Array 1 20362-20596 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZR01000022.1 Streptococcus halichoeri strain S212 NODE_22_length_20769_cov_82.654103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 20362 36 97.2 30 ............................T....... GACAGTAGAGGCAATCATACTCAAAACGGC 20428 36 100.0 30 .................................... AATTGCTTGACGAAGAAATGCCATTCTTCA 20494 36 100.0 31 .................................... CACAGTAGAGCGGAATTTGAGCTTGCGAAGG 20561 36 86.1 0 .............................TTG..CG | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 95.8 31 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : CTATCGTTCGCGGGGAAGGGCTCACGCAGATGAAAGGATGTAAATGTTCCTTTAAAAGTTATGCCGTGCTTAAAACCAGTCAGATAGTTCAAGTTAGCCAAATTTAAAGAATAGTGATGTGATAGGTAAAGGGAAAATGAGTGAGGCGGACCGTAAATTAGGCGATTTTTACTGTGCTTATCAAGGTAAAAATCGCTCATGCTCCGCCAATTAACCGTAGAGCTGCCGCAGAGAGAATAAAACAAAGGTGGATTCTCAAAATCAGTCCGCCTAGAAATTAATCTGAGAAAGCTGAAAAAGCAGCACAGAATTTTTGCTTACTACAGCAACTAACCCCAATATTGTTTGAGACTTAATCGGCCGCCAAAAACTTCTTAAGCCAATTGATTTCATAAGGTTTTTGCCGTATAATAGTGCTATGAAAGGACGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAAATGTGGACAAACCCTGTCTACGAG # Right flank : AAGTGTTAGCTCCGCCTTTCCCCTTTTGATTGCTAAAACTAAAAATAAGGTAAATTCCCAAAGTAAGTTCCAGTCTCATCAAACTGGCACTTAGTTTGGGAAAAACGCTTAAAATCAACAGAATTTAGTCCCGGACCAAGTTCTGTTTTTTTGTCAATATCGCTAACCAAAGG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 1 815-316 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZR01000030.1 Streptococcus halichoeri strain S212 NODE_30_length_1993_cov_88.192926, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 814 36 100.0 30 .................................... AGGCGAAATGCCGCACATTGTCTTTATTAA 748 36 100.0 30 .................................... ATTAGCCGGTATTGTTGCTGCATTTTCAAT 682 36 100.0 30 .................................... CAAACACCATAGCGTTTGCGCGATTTTTCC 616 36 100.0 30 .................................... TTCGTCTTGGATTTTTTCGAGCTCTTTATC 550 36 100.0 31 .................................... CCTCGTTTAGTGTGTACTCGCCATTTGAATC 483 36 100.0 30 .................................... TGATTTAAATTCTTACGGCGCTAGAATCAT 417 36 97.2 30 .C.................................. TCACCAAGTTACGGCAACAAAACTTGTTGG 351 36 83.3 0 .C...........................TTG..CG | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 97.6 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AAACTAGCAACAGACCAAACGTTAATCTCTCGAAAAGTCCGTTGAAGCATCCCAGTAAGCAGTAAAAACTGAGAATATAAGAGCATATAAATTGCTTTGGGGATCGATACAGTGTCTTAGACCATAGTCCAAAGCAAGTATTTGTCATCCCCCGAATAGACAGAAAAAAAAGAGTCATGTATCCAATCGTTCATATTTCTCCTGATAAATCGATTGCTGCCATCAATCAAGCCAAGCATTTGGAATACAAAACACCAGCCAAATGCTAGCATAGCAGCTGAGGAACCAGAGATTAGGGGTTTAATAAAAATTTTTGAACCTAAACTGAAAAGGTGCTGACGATTAATCAGCCGACAACCATGATAGTTAGCCTTCTTAACGCATTGATTTCGCAAGAATTTTGCCGTATAATAGTGCTATGAAAGGACAATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : GAAGTGTTAGCTCCGCCTTTCCCCTTTTGATTGCTAAAACTAAAAATAAATTTGAAAACCTCTTGACAAAGCGCCAGAAAGTGAGTATACTAAGAAAGTTGTCAGCTGATTAGCGCAAGTGTCAATAAAAAGTAAAAAAAGTTATTGACAAAGCCTTAAGAAGCTGATAGAATAAAGAAGTTGCCTCGTAAGAGGGGAAAGACCTTTGAGAACTGAATAAGACGAACCAAAAAGTGAAGAGGGGTTTATAAGCAGTATAGACTCCGTCAAAGCAAAAATAAATCTGTCAGCGGACAGAAAGGAACGAGTAAGTTCA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 1 458-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZR01000003.1 Streptococcus halichoeri strain S212 NODE_3_length_132639_cov_77.984032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 457 36 100.0 30 .................................... TTTTTGAATCGGCCAATCGTACCACGTTTT 391 36 100.0 30 .................................... TAGCAGGTTGTTGCAAGTTTTGCGAAGAGT 325 36 100.0 30 .................................... AATATAATCATAAAGAAAAACAACAAACAG 259 36 100.0 30 .................................... ACTTGTTGTGTCCATCAGCGCTTTAAGTGA 193 36 100.0 30 .................................... AGGCGAAATGCCGCACATTGTCTTTATTAA 127 36 100.0 30 .................................... TGATTTAAATTCTTACGGCGCTAGAATCAT 61 36 97.2 0 .C.................................. | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 99.6 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : ACTAGCAGCAACTATAACAGAATTAATCGCCTTTGAATGTCTAGAGAACGAATTGGACTTGGAATATGATGAAATTACTATCTTGGAACTTATAAAGGCTTTAGGGGTTAAGGTGGAAACACAGAGTGATACTATTTTTGACAAGTGTTTGGAGATTTTACAAGTTTTCAATACCTGTCTAAAAAGAAACTCTTAATTTTTGTGAATTGCGGCTCCTATCTTACCAAAGAAGAACTCTTGAAGCTGAGAGAATATATTGAATTATCTCAGCAAACGGTCCTCTTATTAGAGCCAAGAAGTTTGTACGATATTCCGCAATATGTTCTAGATGAAGACTATTTTTTGATAGCAGAAAACATGCCATAGTCTAGCTTCTAAAAACCTTGATTTCATAAGGTTTTTGCCGTATAATAATGCTATGAAAGGGCGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : CTCACCAAGTTACGGCAACAAAACTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], //