Array 1 50824-51278 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBIJ01000005.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN051010 CFSAN051010_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50824 29 100.0 32 ............................. GGCGCCATTACCGGCGAATTAGCCGCCGGGGG 50885 29 96.6 32 .G........................... CAAGTGCCACACCGGCACCGCCTTAGCGCGGA 50946 29 100.0 32 ............................. CAAAACCTGGGGGACGAGGAGCTGTCCATTTG 51007 29 100.0 32 ............................. AGGTGTCCCGGTGGATGCTGGCCCGCAGGTTC 51068 29 100.0 32 ............................. TTACGGCGATATTCAGGCGGGTAGTCCAGCAT 51129 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 51190 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 51251 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67422-69283 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBIJ01000005.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN051010 CFSAN051010_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 67422 29 100.0 32 ............................. TCCGACTCGCCAACCTGGTCTATGTGCTCTAT 67483 29 100.0 32 ............................. TCAACAACGGACTTACATAATTTTGCTTGTAT 67544 29 96.6 32 ............................T GCACCTTCCAGGATTGCAGAAATATAATTAAT 67605 29 100.0 32 ............................. CCCGTTTTGTGGCGGTGTGGCTGATCGTGTAA 67666 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 67727 29 100.0 32 ............................. GATCGCCCTCCGTTGAGCCATTATGTACAGCC 67788 29 100.0 32 ............................. GCCAGGTCCGTATGAGGACCGTATTTGAGCAG 67849 29 100.0 32 ............................. GTTCGATTCACATCAGGTCTGGGGGCTTACTA 67910 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 67971 29 100.0 32 ............................. ATGTGTGAGATACCGGCGCGGCCTGACATCAC 68032 29 100.0 32 ............................. CGGCGCCGTCCGGTAGTTCGTCGACAGAATCG 68093 29 100.0 32 ............................. TGACGTTATACATTTTCTCGCGAGCGATTTGC 68154 29 100.0 33 ............................. TTGAGCACGACGAAATTTTGGTTTGATGCAGCC 68216 29 100.0 32 ............................. GATACGGGCGCGCGGACGTTCTCCGCTGGCAG 68277 29 100.0 32 ............................. CCGCCAACTGTTTTGATAAATATCACCTGGCC 68338 29 100.0 32 ............................. CTCACGCCCATCTTTTTCCATTCATCCCACAA 68399 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 68460 29 96.6 32 ...........................T. TTGTCAGCGCTGACACTACTCGCTGCTTTCTG 68521 29 100.0 32 ............................. TCGAATCAGGTGGCGAACAGATCGAGTATCGT 68582 29 100.0 32 ............................. CCTGCTTTCTCTATCAAAGGGAAACTTCCTTT 68643 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 68704 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 68766 29 100.0 32 ............................. TGAAATCCATCCGCTACGAACCTGAAGAAAAA 68827 29 100.0 32 ............................. AGTATTGCAACTACGGCTGACGCGCTGATCGA 68888 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 68949 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 69010 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 69071 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 69132 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 69193 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 69254 29 93.1 0 A...........T................ | A [69280] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGCAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTTAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //