Array 1 13368-14310 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNAR01000061.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STy013 Cotig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13368 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 13429 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 13490 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 13551 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 13612 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 13673 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 13734 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 13795 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 13856 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 13917 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 13978 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 14039 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 14100 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 14161 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 14222 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 14283 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 120222-118379 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNAR01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STy013 Cotig_145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 120221 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 120160 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 120099 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 120038 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 119977 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 119916 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 119855 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 119793 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 119732 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 119671 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 119610 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 119549 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 119488 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 119427 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 119366 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 119305 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 119244 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 119183 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 119122 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 119060 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 118957 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 118896 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 118835 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 118774 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 118713 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 118652 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 118591 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 118530 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 118469 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 118408 29 96.6 0 A............................ | A [118381] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //