Array 1 32474-33432 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFHJ01000002.1 Akkermansia muciniphila strain An78 An78_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 32474 36 100.0 30 .................................... AGCACTACAGCATAATATCCAGAGCCAGAG 32540 36 100.0 30 .................................... GTCTTTGTTCCTAATGGAAAGAACACCGTT 32606 36 100.0 30 .................................... CTTCGCATAACACACATAATGCAAAGTCGG 32672 36 100.0 29 .................................... TCATCACTCTTTCCGGCGTTCCCCTCATC 32737 36 100.0 30 .................................... CATTTGACAGGGGAGACTTCCATAAGCTCA 32803 36 100.0 30 .................................... GCTGGATTATGCCGCCGCCATATCCATTGT 32869 36 100.0 30 .................................... CCATGATTCCGCGGCATACATGGACAATAA 32935 36 100.0 30 .................................... AATATCTAAAATCCTCAAACCTCTACACCG 33001 36 100.0 30 .................................... TCGGCTGCGTTTTGCTATCGGTAGCATCAT 33067 36 100.0 30 .................................... GGGCCGTTGTAGCCGGGTACAAAAAGACGG 33133 36 100.0 30 .................................... ATCCCTTCGTGGTTTTCGATTCGCCATACT 33199 36 100.0 30 .................................... CAACAAGATTGAGGGGTATCTTCACTTCTG 33265 36 100.0 30 .................................... GGCCCCAGGACGGATTGATGTCCAGGCACG 33331 36 100.0 30 .................................... CCAAATTTCTTATTGGTATGAGCCACATAT 33397 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 100.0 30 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAC # Left flank : CTGACGTGGAAGCATATCAATCTGAAATCCGGCCTGGTTTCACTGGCGCCCACCCATACCAAAACGGGAGGGAGCCGCCATGTTTCCATCCTTCCCGTGCTGGGTTCCATCCTCAGCCGGATGTCTTCCGCCGGTTCCCCCGCCCGTTCCGTCTGCCCGCCCAACTGGGAAAAGAAATGGAAGGAAGTAAGGCGCCGGTCCGGCATCCTGAAGAAAAGCGGATGGGTTCAGGACGTGCTGAGGCATACCTACGCCTCCTACCACCTGGCCCATTTCTGCAATCAAAACCTTCTCCAGAAGGAGATGGGACACTCCTCCCCCTCCCTGCTGCTGGCCCGCTATCTTAATATGGAGGGCATCACCTCCGCAACCGGCGCCATGTTCTGGACGCACAGCTTTGTTTCTCCCGCTCCGTTAAAGGAAGACTGACAAAAATCCGTCTGGAATTGCGCGGCCAAAGGCGGAGCAATCCCCTGCGCCATCAGACCGGAGGCGCATTT # Right flank : CAGATACTGTGCCTTATTTTTATGTTCAGCGACTTATAAAAAAATACGGCGTCCGATATTTTTACCAGAGGAGCATCTGCTGAGGCAGGGAAACCTCCTGTCGGGGACAAGACCTGCCATGAAAAACGAACATCTTATCCCACTGGATATTCGTAACGAAAAGACAGCGGACAGAACCATCAGGCGGTATCATTTTCTGGATTCTGCGGGAGTGGGTAGCCATTCTTTCCTGAGTAACGCACGCGCGGGCATAGACGCTATACTGAATCATCGTATAGCCGTCTTCTAAAAGAGCCTTACGGAAATATTGATAGTTTTTTTTATCTTCCGGCGTGGTTGTGGGAAGATCAAAGAACACAACTAGCCAGCCCATTTTATAGTTGTCATAAGCCATGGTTCATACGGTTCGGATTGTCCGGCAAGAACTGCTTTGCGGAAACTGCGGCAAACGGCCTCTACCGCCGCTTTCAACGGCAGCTGTTTATCCCGGTACATGACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 102226-102055 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFHJ01000002.1 Akkermansia muciniphila strain An78 An78_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 102225 33 78.8 37 .CGA.GT.A.A...................... CTGTACCCCGGATTCCGGAGGATAAAAACAATAGAAA 102155 33 100.0 35 ................................. TATTGCTCGTTGCTTGTCTGGCCGTCACAACATCC 102087 33 93.9 0 ...........T....................A | ========== ====== ====== ====== ================================= ===================================== ================== 3 33 90.9 36 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CGGCGGGTACGGAAGGCTTCGGCAGCTGCTGCGACGGCCGGATCATGTGCGGCCTGTGCTACGGGTTCACGGGTTCCGCGTTGCGCCGCATGCTGGCAGTTCTGGACCGTCTGCCCATTGGGGGTGACGATCCGGAGGATATAGCAACGGGACGCTTGGCCATGGCCGCAGGGGTTCCGCTTCACATAGAGCGGCCCTGGGCGGCATCACGGCCGGAGGGGCGCTGGGCGGCCTACCGCTGGCCAACGATGCCGGCAGTAGCCAAATATGATCGGCTGGACGTGGTGACGCTGGGCACTCTTCACATGCCCCGGCAGCAGATGGACGCAGCAGAGTTCATCCGCGTATTTGACGAGTTGGCCTCCAGGGACGTGATCGGGGAGTAGAGGGCAGTTCAAGCCGTTTTCAAGGGAGGTGCAACCAGGTTGCAATGGGGATGCAGCGGACAGACGTTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGCATT # Right flank : AGAAAAAGCTCTTCGAGCTTGTTTGGTCTAGAGAGCTTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGATCCAGGATGGGGTCCTGTGGTGCAGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCCCCGTCCTCGTCCCGGAAAACACGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGAGGATTTTTCATGTGCCGGGGAATGTATTTTTATCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCCTGCGCAATAAGATCCTGCAGGATATTGGTGACGGTATTAGGGTGCAGGCGTGTGGCTTCCGTAATGGTG # Questionable array : NO Score: 6.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.55, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //