Array 1 46602-44497 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMP010000014.1 Chromobacterium vaccinii strain A7 Contig_14_68.5521, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 46601 29 100.0 32 ............................. AAACTTTACATATGGCGTAATGGGTCACGGAT 46540 29 100.0 32 ............................. GCAAGAAATGACTGACAATACACTGATGACTG 46479 29 100.0 32 ............................. GGAATGGACCAGTCTGAACTTGCACGCCGCGT 46418 29 100.0 32 ............................. CTAATACCCATCTCCTCGGCGACCTCTGATTT 46357 29 100.0 32 ............................. TTGTCGTTGAGCCAAGTCCATATTCGACCCCA 46296 29 100.0 32 ............................. CTGCGAGCGGGTATTCCGTCCCGACTTAATCG 46235 29 100.0 32 ............................. CATCGGTGACATGTCAGCCTCCGTTGGGCGTA 46174 29 100.0 32 ............................. CTGATAAACGATTTGCTGCTATACGCGGATCG 46113 29 100.0 32 ............................. GAATATCGCTATCTCTCCCCGGTTTTCACCTA 46052 29 100.0 32 ............................. TAAATCGCCCATTTTGAAGGGGCAAACCTGGA 45991 29 100.0 32 ............................. CTTGTCCAGGTATTCAGAGACAGTGCCATCAA 45930 29 100.0 32 ............................. ACTTTGCCGAGTACGCGCACGCCAAGCGCGTT 45869 29 100.0 32 ............................. TCCACAGATTGCCCAGCGGCGCGTGGCGCGGT 45808 29 100.0 33 ............................. ATGTCTGGGTGGAGCGAGCATCCGGCGGCCCAC 45746 29 100.0 32 ............................. GACTGCGAGTTGTTGGAACGGCTCGCTATCGC 45685 29 100.0 33 ............................. TTGCCCACCTGCTCGCACACCACCAGCGCGGAG 45623 29 100.0 32 ............................. CTCAGCTCGACGAGCAGCGCGGAATTTAGCCT 45562 29 100.0 32 ............................. TAGTGCTGAGTCACGAATTTTGGGATCAGGAA 45501 29 100.0 32 ............................. AGGAACCAGGCGGTGTCCGAGTTCAGCCACGG 45440 29 100.0 32 ............................. ATCAATATCACCAGGACTAGCCTTGTCAGTTA 45379 29 100.0 32 ............................. AGGCCCGCTCATGAACAGCCACTACACCCACG 45318 29 100.0 32 ............................. CAGATTAGATAAATTGCCGCCGTCAGTATTAT 45257 29 96.6 32 ............................C AGACCAGCGGCACATTCAATGACTGCGGATTG 45196 29 100.0 32 ............................. AATGAATCCAGCAGATAGGTCACGTCGCCGAT 45135 29 100.0 32 ............................. CCCAGCGGCACCATCCCGCACTTGCTCGACCA 45074 29 96.6 32 ...........................T. GTTCTGCGCCGCGCGGTTTAATTACACGCGCT 45013 29 100.0 32 ............................. AAGTTGCTGACGTCGCCGTCCAGGTCGTTGTA 44952 29 100.0 32 ............................. TCGTTGATTACGGTCTTTGTGGTCTTGCCATT 44891 29 100.0 32 ............................. CACCAGCTCCAGCAGCTCCGGCGCCACCAGCT 44830 29 96.6 32 ..A.......................... GTTCAGGTCCAGATCCTCGGCCAGCCGCCGCT 44769 29 100.0 32 ............................. TTCTGGCGGCTCGCGTTATACCGCGCTGCTGC 44708 29 100.0 32 ............................. TACCAGCGCGCCGTCCGCATCGAGCTGCCGGA 44647 29 100.0 32 ............................. GCTTAGCGGCGATCAATTCCCACTTCCTGGAC 44586 29 100.0 32 ............................. CATGGTGCCAGGGTTCAATAATCGCAGCCATG 44525 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.6 32 CTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : CGGACATCGAAACCATGCTGGACGCCGGCGGCCTGGACAAGCCTGAGGCGCAGGGCGTGGTGGACGCGGCGTTTCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCGATCTGGTTGCTGGAAATCCGCGCCGGGGTCTACGTTGGAAACTACAACCGCAAGATCCGCGATTACCTATGGCAGCAGGTGGAGGGCGGGTTGGACGATGGCAACGCGGTGATGGCTTGGCAGGCCGCCACCGAGGCCGGCTTCGACTTCGTCACGCTTGGGGCCAACCGCCGCATGCCGGCCGAGTTCGACGGCGCGAAATTGGTGTCTTTTCTGCCGCCGCCTGTACCGGAAGAGAGCAGTGAATAGCATGAGGATCGCTTTGTTCCAGAGGGCGATTTGGCTCTTTGAAAATCGGTAGATTTTTAGGTAGCGTTTTTGTTTTTCAAAATCAATTGCTTGCAATTGGT # Right flank : GATGCCGCTGTCAGCTACGCGCCGATTTTTACCTGTGAACCGCAGTCCCGCCACCCGCTAAAGACCGCATGCGCGCGCGCCACGCATGGAAAGGTTTGTCATCCAATCTTTCCGCTGCTTGCGGCGCTTGGGTGGCGCTTCCTATGCTGCAATGGTTGAGGCTGAAGGAGTCGCCATGCAGCAGTTGAGAACGGGTTTGCTGGTTGCCGCGCTGTTTCTCGCGGTGGCCTTTGTTTCGAGATCGCTGGCCAGTTCCGTCACGGAAACCATGCCGGTCTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGTTGATCTCCCCCCGCTGGCGCTGGCCGGCCATCCTCGCCGGCGTGTGGCTGGGGTCGGTGATCTGGGGCATGGTTGCGCATGGCCTGAGTCCGGCGGGGGCGGCGGCTTTCGCCAGCATCGAGGTGGTCAGCGGCGCCATGGGCTGCTGGGTGGCCAGCCTGGGGCGCAACGATCCGGATACCCCGGCCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 58816-56957 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMP010000014.1 Chromobacterium vaccinii strain A7 Contig_14_68.5521, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58815 29 100.0 32 ............................. GGATTGGAGTTCTTCTCGTAGGGTCATGTTGG 58754 29 100.0 32 ............................. GGAGGCTCAGGCAGGGATAAATTACCGGGCAT 58693 29 100.0 32 ............................. CCCATTCGTTTCAAAAATGCCGGTGGATCAAA 58632 29 100.0 32 ............................. CCGAATTCGAGGTCGAGCTTGCCGGCGCGGGG 58571 29 100.0 32 ............................. CTTGGGCGCGCCAGTGATCATCCCCCACACCA 58510 29 100.0 32 ............................. GCCGTCACCCATGGGCATTCGTCCGGGTGCGG 58449 29 100.0 32 ............................. TACCGTCGCGGTGTGGCGGAGATCACCGACAC 58388 29 100.0 32 ............................. AGCCATGCAGGCCAAGTCTACGGTTTCCAGTA 58327 29 100.0 32 ............................. TTCCAACTGCCGTTCTCCGTCCACGCAGTATC 58266 29 100.0 32 ............................. CAGGCTGGACGGGAAAATGATTCCAGACCACG 58205 29 100.0 32 ............................. GCCGCCTAAGGGCGGCCAAACTTTTGGAGCAA 58144 29 100.0 32 ............................. ATGCTGGAGATGGACGCCAACCCCAACACGGT 58083 29 100.0 32 ............................. ACATGTTGCGCTGCGGGCGGGGGCGAAGCCCC 58022 29 100.0 32 ............................. TTGGTGGGCATCTATGATTCCAGCGCGCAGGG 57961 29 100.0 32 ............................. AGCCCAAATCATGACGCAACCCCAATCGCTGG 57900 29 100.0 32 ............................. CCGACGAATCCAGCGCCCGACGCCGTGGCAGA 57839 29 100.0 32 ............................. GTGGCGCACCAGCACCTGCCACAGCTGCAACC 57778 29 100.0 32 ............................. GGGGATCGCATTGTCGCCAGCATTGGCTACGA 57717 29 100.0 32 ............................. GCAGGAATGGCTGAGGATTTGGCAGACAATGC 57656 29 100.0 32 ............................. GGATACGACGAATATGCATTCTCGAACAATTT 57595 29 100.0 32 ............................. CCGTGGCAATCTCGCGAATAAGAAATTGCTGG 57534 29 100.0 32 ............................. AATACCGTGTCGATGCCCAGCGGCTCGCAGAG 57473 29 100.0 32 ............................. AAAGTGCCCGGCGGCGGGACATATGGAAACAC 57412 29 100.0 32 ............................. ATCGGTAATGACGGTTTTATTGGTTTTACCGT 57351 29 100.0 32 ............................. ACCGCCAGTCGGCGGTCTTGTGGGCTTACATC 57290 29 100.0 32 ............................. CCCTACCAGTCGAGAGACGGTATCAGCGCCAC 57229 29 100.0 32 ............................. AATTAAAACATTGACCGCCCATCATAGTGCCC 57168 29 100.0 32 ............................. CCCGAAGGGGCGAGACTCGCCGGCCTCTTGGC 57107 29 100.0 32 ............................. AAGGTGCAAATCCGCGCCTACGGCTACAGCAA 57046 29 96.6 32 ............................T CGGGTTATCTCCACGTCCAGCGCCAGCTCCAG 56985 29 93.1 0 .........................G.T. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.7 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : ACCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCTTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCCACCCAGGCGCTCACTGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGCTTTGCCGACGGCAGCCGCCTCACCGCCAACTTCGCCGCGGAGCCTGCCGTCCATGGCAAGCAAACCCTGCCGCCTCAAAGCTTGCTCGCCGAGCTGGCCGGTCAGTCGTCCAGGCTGCTGCTAGTGGCGGATTGCGCCGGCAAGTAAGCGGCGGCGATAATGCCAATGTCGTTTGCTGGCCATGGGGCGACGGTTTCCCATGGCTGGCAGACGGCATCGCCAGGTTATTCAATTGATCATTTTTTAGGCTATAAAATCGGTAGATTTTTAGGATGAGTTTTTATCTTTAAAAATCAAAATGTTGAAATTGGT # Right flank : CTCGAAACGCCGCCGATGGATTCTGCATTCAAGTATTCCGCACCTAATGTGGGGATCCATTGCCTGGAGTCTTACCGCTATATCAGTCGTTCAAGAGTTATCCATGCCGGCAGGGATGCGTTCCAAACTGCCTGCCATGCCGAGCGGCGGGTGATTCACATCCGATCGCCGGTTTCGTTCAAGTGGACATGACGATGCTTTCCGCCCATGCAGAACGAAAGGACTGGCTATGCCCTGGATGACCGACTTGTTCCGTACCGCCAATGACGCCAGAGGTCCGTTTCCTGATCGCCCCTTGTCGCGCGTCACGCTGCCCGGGACGCACGACTCCGGCTGTTATGTGGACCGGGCGGTGAGCAACGCGCTTTCCAAAACCCAAAGCCAGGACATCTACGGCCAGCTGTTGGGCGGCATCCGGTATTTCGATATCCGTCCATGCGTCAAGGATGGGCGGTTGTTCACCTATCACGGCGAGTTTTATACCGGCGGACCGATAGATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 67336-66086 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMP010000014.1 Chromobacterium vaccinii strain A7 Contig_14_68.5521, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67335 29 100.0 32 ............................. CAATGGTAATCAATTCACGCTGTATGCCAGTG 67274 29 100.0 32 ............................. TTCGCAGCAGAGCTAAAGAAGATGTCGCAACA 67213 29 100.0 32 ............................. TCAAACCCCATCCGTCTCTCCTTGGATTTCTT 67152 29 100.0 32 ............................. TTTGTTTCGCAAGCAGCGAAACTTCTGCTCTG 67091 29 100.0 32 ............................. GGCAGTCGCCGCGCGCGCTGGACATCGACAAA 67030 29 100.0 32 ............................. GTGAACCAGTACTTGTCCTCGTCCGGCAGGTT 66969 29 100.0 32 ............................. GGCAAGGAGTTATTGCAATGGATTGAACTGCC 66908 29 100.0 32 ............................. TTCTACACCGTGGTGGCCGATGCCATGGCGCT 66847 29 100.0 32 ............................. TCATGGCCGGTCACCATCCCTGAGCTGTATCC 66786 29 100.0 32 ............................. CGCCCTCAATGGGACGCGCCTCTTGCACGCAT 66725 29 100.0 30 ............................. TTGAACCCGATCTGGCTGTATACCGGCCGG 66666 29 100.0 32 ............................. GTAGGGAATGACGGTGAGCTCGCCAATGGTGG 66605 29 100.0 32 ............................. CGCCGCCGGCATGCCGGTTTTATTACCGGAGC 66544 29 100.0 32 ............................. CGACGCTGGCATGCCGGTTTTATTACCGGAAC 66483 29 100.0 32 ............................. TCACTCATTGGCAATGAGGGAGGCTACAGCAA 66422 29 100.0 32 ............................. GCGGGCATAACCGGCACTGGCGCCGGCAGTTT 66361 29 100.0 32 ............................. CCAGTATTTGCTCTTCGGATCTCCCGCAGATC 66300 29 100.0 32 ............................. TCCGATGCGATCGCATGGGCAACTCAAATGGA 66239 29 100.0 32 ............................. TCAGCGTAACCAAGAAGGGCGCGCGCTGGGAG 66178 29 100.0 32 ............................. GAGGCCGCATGATCCCGCTCCACCTGCACGAC 66117 29 93.1 0 ..A...........T.............. | GTT [66090] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : GCCAGAATGCGCGCCAGCGTGGTCTTGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCGAGGCTCAGCGGCTTGCCCGGGCCGATCAGATGCTGCTGGCCGATCACCTGATCGAGCGCCTGCGGACGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGATTTGGGCGGGATGGAGCGGAGAAACAGTATACCAGTTGGGGGCGGGCATGAAAAAAGCGCCAGACAGACGCTTTTTGCTTGCATGTCGATGGAATGACGGTAGGCTATGGAGCCTGGAAACCTTGCCGTGCAAGCTCCGTGCTTCGTTTTTCGAAATGATGGCGAAGGGAAGATTTCCTGATGCCGTGTGGCGCTTGGTGGGACGATTTGAGCGGCGGTTTTCGACCAGAAAAATCGGTAGAATTTTGAGGTGGTTTTTTATCTTTAAAAATCAGCAGTTTGAAAATGGT # Right flank : GCGCGGGCTGGAATGGTGTCGCGGCGCTGCCAGCCTGGCCGCGTCCGAAAACAAAAAAGCGCCCGTGGGGCGCTTTTTTCGGCACAACAATCCAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAAGTGGTGCCAACCAAGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGACCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTAACCTGGCAGATGTCTTCCATGCCGTCGACGATGAAGTTCAGGGTATCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGGTCCAGCACCACCACGTCGAACTTGTCGTCCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //