Array 1 4513-4772 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUYZ01000238.1 Micromonospora sp. MH33 B0E53_238, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4513 37 100.0 39 ..................................... GGCCAGGGTGCGCGGGTCGACCCGGCGGACGTGCTCGAC 4589 37 97.3 35 ....................T................ TACCGGGCCGGTGACAAGCCGTCCGGGGTGACGTG 4661 37 100.0 38 ..................................... ATGGTGCAGCAGCGCCTCGATGGGCAGCTGCTCGTCGG 4736 37 97.3 0 ........A............................ | ========== ====== ====== ====== ===================================== ======================================= ================== 4 37 98.7 38 GCTGCGCCCGGCCGTCGTGCCGGGCGAGGATCGCAAC # Left flank : CCGGTTTTGGGCCGCCCTTGAGCGCCCGGACGTGGGAGCCGTCGATCACCGCCCGGGACATGTCCAGCTGGTCCGCGGCCCGCAGTTTGCCGAGCAGGACTTCGTACAGTCGCTACCACACGCCGGCGTCGTTCCAGCCCCGCAACCGGCGCCAACAGGTCATCCCCGACCCGAAGCCGAGCTCCTGAGGCAGGTACTCCCACGGAATCCCGGTGTAGAGCACGAACAAGATCCCCCACAACACCTTGCGGTCATCGAGGGGCTTACGGCCCGGGAACCGGTGCCTGCGCGGTGCACGGGGCGGCAACAGCGACTCGATCTCCGCCCACAACTCGTCCGAGACGACCCACGGCGGCTGCTCACCCCTCCTCACGGCCGAACACTCTAGTCAACCATCCATCAAGGACAAAACCCCTAGATCATTCTGTTAGGAGTTCTAAGTAGGCCAGAGAAAGGGTCGCAACAACGGCGACGTGGCCGGCGGCGGAGACGCCCCGAAC # Right flank : CTGGATCAGAACGCGGCTGTAGCCATTCGATGCCAGCCACGCCCGCTTTGCGGTCGGCGGGGTCTGCTGCACCGGCAGGTGACAGGTGTAGTCACGCGGCCTGACTGGCCGGTGGGTGCATGATGGTTTCGAATTCAACGGGGGTCAACCGGGACAGCGACCGCTGGTGTCGGCGGCGGTGGTAGGTCCGTTCGATCCAGGTCACGATCGCGATCCGTAGTTGCTCGCGGGTGGTCCACGATCGCCGGTTCAGGACGTTGTTCTGCAGGAGTCCGAAGAAGGATTCCATGGCGGCGTTGTCTCCGGCAGCGCCGACACGGCCCATCGATCCGGCCATGTGGTGGCGGTTGAGGGCTCGGACGAACTTCCTGGACCGGAATTGGGATCCGCGGTCGGTGTGCAGAATGCAGCCCGCCAGGTCACCGCGTCTGGCGGCGGCGTTGCCCAGTGCGGCGACGGCCAGGCGGGACTTCATCCGCGAGTCGATGGAGTAGCCGACG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCGTCGTGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-15.90,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 91-666 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUYZ01000278.1 Micromonospora sp. MH33 B0E53_278, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 91 27 92.9 33 .................-.........G CGCCTACCTCGAAGGCGTCCGCTGTCCGGTTTA 151 28 92.9 33 .........A.......A.......... TCGCAAGCGCTTATTCCACTTGGTGGCGGTGTC 212 28 100.0 33 ............................ GCAGATCGCCACCGACGACTGGAACGGCGTTAC 273 28 96.4 33 ..............T............. GTCGAGGACCCGCCCCGTCTCGCCGTCGACCAC 334 28 100.0 33 ............................ GGTGTGGGGGCCGAAGAAGCGGTTCTTCTTCGT G [356] 396 28 96.4 33 .....................A...... GGCTGCCGGGGAGCTGTACTCGAAGAACTACGG 457 28 100.0 34 ............................ CGTCAAGGACGATGCCAACTGTCGAGCCGATGAC 519 28 96.4 32 ...................A........ CGCGAAGCGACCCCGCTCTCCCCGCTCGGGAG 580 28 100.0 31 ............................ TCGCTTGTCGAATGCTTGCTCGCTGCACGTC 639 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 10 28 97.5 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TCCACGCGATGACCCAGCCGGTCACCGCACCCCTGAAAACCAGCTAACCAACTCTCCATCAAACCCGGGGCTTGACAGCCTGCCCGAGAGC # Right flank : CGGCCAACGCCGAGTTGCGCGTTCAGGTCGTGGCGCCGCCACACCGCGACCGTCGACCAGTCCCCCGCCACGTCGACGTGGCCGGTCTCGATGGCGTGGTCGACGTCGACGGCGAGGAGCCGGTGCAGGACGTCCGGTCGGTGGTCGGCGTCCGGCACCAGCCACTCGGCGACTGGGTCCCGGGATAGCGCGTCGACGAGCAGGGCGGTGACGGCGGGAACGTCGGCGGGGCCCGCCCGGCGTACGGAGGTGGTCATGGCGGCGTTCACTGTGGCCGCCGGTAGTACGGGTTGGGTGGCGGGAAGGATGAGCGGACGCCGCCGTTGAGCTGGCCGCGCCACATCGGCCAGAAGGGTGGCCCGGCCGATGTGGGCTGCATCGGCGGTCCGGCTTCGTAGCCGTGGCGGGTGTACAGGTCGCGGTTGCGGGGGTTGCTGGCCTCCAAGTACGCCGGCAGGTTCTCGGCGTCCAGCGCCTCGTGGGCGTGGGCGAGCAGTGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 19966-19388 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUYZ01000101.1 Micromonospora sp. MH33 B0E53_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 19965 28 100.0 33 ............................ GGTGATTGGGTTGTTCGCGGCGTCGACGAGGTC 19904 28 100.0 33 ............................ CGGGGCCTTCACCCGGGTCGCGATCGACACGCT 19843 28 100.0 33 ............................ GATGAAGGCGAGCAGGCTGGCGATCGTCTTCCC 19782 28 100.0 33 ............................ CCGGGTCATCGGGGCGATCAACTCGGGTATCGG 19721 28 100.0 33 ............................ CCCGTTCCGGCCCCGCTCGTACGAGGACCCGAC 19660 28 100.0 34 ............................ CTGTTGGACTACGTGCAGGCCGATGGTCTGCTTG 19598 28 100.0 33 ............................ GGTGAAGCGCGTCCAGCTCGGCCTTGGTCGCCT 19537 28 100.0 33 ............................ CGACTCCCGCTCCCGGGCGGTGACCTCGGTGGC 19476 28 100.0 33 ............................ CAGGGTCCCGGACGGGTTGACCGTCGCCGAGTA 19415 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 10 28 100.0 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : CGTTGTACTTCTTCGGTGCGGGCATCGCTGGTGTTCCTCCCAGGTTTCGATGTCTCCATCAAACCCGGTGCGGAACATGGCACGACACCCGGA # Right flank : GAACGCCGGGTTGATGGTCGCCGCCGACGCGGGCTGCAATGTCGGCGTCGGCGGTGACCGGGCTGCTGCGCATCGCCTGGCGCAGCGTGGTCGGCATCGTCAACCGCGTGGTCGACGCGGCCGAAGCCGGCCTCGACCGGCTGGCCGGGGCTGCGCCGCATCGGCATCGACGAGGTCGCCTACCGCAAGGGCCAGCGCTACCTCACCCTGGTCGTCGACCACGACACCGGCCGCCTCGTGTGGGCACGCGATGGCCGGGACAAGGCCACCATCGCCGCGTTCTTCGACGAGCTCGGCCCCGAGCGGTCGGCCGCGCTGACGCACGTGTCGGCCGACGCCGCGGGCTGGATCGGAGACGTCGTGGCCGAACGAGGGCCGCGGGCGGTGCGCTGCCTGGACCCGTACCACCCTGGTCGCCTGGGTCACCGACGCCCTTGACAAGGTACGCCGGGCCGTGTGGAACAGCGCCCGAGGAGGCAAAGGCGGGCGCACGCCGGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 3349-3805 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUYZ01000438.1 Micromonospora sp. MH33 B0E53_438, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3349 28 100.0 33 ............................ CGGGACCTGCAGCAGGCCGTTGGGCTTGCCGTC 3410 28 100.0 33 ............................ GCAGAAGACCGAGGACATGGAGTCGGTCCTCGC 3471 28 100.0 33 ............................ GTCACTGCACCTCACTGAGAACGGTCAGGGTCG 3532 28 100.0 33 ............................ CGGTGTCAACGCGCAGGTCAGAGCGGTGTCTGA 3593 28 100.0 33 ............................ GTGGTTCTGCCAGCCCCACGGCGAGGAGGTCGC 3654 28 100.0 33 ............................ TGGGCCGCGGTCGGGCTGGTGCTCGGCGTGATC 3715 28 100.0 33 ............................ CTGGGTGCAGACCTACGACACGTGGCGGTCGTC 3776 28 96.4 0 ........................T... | GT [3797] ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.5 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TCTGGGACGAAGGCGGTTTCGAGTTGAGCGGCGGCCGGAACTATGGCGGGGACGTAGACTTCTGATGACCGTCATCATCCTCACCGCCTGCCCCGAAGGACTCCGAGGGCACCTGACGCAGTGGCTGCTGGAGATCTCCGCCGGGGTGTACGTAGGACACGTGAACAGTCGGATACGGCACCGACTCTGGGCGAAGGTCGTCGAGATGGCCGGACCGGGCCGGGCACTGCTCGTTTATCAGCAGCCCGGCGAGCAGCGGCTCTCCTTCAAGGTGCACGACCACCACTGGGAACCGGTGGACTATGACGGAATCACGTTGATGCGCCGGCCGACGGATCGGAAGTCGTACAACCCCGCAGTGCCCTCCGGATGGAGCAAGGCATCCAAACGCCGCAGGTTTGGCCGACGGGTCCCAGAAGCCCGCGACGGAGCATCGACGGGCCCCAAGCAAAGTGAAGGAAAAAGCGGTAGCTGATCTCTGAAGCCCCAGCTCAAGAAGC # Right flank : GCACCGGGTTTGATGGAGACATCGAAACCTGGGAGGAACACCAGCGATGCCCGCACCGAAGAAGTACAACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 110403-98948 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUYZ01000001.1 Micromonospora sp. MH33 B0E53_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================================== ================== 110402 37 100.0 38 ..................................... AGGAGGTAACCCAGGAGGGGCACGACCAGGAGCGGGAC 110327 37 100.0 38 ..................................... GAGGACCACCCGGCGGTGGTCGACGCCCGGGCCCGGCT 110252 37 100.0 39 ..................................... ACTACGGCCTGGTAGGCGTACCGGTATTCGCTGATGCGG 110176 37 100.0 38 ..................................... ATCGACTACGTGGTCGATAACGGCCCGATGCTGATGGG 110101 37 100.0 36 ..................................... TACTGGACCGTCTCGGGCATGGTCTCGGACGTGGAA 110028 37 100.0 38 ..................................... CGCGACGGCGTTCGGCATAGCGAGCAGGAGGTCATCCT 109953 37 100.0 38 ..................................... ATCCAGTCCGCCGCCGGTCGCGCGGCGACCTTCATGGA 109878 37 100.0 38 ..................................... CGGGTGCGGCCAGGCTCGCTGAACGCGGCGACCGATGA 109803 37 100.0 40 ..................................... CCATCGGCCGGTGTCGGGCCGGGTGTATCCGACCGTCCAC 109726 37 100.0 37 ..................................... CGCGGACGGCTTCCCCCACCACGCGCGCGCGAGCATC 109652 37 100.0 38 ..................................... CTCCGGCGCCTGCGACACGGCCTGGTCGAGCTTCGCCA 109577 37 100.0 38 ..................................... GGCGTTGCACACCTTCGGGCATGCCCGGGTGGCGTCGG 109502 37 100.0 39 ..................................... AACTCCTCGTTCATCAGGGACGGTGGATGAACGGAGGCG 109426 37 100.0 36 ..................................... CCCCCCGCCGGAGGACTGGGCCGGCTACCTGCGACG 109353 37 100.0 37 ..................................... GACAGCCGCACCGTCACCTGCAGCCCTTCCGGGTGCG 109279 37 100.0 38 ..................................... GCAGACGCGACACCTCCGCCGCCACATGCCTGCCCGCG 109204 37 100.0 40 ..................................... ATCTCCGCTGAGATCACCAACGACACGGGCGGGGCCAGGT 109127 37 100.0 39 ..................................... ACCACCTGGCTGACCGACATCGCCCCGTACGGTGCCAAG 109051 37 100.0 37 ..................................... ACCGTCTCCCACGTCGCGTACCGGCCCACCCCCGCTG 108977 37 100.0 36 ..................................... GCCGGCGCCGTCGGCGACACCATCACCATCCGCAAG 108904 37 100.0 36 ..................................... ATCGCCTGGACCCGCCAGCCGTGACCCGCCCTGCAT 108831 37 100.0 36 ..................................... TCCACCTGCACGCGGATCGTGTGCTCCACGTCCGAA 108758 37 100.0 28 ..................................... GACCCGGGTCGGCGTACCCGACGACCGT Deletion [108694] 108693 37 100.0 38 ..................................... ACCGCATTTCACGGGCGGCGCATGCGCGCGACGCGGGT 108618 37 100.0 39 ..................................... GCGCACAAGGCGTACCAACGGGAGGTCCAGCGCGCCGAC 108542 37 100.0 38 ..................................... GGGTTAGACGACGCCGAGTGGTACCGGTGGGCAGACGT 108467 37 100.0 37 ..................................... CTCGAACTCGGCAACCAGGTCGCCCCGCAGGCAGATG 108393 37 100.0 40 ..................................... CCCGGCGCCGGCCAGTCCCTCGCCAGCCACTGGCACACCC 108316 37 100.0 38 ..................................... CCGAGGCAGCTGGTGCCGAACTCGCCGGGGATCTGGAC 108241 37 100.0 38 ..................................... GCCAGCCTCGTCACCGACCTCGTCCGGGCGCTCGGCGA 108166 37 100.0 38 ..................................... CGAGGTCAGGGCGGCCGGTCGGTGACCGGCCCGCACGG 108091 37 100.0 36 ..................................... AGGTGCTCGGCGATTCGACGGGCAACGACGGCGACG 108018 37 100.0 37 ..................................... ATGCCCCCGGAGAACTACGTCACGACCAGCGTCACCT 107944 37 100.0 38 ..................................... CCGATCAGCGTCTCGGAGGTGGCGATGGTCTCCAGCGC 107869 37 100.0 37 ..................................... ACCGCCGAGCGCGCCGATCAGGTCCCGCCGTGCGATC 107795 37 100.0 39 ..................................... CACCTGGAGGTCCAGGGCGGAGGCGAACCGGCGCACCGC 107719 37 100.0 38 ..................................... CTGCGCCTGTCCCGGAACGGCCGGACGCTCGCGGCGAA 107644 37 100.0 38 ..................................... GGCGCGATCGTCAGCACGACGCCGACGACCACGCACGC 107569 37 100.0 39 ..................................... TTCGACCCCTGCGGGCCGGGCCGCCCGTAGACGCGCAGC 107493 37 97.3 38 ...C................................. GGCTCCATGGTCGTCCAGTCGCTGGAAGAGCAGGTCGC 107418 37 100.0 38 ..................................... CTCCACAACGACACGACGCTGCACCTGCACCCCGCCAG 107343 37 100.0 38 ..................................... GGTCTCGGCATCCCGGGCTTCGCGATCCGCTACAACGA 107268 37 100.0 40 ..................................... ACCTACGAGATCGACGGGTCCGCTCGGCCGACGATCAAGG 107191 37 100.0 39 ..................................... GAGCGCAGGGCGTGCGCCTGGATGCCCTTGCGGGCGGCC 107115 37 100.0 39 ..................................... GGAGACCCGTTCACGCAACCCGCTGAGTGGGTTAGTCTC 107039 37 100.0 41 ..................................... GAGATGCGCCAGGCCGGCTGGATCGACGTGGACCTCAGCGA 106961 37 100.0 40 ..................................... GCCGCCAGGCTCCTTGCGGAGCAGTGGCAGGCGCGGTGAC 106884 37 100.0 38 ..................................... AAGGGCTGACAGGAGCGCCAGCACCATGACGAAGACCA 106809 37 100.0 41 ..................................... AGGGTGTCCGGGCGGGCGGCTCGTACAACGGCCTGTCCGGC 106731 37 100.0 41 ..................................... AGGGTGTCCGGGCGGGCGGCTCGTACAACGGCCTGTCCGGC 106653 37 100.0 36 ..................................... CTGCGCCGCCAGCACCAGACGCTCAAGTACACCGAC 106580 37 100.0 37 ..................................... TCCGGGCTGGGCTTCCTCGTCTACCTGATCGACTCGG 106506 37 100.0 38 ..................................... TACGGCTCAGCGGGCATCGGGGGTGCCTCCGGTGACCG 106431 37 100.0 37 ..................................... ACCACGAGGTGCCACCGGTGACCGCGCGGAAGAAGAA 106357 37 100.0 40 ..................................... CCCTGGTTGATGTCGGCGGCGACACTGGCCGGATGACCAA 106280 37 97.3 41 .................G................... GCCGCGCAGCAGCTGATGGCGCTCGCCCCGGCGGCCCGGCC 106202 37 100.0 39 ..................................... CCGGGACGTGGACCGGGCGCTGCTCTGCGCCGTCTACGA 106126 37 100.0 39 ..................................... TCCTGCTCGGTCAGCCCCTCGATCACCTCGCGGGCCGGC 106050 37 100.0 38 ..................................... GGCTACGGCGTCGGAGGACCCCTCGCGGTGCTGCCGTT 105975 37 100.0 37 ..................................... CGGCCGCCGCTGTCGCAGGTGGTGTTGGGGCAGATGG 105901 37 100.0 37 ..................................... GATGGCGCGCCGGTCCGGATGGTGAAGGTCTGCGTCT 105827 37 100.0 69 ..................................... TACTGCGCGGCCGAGGGCGACCACTGCTGCGAGCCGTGCCTGCGCCCGCCCCCGCCGGCGGCCGGGGCG 105721 37 100.0 36 ..................................... GCCGGCTGGCCCAGCCCGGTCGTCGGCACCTCGCCC 105648 37 100.0 36 ..................................... GCCCACCGCGGCGCGACGTGCACCCGCCAGTGGGAC 105575 37 100.0 36 ..................................... AGTTGAATGCGGCGGCCAGGGCCGCGATCTCCGCCC 105502 37 100.0 38 ..................................... ACGTTCCGCCCGGACTGCGAGCTCGCCGGCCGGTACGC 105427 37 100.0 37 ..................................... ACGTACGCCACCGTCGCCGCCTCAGCAGCTCCACCCG 105353 37 100.0 38 ..................................... TTGACACACGAGGACGAACACCCGTTCGAAAGGCCGAC 105278 37 100.0 38 ..................................... ACCGGCTCCCAGCCGGTCACCACGCGCGTCGCGTCCGA 105203 37 100.0 38 ..................................... ATGTAGCGGGTGCCGAACTCGAGGGCCAGGCAGTACGG 105128 37 100.0 39 ..................................... TCGCACAGCACCACCCCCGCCCCCGGCGCGGCCGTCAGC 105052 37 100.0 36 ..................................... CCCGGCGGCCCGGACCGGCCGGACTCCGAGGGCCGC 104979 37 100.0 38 ..................................... ACAGTGGTCGGCCCGCCGACCGTCATGCGCGCCGCCCC 104904 37 100.0 39 ..................................... GGGGTCATCGCCTGCCGCCGGCGCACGCCGAGCCACAGC 104828 37 100.0 37 ..................................... GCGTAGGCGACGATCGCCGTGACGCCGTTGACGGTGT 104754 37 100.0 38 ..................................... ACAGTGGTCGGCCCGCCGACCGTCATGCGCGCCGCCCC 104679 37 100.0 37 ..................................... GCCGCGCTCATGCTCGCCGTGAGGATCCCGGCCACCT 104605 37 100.0 39 ..................................... TTCACGGCGTACTTGTAGACCTGCTCGTCCTGGGTGCGC 104529 37 100.0 39 ..................................... TCCCGGGAGGCGACGCCGGAGGAGCAGAAGCGCATCGAC 104453 37 100.0 42 ..................................... ACCTTGTTGGTGAGCACGGCGACGAAGTCGGTCAGCTCGGCG 104374 37 100.0 37 ..................................... TTGTGTCCCATGGCGCGAAACTATCCGTCAGTTGGTT 104300 37 97.3 37 ..............................C...... CGCTGGGCGTACCTGACGATGACCTCCGGGGTGTCCG 104226 37 100.0 37 ..................................... GCGGACGTGAGCCCGGCCGCGCCCACCTCGTGCACGA 104152 37 100.0 37 ..................................... GGGTAGATCAGCCGCTCGGTGGTGAGCACCAGATCGT 104078 37 100.0 40 ..................................... TCACCAGCGAACCCGCCACCGACCCCAAGGGGAGCTGATG 104001 37 100.0 39 ..................................... CTGATCGCGAGCCCGGCCATTCGCTCGATCTTCCGCAAG 103925 37 100.0 38 ..................................... CGCGACCACACCCACATGCCCGTGTCCCCCAGGGCGCG 103850 37 100.0 41 ..................................... CGTACGCCTCGAGCAGGAAGGCCAGCACCGCGCGGGTGAGG 103772 37 100.0 39 ..................................... GCCAGCGGTGAGCAGCTGTACGCGCACACGTGCAGCAGC 103696 37 100.0 38 ..................................... GCCGAAGTCCACCGTTACCAGGCGATCATCGTGGAGAA 103621 37 100.0 39 ..................................... GGGGTGCCGCAGTCCCGAGACCGGTACTACTGCGTTTTC 103545 37 100.0 38 ..................................... GTCGGGGTGAACATGCCGCCAGCACACGAACCCGTCGA 103470 37 100.0 37 ..................................... AACTCGCGGAACAGGACACCGCCCGGTCCAACGATGG 103396 37 100.0 37 ..................................... GAGAAGTGCGTCAGGCGACCGGCGGTGTCGGTGGTGA 103322 37 100.0 35 ..................................... GTTCGCTGCTGCACGGAGCACTGCGGCGGCCATTC 103250 37 100.0 39 ..................................... CTGGAGGTCGCGCACTCCATGGGCGTGTCCGCAGGCACC 103174 37 100.0 37 ..................................... GGGTGCGTCGCGAGGATCTCCGTGACCCGGGTGCCTG 103100 37 100.0 41 ..................................... AACGAGGTGTCGAGCGGTCAGTTCACCGTGCCGGCCTACCC 103022 37 100.0 37 ..................................... CTCCAGCGCATCGAGCAGCGCGTCGACGAGGTGGAGG 102948 37 100.0 38 ..................................... GACAGGTCGACGCCGGCCTCCGCCCGCTCCTGCCGGCT 102873 37 100.0 39 ..................................... ATCAGCTGCACGCCGGTGAGCTGCCCGTCGCTCTTGGCC 102797 37 100.0 37 ..................................... CAGACGCCGTCGTCGGGGTTGGATGACACGGTGGTGC 102723 37 100.0 36 ..................................... ACCCAGTCGTCGGGGAGTGTGCGGGCCAGTTCCCGG 102650 37 100.0 39 ..................................... TGCTGCCTGCCCGATCTGCCAGTCGCGCGGGTCGTCCGC 102574 37 100.0 36 ..................................... TTCGGGTCTCCGTCGTAGTGGATGCGCGGGTGCTCA 102501 37 100.0 38 ..................................... GCGTTGATCGCAAGCGGAGAGTACGAGATCCGGTACAC 102426 37 100.0 39 ..................................... CTCTACGTGTACCGGACGCGCCGGCACCTCGGGTGGGGC 102350 37 100.0 39 ..................................... GACAGGTGTACCAGGCCGGTGGTCAAGGCGACGGCGGCG 102274 37 100.0 38 ..................................... TGATCGTCCCCACCGCCCCCGGCCGACCGGCCGGGGGC 102199 37 100.0 37 ..................................... GGCGGCTGCTGGGGGACCACGTACACCGGCTGCGGTC 102125 37 100.0 38 ..................................... AACTTCCTCCCAGCCGGTGAAGCACCTAAGCACAGCAC 102050 37 100.0 37 ..................................... ACCGCGAGCAGCGCCGGCATCCCCACCTCCCGGGACC 101976 37 100.0 38 ..................................... GTGTCCGGCGACATGGCCACTCTGGGGCGGCTGGTCGC 101901 36 97.3 37 ..............-...................... CGCAGACCCTCGGCGCGACGCAGGTCCGCAACCCGGG 101828 37 100.0 39 ..................................... GGGTCTGCTGGTGGTGCGGGTTGGTCACCAACACCCGGC 101752 37 97.3 37 ..............................G...... CCCGTATCCCTCCGATGTGCCGCCCGTCCAGAGCCAG 101678 37 100.0 38 ..................................... CACAGTTCACGAGCAAGGCGCTCGCCGTCAGTCGGGGA 101603 37 100.0 37 ..................................... AACATCTGGGGCGGTGTCGGCCTGGCCATCGCCGGCG 101529 37 100.0 38 ..................................... CTCGGCATCCCGATCGACGGGGAGATCAACCGCCGGAG 101454 37 100.0 39 ..................................... GGCGTGGTCGAGAACGCCTTCGTGCGCGTCATCGACGAG 101378 37 100.0 38 ..................................... GCTGAGTACGACGTCGCGGGCGGCGCGATCACCGCCGT 101303 37 100.0 38 ..................................... GGCATGTACGTCGTCGACGCGACCTCGCGCAGCCCGGC 101228 37 100.0 37 ..................................... TGCGTGCCGGACAGCCTCGACGTCGGCCGCGACGACG 101154 37 100.0 38 ..................................... GACGGTGACCGTCTGGTCGAGACCCACGACGACCCCGA 101079 37 100.0 38 ..................................... ATCCGCTCCTCTCCCACCTGGAAGATCAGGTCTCGGGT 101004 37 100.0 38 ..................................... ACGGCCGTTGACCATGGGACGGAAGCCGAGCCGCGCGA 100929 37 100.0 35 ..................................... CCCGTCGTCGGCCGGTCGGGCGTGCGGACCTGGTT 100857 37 100.0 35 ..................................... CCCGTCGTCGGCCGGTCGGGCGTGCGGACCTGGTT 100785 37 100.0 35 ..................................... CCCGTCGTCGGCCGGTCGGGCGTGCGGACCTGGTT 100713 37 100.0 38 ..................................... TGGTCGGTGGTGCCGCGACCCTGCAACGGGATCTGCTG 100638 37 100.0 38 ..................................... TGCGAGGCGAGCTGCCGCAGCCCGCGGGCGTTCAGCGC 100563 37 100.0 38 ..................................... CTGTCTAGGTGCCTGACTATGTGCATCGCTCTCCGGTG 100488 37 97.3 38 ...A................................. TATCCGTGCTCGGTCCGGTCATCGGCGCGCTGGTCGGC 100413 37 100.0 38 ..................................... GCTGGGCCGGGGTGCGGGAACCGGTCGCCGCCTTGAGC 100338 37 94.6 39 ........................GA........... GATTGCGGCACGCTCACGCTGGTCGAGGATGGCGACCTG 100262 37 100.0 40 ..................................... GCCGCTGGCAGAACGGGATGCGCTTCTCACGGAACTGCTC 100185 36 97.3 35 ..............-...................... AAGGGGATCGCCGCCGTGATCACCACCGTGTGGAA 100114 37 97.3 37 .......................A............. CAGTACGTCCCGGACCGGCTGTCCGACGCCTCCGTGG 100040 37 97.3 41 .............T....................... TCCAGGATCGCGCCCGCGATCTCGGCCGGCGCGTACCCGAG 99962 37 100.0 38 ..................................... GCCGTCTCCGACGTGTCGTACCGGCCCACCCCGACCGG 99887 37 100.0 40 ..................................... TCCTTGGCGTCGCTGGGGGCCTTCCCGGCGGGCGCCGGGG 99810 36 91.9 38 G.............-.........T............ TTCCGGGAGGCCGCCCCGCCGCCGCCCGACCCGGGCAC 99736 37 97.3 39 G.................................... GTGGAGGTGGGCGTACGGGTCGGGTTCGATGGTGAACGC 99660 37 97.3 39 G.................................... AGCGACGGGCGGATCGAGCTGCGGGCCGCGCCGGTGGTG 99584 37 97.3 40 G.................................... CCCACCAGGCTCGGGGGCACTCTCTCCGATGTGCAACGGA 99507 37 97.3 39 G.................................... AACGGCTACCTCGCCGAGCACCGCACCCGGGGCCGCCGG 99431 37 97.3 33 G.................................... CACGTCGACTCGCTCTCCATCGGCGGCGGCTGG 99361 37 94.6 38 G..........A......................... AGGAAGTGCGCCAGGACCGCGCGGGCGATCTGCTCGTC 99286 37 89.2 37 G.CT.......T......................... GCCATGTCGGCGGCGTTGCCGTCCTCCACCGCCGCTG 99212 37 91.9 37 G..............G.G................... GACGGCCACCCGATGCGCGACGAGATCTGGCTCCGCC GA [99192] 99136 37 94.6 38 G..............G..................... ACGCGGACCGGGCCGGTCACGAGGAGGGCCGTCGAGAG 99061 37 91.9 38 G.....T........G..................... AGTGGCTACGGCACCCCGGCATCACCCGCCGCGCCCGC 98986 37 94.6 0 G..............C..................... | G,G [98961,98969] ========== ====== ====== ====== ===================================== ===================================================================== ================== 153 37 99.4 38 CCTGCGCCCGCCCCCAGCGGCGGGCGAGGATCGCAAC # Left flank : TCCTGCCGCTTGTACAGGCACGACTGCTCGCCCGACACCTGCGCGGCGACATCGAGAAATACCGCCCCTGGACGGTCAACTGAGATGGACCTGCTCATCACCTACGACGTCGAGACCGCCACACAAGCCGGCCAGCGACGCCTCCGAAAGGTCGCAAAGATCTGCGAAGCGTACGGCCACCGCGTCCAAAAATCCGTCTTCGAGGTCGTATGCCGCGACACCGACAAGATCAGACTAGTCGACGCGCTCGCCCGAGCCATCGACCCGACCCTCGACAGCGTCCGCATCTACCGACTACCCGCACAGGCACTGGACGACGTCGAACACCTCGGCCGAGCACGGCAGGTGGATCCCCGGGGCCCCTTAGTGATCTAGGAACCTCCAGTACCCGCGCTCAGCGCAGGGGATTCCGAAGCGCTGAACTCCTCAAATCATGACTAAACTGGCGCAAGATCGCTTCGGAGCTGTCGTCCGTTCCGCATTTCGGCTTTTCAAGAGCC # Right flank : CACGTGTACCGGCGCGAGTCCGACACCGACCGCCGGCCTCACCCAGCCCTGGAGCTCAGGCCCGGTCGAAGGCCATGTCATCCGCATCAAGACGATCAAGCGACAGATGTATGGCCGCGCGAACCTTGACCTCCTCCGCAAGCCCGATCCATGGGCTGATAGCTCTTTGCCTCGACGAACATCCGGATCGGCAGGGGGAGAACGGCGGTGTGAAAGGGAACTCGCCCAGCACGTCGGCTTGGTGGTGAGCGCCTCGTCCGCGCCCGGATGGGGTGCCTGGTGGGGCTGCGGACGTCGCGGCATGGTCGACGGTGCCCCCGTTTACCCCCCGAAAACCCCTGCCAAGGCTCGACTACCAGTGACGGGCGTTGGTGAGTCGGTGATGGCGTCTGTGCAGCTCAATGGTGCATATTGACGATCAATGACAAGTTCGGGGTCGTGACGTTCGGTAACCGTGTGTTGCAGGGTTCGAATCTCTTGAGGGTCATCGGGGCGGGTTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTGCGCCCGCCCCCAGCGGCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.20,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [31-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //