Array 1 316789-318342 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHTA010000003.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain BCMOA-B-TMB-02 NODE_3_length_442353_cov_20.774507, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 316789 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 316850 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 316911 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 316972 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 317033 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 317094 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 317155 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 317216 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 317277 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 317338 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 317399 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 317460 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 317521 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 317582 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 317643 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 317704 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 317765 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 317827 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 317888 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 317949 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 318010 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 318071 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 318132 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 318193 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 318254 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 318315 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 334476-335952 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHTA010000003.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain BCMOA-B-TMB-02 NODE_3_length_442353_cov_20.774507, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 334476 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 334537 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 334599 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 334660 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 334721 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 334782 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 334843 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 334904 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 334965 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 335026 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 335087 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 335148 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 335209 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 335271 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 335332 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [335374] 335374 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 335435 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 335496 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 335557 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 335618 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 335679 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 335740 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 335801 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 335862 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 335923 29 96.6 0 A............................ | A [335949] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //