Array 1 39579-38268 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFZK01000013.1 Escherichia coli strain KS-NP112 sequence13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39578 29 100.0 32 ............................. GCAAAACCCTCGACTGGACAAATACCGGCGCG 39517 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 39456 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 39395 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 39334 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 39273 29 100.0 32 ............................. TTCCAGCATTTACGCGGGGGTGTGCGAATGAT 39212 29 100.0 32 ............................. CCGGTCGCGCTATTGAGCCGTTCTTTTCACAG 39151 29 100.0 32 ............................. ACCATAAACATTATCCCCCGGCAAATTACCGC 39090 29 100.0 32 ............................. TCGATGCCGAACACGCTAAATATCTCGCAAGT 39029 29 100.0 32 ............................. GTGCGTTGTTGACGGTCTGACCTTCCCGCTCC 38968 29 100.0 33 ............................. GCCTGATTCCCGTATTTGTGAGAGTAATAACGC 38906 29 100.0 32 ............................. CTATTCCCCTGACCGGACATACCCTGGACAAT 38845 29 100.0 32 ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 38784 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 38723 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 38662 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 38601 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 38540 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 38479 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 38418 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 38357 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 38296 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 65922-65282 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFZK01000013.1 Escherichia coli strain KS-NP112 sequence13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65921 29 96.6 33 .........A................... GGACCGACCAGTGGCGGCGGGGTAAATAAATGA 65859 29 100.0 32 ............................. TCTTTCTGCTCTATCCCTGAAGAGCGTACGTC 65798 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 65737 29 100.0 32 ............................. TAAAAATTAGGCTTCCACGCCTCAACGCCAGT 65676 29 100.0 32 ............................. CCCTCCAGGCTATCGCAGCACTGGTCCCGTTT 65615 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 65554 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 65493 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 65432 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 65371 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 65310 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //