGAGTAACTTTCT 2239 28 100.0 32 ............................ TAACCACTCAACAGGAGTCGAGCCTTATAAAG 2179 28 100.0 32 ............................ GAGCGAGTACGAAGGCAAGATTTTAAGAGATG 2119 28 100.0 32 ............................ TTAAATGAGGGCGAAAGTTAAGGACTAAATCA 2059 28 100.0 32 ............................ AGTTGGGGTTAAACTTAATCTGGCTGTTTAAT 1999 28 96.4 0 ............G............... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.7 32 CTTCACTGCCACACAGGCAGCTTAGAAA # Left flank : GCCAGATGAGGTCAGTTATGTGAGCTTTACGCGAAAAAATGTTAAAAGCCCTGAGCGTATTGAACGTGAAATGGCAGAAAAAGCTCGGCGGTGGTCTCAAAAAAGCGGTAAGCCATTAGAGGAATGCCTAGCTGAACTTGAGCAGACAAAACCTGAGTTAAATACCAAGCACCCCTTTATCTTTCTGCATAGCCAACAGACCAAAGCGAAAGAACCAGATAAAGACAGTAAGTACCCACTATTTTTTACTATGCAAGAACGCGAGAATGATACAAATGGCACATTTGATTGTTACGGGTTGAACGCAAAGGTAAATGATGAAAACTCGGCTGGGTGCGTGCCTCAATTCTAATAAAATAAAGGGCTTTTCCCCTTTATTTTTGTTCTTTAAAAATTATCAGTAAAAACAACAGGTTGTGACATGTTGTTTTAAACAAGGTAAAAATAGGTTTTTTACCTTAATAGTCTGTTGCAACTTATCTTTTTTCATTTATTCTATA # Right flank : GTGGGAAGGAGTGTTCAACGGTTGCATTGCTAGTTCACTGCCGCACAGACTGTAGTGGTGCTTTATGGACCCTGAAACTAGTTCAGGGAGATGAAGGGTGGCTGCGTTTTATATATGCGCGGCATAAAGCTTTGCCAACGAGTGGGGCATATGAATTTCGTCTTTCTGACGCAGGTCAGAATCCATGGTTTTAAAGTGTTTGCCTGCACCGTTTAGTTTAATTCATACAGTGACCGATGTAACCCAGCTCCAAGGATGGATTATTTACGCTGTAGTGGATGCTTTATGGACCCTGAAACCAGTTCAGGGAGACGAAGGGTGGTTATGTTATGCACTGTCGTAAAGGTAGTTTGACGTGTTTGGGTAAGGTGCAATGAGTTAAAGGGGTAAATACCCTTTAAAAACCTTTTATTTTTCGCTATTTAAAAAGTAACTATAAAACAGTAAGTTACAATTGGTCGTTTTTTATATGGTTAAAATGGTATTTTAGCCGTAACGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 14631-13643 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCK01000099.1 Pseudoalteromonas citrea strain S2233 S2233_S26_L001_R1_001__paired__contig_99, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 14630 28 100.0 32 ............................ TTTTAGGGCTTTGGGTTTGGCACTTAATACCT 14570 28 100.0 32 ............................ AAGCAGCTCCATGAACTCGGCAAACCGCGAAT 14510 28 100.0 32 ............................ ATTCTGCTACGGTAACTTTGGTTTTGATGGCA 14450 28 100.0 32 ............................ AGAGAGCGAAAACGACACACAAAATTACATTG 14390 28 100.0 32 ............................ TACAGAAGAAAATTTCGAGCGTTGGGCGGGTA 14330 28 100.0 32 ............................ CTTCTGAGACCATGCATTTCAAAGAAACAATC 14270 28 100.0 32 ............................ ACTACTAAGTACACAGCGTACGTGTCTGTGAA 14210 28 100.0 32 ............................ ATCTAGTTACCTAGTGTGCTTAGTGAGCTTAT 14150 28 100.0 32 ............................ TCACGTTACCTGAGTCACTTAAAGTTGTAGAG 14090 28 100.0 32 ............................ AACAGGGTGGATGATAGTCCTCACGTGCGTAC 14030 28 100.0 32 ............................ GTAATATTTATACCCTTTTTAAATACTAAATT 13970 28 100.0 32 ............................ AGAAGAGTACAAGGGCAAGATTTTAAGAGATG 13910 28 100.0 32 ............................ TTAATGAAGTGTTTACAGGTAGCTCAATGAAG 13850 28 100.0 32 ............................ TTTATCTGGCATTAATGATGCGTTGAACACCT 13790 28 100.0 32 ............................ AAACTGTGAAACTCCATGCACAGGTCCAAACT 13730 28 100.0 32 ............................ ATCAATACAGCTGTGTACGAGATAAAACTACT 13670 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CCGCATAGGCAGCTTAGAAAGCTGGCTCACTTGGATCGGTTCGCAAAATTG # Right flank : ATGAGTGACCGAAACGAAGTTTCGCAGCGCTAAGAAGTGAGGTCATGGATGACCGATGTAACCCAGCTCCAAGGATGGATTTAAAACGCTGAAGTTAATTTTATCTGTTCACTGCCGCACAGGCTTTGGTAGTTTTTTTATGGACCCTGAAACAAGTTCAGGGAGACGAAAGGTGGTTGCGGTTGGGTATGTGCGGCATAAAGCCCCGCCAACGAATGAGGCACCACACAATTCGTCTTTCTGACGCAGGTCAGAATCCATGGTTTTAAAGTGTTTGCCTGCACCGTTTAGCTTAATTCATATAGGCAACGACCGATGTAACCCAGCTCCAAGGACGGATTTAAAACGCTGAGGTTAGTTTTATCTATTCACTGCCGCACAGGCAGCTTAGAAATAAACAATATTTAATTACTGCTGAAAGTGGTGGTTCACTGCCGCACAGGCTTTGGTAGTTGTTTTATGGACCCTGAAACAAGTTCAGGGAGACTAAGGGTAGTTGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //