Array 1 548223-553614 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076374.1 Shewanella algae strain Colony281 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 548223 28 100.0 32 ............................ AGCCANNNNNNNNNNNNNNNNNNNNNNNATAG 548283 28 100.0 32 ............................ GCNNNNNNNNNNNNNNNNNNNNNNNNNNNCAA 548343 28 100.0 32 ............................ ACATNNNNNNNNNNNNNNNNNNNNNNTTGGCT 548403 28 100.0 32 ............................ TGCANNNNNNNNNNNNNNNNNNNNNNATTTAC 548463 28 100.0 32 ............................ TCANNNNNNNNNNNNNNNNNNNNNNNNNNNAC 548523 28 100.0 32 ............................ TGGCGNNNNNNNNNNNNNNNNNNNNNNNNTGA 548583 28 100.0 32 ............................ TGTGNNNNNNNNNNNNNNNNNNNNNNNAACGA 548643 28 100.0 32 ............................ GTAATCNNNNNNNNNNNNNNNNNNNCAAGACC 548703 28 100.0 32 ............................ TACAAGNNNNNNNNNNNNNNNNNNNNNGGTGA 548763 28 100.0 32 ............................ TTTCNNNNNNNNNNNNNNNNNNNNNNNNTTTC 548823 28 100.0 32 ............................ TCCCTNNNNNNNNNNNNNNNNNTGTTTGGTTG 548883 28 100.0 32 ............................ AAACAGCNNNNNNNNNNNNNNNNNNNNNACCC 548943 28 100.0 32 ............................ GAGTNNNNNNNNNNNNNNNNNNNNNNNNTGGA 549003 28 100.0 32 ............................ TGAANNNNNNNNNNNNNNNNNNNNNNACAAGA 549063 28 100.0 32 ............................ TCGACNNNNNNNNNNNNNNNNNNNNNNNNTAG 549123 28 100.0 32 ............................ ATCTTTNNNNNNNNNNNNNNNNTAGTATGTTT 549183 28 100.0 32 ............................ AATATNNNNNNNNNNNNNNNNNNNNNNNTTGT 549243 28 100.0 32 ............................ GCCANNNNNNNNNNNNNNNNNNNNNNNNTACA 549303 28 100.0 32 ............................ ACAGNNNNNNNNNNNNNNNNNNNNNNNNNATT 549363 28 100.0 32 ............................ ATAAGANNNNNNNNNNNNNNNNNNNNNNNNNC 549423 28 96.4 32 ......................A..... TNNNNNNNNNNNNNNNNNNNNNNNNTGGCAAA 549483 28 100.0 32 ............................ TAACTNNNNNNNNNNNNNNNNNNNNNNACACA 549543 28 100.0 32 ............................ TCTNNNNNNNNNNNNNNNNNNNNNNNNNCGCT 549603 28 100.0 32 ............................ AGCAANNNNNNNNNNNNNNNNNNNNNNCTGAG 549663 28 100.0 32 ............................ ATAGTAGNNNNNNNNNNNNNNNNNNNTCACAG 549723 28 100.0 32 ............................ TTCTNNNNNNNNNNNNNNNNNNNNNNNNTTAC 549783 28 100.0 32 ............................ TGCCAGANNNNNNNNNNNNNNNNNNNNNCTTT 549843 28 100.0 32 ............................ AAAACAANNNNNNNNNNNNNNNNNCCAAATGC 549903 28 100.0 32 ............................ TCTNNNNNNNNNNNNNNNNNNNNNNNNCTCAT 549963 28 100.0 32 ............................ ACTCATNNNNNNNNNNNNNNNNNNTTACCCAC 550023 28 100.0 32 ............................ TACTCAAANNNNNNNNNNNNNNNNNNNNTAGA 550083 28 100.0 32 ............................ GCAACATGANNNNNNNNNNNNNNNNNNNAGAT 550143 28 100.0 32 ............................ ATTAGTNNNNNNNNNNNNNNNNNNNNNNNGTT 550203 28 100.0 32 ............................ TCATTGNNNNNNNNNNNNNNNNNNNNNCTATT 550263 28 100.0 32 ............................ GAATNNNNNNNNNNNNNNNNNNNNNNNNCAGA 550323 28 100.0 32 ............................ TTATATNNNNNNNNNNNNNNNNNNAAATATTC 550383 28 100.0 32 ............................ AATCTGNNNNNNNNNNNNNNNNNNNNNGTTTA 550443 28 100.0 32 ............................ ATGCTNNNNNNNNNNNNNNNNNNNNNNAGTAT 550503 28 100.0 32 ............................ CTTNNNNNNNNNNNNNNNNNNNNNNNNNNNTA 550563 28 100.0 32 ............................ CTTCNNNNNNNNNNNNNNNNNNNNNCGCGCTA 550623 28 100.0 32 ............................ ATAAGGNNNNNNNNNNNNNNNNNNNNNGTTAT 550683 28 100.0 32 ............................ TGCCNNNNNNNNNNNNNNNNNNNNNNNATCAC 550743 28 100.0 32 ............................ GTAAANNNNNNNNNNNNNNNNNNNNNNNNCAC 550803 28 100.0 32 ............................ TTTTGNNNNNNNNNNNNNNNNNNNNNNNTAGC 550863 28 100.0 32 ............................ GACANNNNNNNNNNNNNNNNNNNNNNNNACAT 550923 28 100.0 32 ............................ AACACTNNNNNNNNNNNNNNNNNNNNNNNCTA 550983 28 100.0 32 ............................ ACCTTGTCNNNNNNNNNNNNNNNNNNNACAGC 551043 28 100.0 32 ............................ TTGGTNNNNNNNNNNNNNNNNNNNNNNNNGAG 551103 28 100.0 32 ............................ ATCTNNNNNNNNNNNNNNNNNNNNNNNNNAAC 551163 28 100.0 32 ............................ TGTCNNNNNNNNNNNNNNNNNNNNNNNNNTGG 551223 28 100.0 32 ............................ GTAAANNNNNNNNNNNNNNNNNNNAAATTCAC 551283 28 100.0 32 ............................ TTTTGNNNNNNNNNNNNNNNNNNNNNNNNAGC 551343 28 100.0 32 ............................ GACANNNNNNNNNNNNNNNNNNNNNNNAACAT 551403 28 100.0 32 ............................ AACACNNNNNNNNNNNNNNNNNNNNNNCGCTA 551463 28 100.0 56 ............................ TGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTAT 551547 28 100.0 32 ............................ TGNNNNNNNNNNNNNNNNNNNNNNNNNNTCAC 551607 28 100.0 32 ............................ GTNNNNNNNNNNNNNNNNNNNNNNNNNNNCAC 551667 28 100.0 32 ............................ TTTTGNNNNNNNNNNNNNNNNNNNNNNNNAGC 551727 28 100.0 32 ............................ GACANNNNNNNNNNNNNNNNNNNNNNNNACAT 551787 28 100.0 32 ............................ AACACNNNNNNNNNNNNNNNNNNNNNNNNCTA 551847 28 100.0 32 ............................ ACCNNNNNNNNNNNNNNNNNNNNNNNNACAGC 551907 28 100.0 32 ............................ TTGGTNNNNNNNNNNNNNNNNNNNNNNNNGAG 551967 28 100.0 32 ............................ ATCTANNNNNNNNNNNNNNNNNNNNNNNNNAC 552027 28 100.0 32 ............................ TTTTNNNNNNNNNNNNNNNNNNNNNNNNNAGC 552087 28 100.0 32 ............................ GACANNNNNNNNNNNNNNNNNNNNNNNNACAT 552147 28 100.0 32 ............................ AACACNNNNNNNNNNNNNNNNNNNNNNNNCTA 552207 28 100.0 32 ............................ TGCTNNNNNNNNNNNNNNNNNNNNNNNAAGCA 552267 28 100.0 32 ............................ AAGACCNNNNNNNNNNNNNNNNNNAACATAAA 552327 28 100.0 32 ............................ TGCTTAGTGAGTTTTGCAAGCATCGAATGGTT 552387 28 100.0 32 ............................ AACGTNNNNNNNNNNNNNNNNNNNNNNCGGAT 552447 28 100.0 32 ............................ TGGATACTNNNNNNNNNNNNNNNNNNCCAACG 552507 28 100.0 32 ............................ GGATGNNNNNNNNNNNNNNNNNNNNNNNNNGG 552567 28 100.0 32 ............................ ACTANNNNNNNNNNNNNNNNNNNNNNCAAGTT 552627 28 100.0 32 ............................ GCGNNNNNNNNNNNNNNNNNNNNNNNNNGCAA 552687 28 100.0 32 ............................ ACTNNNNNNNNNNNNNNNNNNNNNACCAAGTT 552747 28 100.0 32 ............................ GCGNNNNNNNNNNNNNNNNNNNNNNNNTGCAA 552807 28 100.0 32 ............................ ATAACGNNNNNNNNNNNNNNNNNNNNNNNATT 552867 28 100.0 32 ............................ ATTATNNNNNNNNNNNNNNNNNNNNNNNACGG 552927 28 100.0 32 ............................ TGATANNNNNNNNNNNNNNNNNNNNNNGTCAT 552987 28 100.0 32 ............................ ACCACGNNNNNNNNNNNNNNNNNNNNNTGTAT 553047 28 100.0 32 ............................ ATATNNNNNNNNNNNNNNNNNNNNNCGACTTT 553107 28 100.0 32 ............................ ATCCANNNNNNNNNNNNNNNNNNNNNNNNCGG 553167 28 100.0 32 ............................ TTCATNNNNNNNNNNNNNNNNNNNNNNATACC 553227 28 100.0 32 ............................ TTACGCANNNNNNNNNNNNNNNNNNNAACAAC 553287 28 100.0 32 ............................ AAATGTGNNNNNNNNNNNNNNNNNAAGGCCGA 553347 28 100.0 32 ............................ GGNNNNNNNNNNNNNNNNNNNNNNNNNNTTGA 553407 28 100.0 32 ............................ TTTCTCAGGNNNNNNNNNNNNNNNNNNNTGGC 553467 28 100.0 92 ............................ CTACTTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTA 553587 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================ ================== 89 28 100.0 33 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGCAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCCGTTCGATTGCTACGGGTTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTGTTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACTTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : AGTTCTTCTGGTGATGACCTTTCCCCCGAATTTATCACTCGGCCCCAGCAGTATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGACAGTTGGAAGCGTCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGGCCCGGTAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTATCGGAGGCGGCATCGGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCCTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAACTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCATCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //