Array 1 13977-13745 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZU010000069.1 Weizmannia coagulans strain DS16_15 NODE_70_length_14032_cov_67.733276, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================= ================== 13976 24 87.5 28 ......G.C.T............. CACGCTGCTTCCGGGTCCAAAATGTCTT 13924 24 100.0 28 ........................ CACGTTACGTCTGGATCCGAAATGTCCC 13872 24 100.0 29 ........................ AAAGGATCGCGTTTGGGCCCAAATATCCT 13819 24 95.8 27 ..........T............. GGAGTCGCGACTGGATCAAAATGTCTT 13768 24 83.3 0 ......GT.....C.C........ | ========== ====== ====== ====== ======================== ============================= ================== 5 24 93.3 28 TTTGAACCTGCCAAAAGGACAAAA # Left flank : GCCAAGAGTTGATAAAATGACTCCTTCTTTTTACACAATTATACGGACTTAATCC # Right flank : CAAAACATTACTCCGATGAAGGACAATTTGACGGTTCACTTTTGTCTATCCTGAAAAATATGCGCCAGCTGATTTTCATTCTACTGTTGGTGCGCGTTCACTGCAGCATGGGCGTCTAATTGGATCTTCCAATTAGACAAAACACGCTCGGGTTCCGGGGCTTTTGTCCAATTAGAGGCGGCTCGGTCATCGTTCCCTATGAAGAACAGTTCGCCGATTCCCGGCCTCGCATTTTGTGCCCGTTCCCCTCGTACGAGCGTTTTTTCTCCGGCTATAAAAAAAGGCGGGGAATCCTCCCCGCAACTTGTCAGCAGAAGCTTGCACCGACAATAATTAACAGAATGAACAAAACAACGATCAATACAAATGTGCTGCCGTAGCCGTAACCACCGCCGTAACCGCCATAGCCGCAGCCGCCGCCATAACCGTATCCAAACATGTTTTTCACCTCACTTCTTGTATTACACTATACAATATGTAAGGTGCAGGCATTCGGTATA # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGAACCTGCCAAAAGGACAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 80055-79427 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZU010000006.1 Weizmannia coagulans strain DS16_15 NODE_6_length_80077_cov_81.457437, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 80054 32 100.0 36 ................................ GCCAGTACATCGGTCACGTCGGTTATGACGTCTATC 79986 32 100.0 34 ................................ AAGACGCCTACCAGTTAATTGCGGTCGATACGGA 79920 32 100.0 33 ................................ CTGTTTGAATGCACGGGACTGACTGAATACTGG 79855 32 100.0 33 ................................ CGGTGCATCCTTGAGTGCTTCAATATGGTGCAC 79790 32 100.0 34 ................................ TGCCGGAGGACCTGGATACAGCTATCCAGCATTA 79724 32 100.0 34 ................................ TGCAATGGCAGGGAGCCTTAATCTTTCCCACTTT 79658 32 100.0 34 ................................ CATTCCTCCATGCTCCACCCCGTCCACGCTTGTA 79592 32 100.0 35 ................................ CTTTAAATACGCGGAAACATCCCCATAGTTTGCAG 79525 32 100.0 35 ................................ CTCCTCCAATATGTATAGATCGTCAACCTTCACCC 79458 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 100.0 34 GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Left flank : TGCTCACTCTATAAAATCACTC # Right flank : CGTTTGCTGTATTTGCGATCCCTAGGATCATCAAGTCGCTCCCTAATGAATACTTGCTGAGCAAACCAGACAAAGCCTTGTATCTGGTTCGCTCAGCCGCAAATCTGGTTGATGCCGCCTTCTTTGTTCCTTCCATCAACCTTAGACCCGAAAAGTGGCGCTGAACGCGCAGATACCAGTGACAAACCCTTTTTGTAAAGTAACTCTTGTTTTTATAGTTCCTGGAACCGGGACCAGGGCTTTCCTTATTCAGCAGCCCCCGATTATGTATTTCTGTCATCCTCGTCGTCCAGTTCCCTGATCAAATTCCAAGTCTGATAAATCCGGTTTGCCATTTTCTCAGGATCTTTCAGCATCATTTGGTATAAATCCGGCTCATGGCTCAACGTTTCAAGCAGTTTCTTTTCCGGATTACTGACCGCTTCATTTGTCTTCAGGCCGGCATGGTTGGTAAGGCCCAAAAGATAATCAATTGAAACTTTCAACACTTGCGAAATTCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.90,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1444-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZU010000084.1 Weizmannia coagulans strain DS16_15 NODE_85_length_9759_cov_97.609027, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1443 32 100.0 34 ................................ CGCCGACAAATACAAATGAATTTCACTCGTCAAC 1377 32 100.0 33 ................................ ATCAAGCGGAAAGCACGTTGGCAAATGGGCGGT 1312 32 100.0 33 ................................ TGGAACAGTTAACGTCAGACAATTTACAGGGCT 1247 32 100.0 34 ................................ CCAAACGATCAGGGATAAAGTATGGGATGAGTGG 1181 32 100.0 36 ................................ ATCTAATTCAACTAATGAACCGTCATCGTATCTGCT 1113 32 100.0 34 ................................ TTCCCGCTGCTGGTTGATCAGCTTTTTCTGTTCT 1047 32 100.0 35 ................................ AGACGACAAATACGACTTACTTTGGTACAAGTTAT 980 32 100.0 35 ................................ TACATCTGGCACATACACGTTAAAGCTGGACGAGC 913 32 100.0 34 ................................ CGGGTCAAAATCCAAAAGGTTTAAAGCATCGCTA 847 32 100.0 36 ................................ TTCTAGCGTTATAACCGGGCGGTCTGGCATTTTGCC 779 32 100.0 33 ................................ CGCGCTATGCTACTGGAATAGGGACATTGCCAC 714 32 100.0 35 ................................ CTAAACCGTGACAAGCAAAATCCGAAACACGACAA 647 32 100.0 34 ................................ CCAAGCTCGATATAATAATCAGCAAAAGCCTGCT 581 32 100.0 34 ................................ GTAGACAATGCGTTGTAATTCCGAGTCAAAAAGT 515 32 100.0 34 ................................ GAACTTAACGACGGAATCGAACTCGACAGCGACG 449 32 100.0 33 ................................ GCACCATGCTCATCGGGCAAAGGAAAACATCCT 384 32 100.0 34 ................................ GTTGCAGAACAAGGCTTTGATGGCATCGATTATA 318 32 100.0 34 ................................ CCGTCATCAATTTTGCACCGGATTGTGCATCCTG 252 32 100.0 34 ................................ AGGCAGATCACCCGGATCTTTTGGACCGGGAAAT 186 32 100.0 33 ................................ AGTTAAAAATTGTCGGTTTTTGCCGTCCGTATC 121 32 100.0 34 ................................ TATGCGCAGCTGGCCTGTCTCTACCGCCTGCATT 55 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 22 32 100.0 34 GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Left flank : AGATGAGTATCCTCCTTTTCTGTGGAAGTAGGTGGAAAATTTTGCTTGTTGTCATTACTTATGATGTGAGTACTTTGACCGGAGCAGGGCAGAAGAGGTTAAGAAAAGTAGCGAAAGTTTGTCAAAACTATGGCCAGCGTGTCCAGAATTCCGTTTTTGAGTGTTTCGTTGATGCAACACAATTTGCCTCTTTGAAGATTGAACTGTCTAATATTATTGACCCAGATGAAGATAGCCTGAGATTTTATCAGTTGGGAAACAACTATAAAAATAAAGTAATGCATATCGGGGCAAAACCATCTTTGGATTTAGAAGACCCCTTGATCTTTTAGTGCGAAGGTGTAGTGCACACGATTTTCCCGTGTGTTCGCACCAATATGCTAACCAATATTTTACATATATTGGTTAAATGTGGAAAAATAGTCCTTTGTTTATCAGAGGAAATGGCGAAATTTGGTTGTTTTAAAAACGTACATTCGCCTTTTTGACCAAATTCCGCT # Right flank : TATCAAGCCACTCAGGCGGGTTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.90,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //