Array 1 31-332 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JTIX01000213.1 Lacticaseibacillus rhamnosus strain Lrh33 CNCM-I-2493_contig00235, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
        31	    36	 100.0	    30	....................................	TGATGGTTTTGCCGTCCGGCTTGACAATCC	
        97	    36	 100.0	    30	....................................	ATTTCGGCGATGGCCGTCTATCTAAAGATA	
       163	    36	 100.0	    30	....................................	GGCCAGCGACTGGGTGCAACAATTACTGTT	
       229	    36	 100.0	    30	....................................	CTTAGAATAGCTTTATTGATTTGGTTATTT	
       295	    36	  83.3	     0	....T..................AA.C....T...A	|                             	C,G [321,327]
==========	======	======	======	====================================	==============================	==================
         5	    36	  96.7	    30	GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	                              	       

# Left flank :   GACTTGGCGGATCTCGTTGTGCTTATTGCGG
# Right flank :  ACCTCACCCCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCATTGTCAAAAGCAAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCAAGTTGGTACATTTGTATCGCAAAGTCGGTTTTCAGCAGCTACCAGATCGGGAAACGACGATTAATGAGCAT

# Questionable array : NO	 Score: 5.90
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.50,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [23.3-58.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.27   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//


Array 1 29-196 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JTIX01000239.1 Lacticaseibacillus rhamnosus strain Lrh33 CNCM-I-2493_contig00282, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
        29	    36	 100.0	    30	....................................	CAAAAATGTCAATGTGTCGATGACCTGGCT	
        95	    36	 100.0	    30	....................................	TTTGGCTACAAGCATGACCCAACGGCAGGG	
       161	    36	  97.2	     0	........C...........................	|                             	
==========	======	======	======	====================================	==============================	==================
         3	    36	  99.1	    30	GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	                              	       

# Left flank :   TGTCTCGCAAAATCCCGGCGTGGGCTGAG
# Right flank :  GTGTCCAACTTAATATCTGACCACTTAATA

# Questionable array : NO	 Score: 5.31
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.50,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [18.3-33.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.27   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//