Array 1 163059-162359 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGR01000006.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N45927 N45927_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163058 28 96.6 32 -............................ TTTATTCGCCGAAAGAGGGCGACATAGTTATT 162998 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 162937 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 162876 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 162815 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 162754 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 162693 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 162632 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162571 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162510 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 162449 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 162388 29 96.6 0 A............................ | A [162361] ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51089-52093 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGR01000016.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N45927 N45927_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51089 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 51150 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 51211 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 51272 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 51333 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 51394 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 51455 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 51516 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 51577 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 51638 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 51699 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 51760 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 51821 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 51882 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 51943 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 52005 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 52066 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 68362-69427 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGR01000016.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N45927 N45927_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68362 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 68423 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 68484 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 68545 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 68606 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 68667 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 68728 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 68789 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 68850 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 68911 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 68972 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 69033 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 69094 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 69155 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 69216 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 69277 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 69338 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 69399 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCAGTGTTCCCCGCGCCAGCGGGGATAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //