Array 1 174206-175403 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJGZ01000100.1 Streptomyces nanshensis strain SCSIO M10372 scaffold55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 174206 29 93.1 32 ......TT..................... GCCTTGGCCGACGCCCGCCACAACCTGGTGCG 174267 29 93.1 32 ......TT..................... GTTCCCGAGGAAATCTTGTGGATGCGGGCTGG 174328 29 100.0 32 ............................. GATCGCCGGAAGCTCCGGTCGGGCGGTGACTT 174389 29 96.6 42 ..........T.................. CCGACCGCAACCTCGAAGATGCCGACGGCGGCCGCCGCCTGG 174460 29 100.0 32 ............................. CGCCCATGACGGCGCTGCCCGGCCAAGAGGTA 174521 29 100.0 32 ............................. GACGACAGCGCGGGGACCCGCTGCACGTGGTG 174582 29 96.6 32 .....................G....... GCGTCCCACTCGTACGCGTTGGCCCCGTGGGG 174643 29 93.1 32 .............GT.............. ATCCAGGCGACGGTGCGGTAGTGCCAGTGCGG 174704 29 100.0 32 ............................. GACCTGGAGCCCGTCGACATCGACTGCAGATC 174765 29 100.0 32 ............................. GAACCGAACGAGGTCTACTCGGCGGACCAGGG 174826 29 100.0 32 ............................. GCGAGGATGGACAGGCCCTCGACGTCGAGGAG 174887 29 100.0 32 ............................. GACGACAGCGCGGGGACCCGCTGCACGTGGTG 174948 29 96.6 32 .....................G....... GCGTCCCACTCGTACGCGTTGGCCCCGTGGGG 175009 29 93.1 32 .............GT.............. ATCCAGGCGACGGTGCGGTAGTGCCAGTGCGG 175070 29 100.0 32 ............................. GACCTGGAGCCCGTCGACATCGACTGCAGATC 175131 29 100.0 32 ............................. GAACCGAACGAGGTCTACTCGGCGGACCAGGG 175192 29 100.0 32 ............................. GCGAGGATGGACAGGCCCTCGACGTCGAGGAG 175253 29 100.0 32 ............................. GACGACAGCGCGGGGACCCGCTGCACGTGGTG 175314 29 96.6 32 .....................G....... GAGGGTGACTGGTGGACGGGGAAGACCGGAGG 175375 28 82.8 0 ...........A.G.......G.-.C... | A [175402] ========== ====== ====== ====== ============================= ========================================== ================== 20 29 97.1 33 GTGGTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GACCACCGCGCTCACGGCAGGCCTCCCGGCCGAGATCAACTCCCCCGTCGGCTTCCTCCGCCGCCGCCTGACCACCAAGCTCCCACCGAACCTGCCCCCAGAGACCACCCACCCCACCCCGGCCACTCCACCCGGCCGCGTCCTGGTGGAATGCACGGAGTGCGGCACACCGGGCCCCTCCGAGGCCCTTCCTGACGGCCTCTGCCGCCCCTGCCGCGAAACCTGCGCCACCGGGCCCGGCGACCCGTCACCCGCCGTGCCCGCACCACCGGACATCAAGACCCACATGGCCAACCTCCGCAACCTCCTCAAGCCCGTCTGAACCGGACGGCCGCCGACTCAGGGGAACGGGTGTCGGCCTTGGCGGCCGAGGGGCAGAATCGCCTCTGGCAGGGCGAGCAGCCGACCCAACGGCGATCAACACGGTGGGGGATATGTCCGTTTCTCAAGAAGTAAGTAAAAACAGCACCTCGGCCGGATAAACCCGCAGGTCACGAACT # Right flank : CTCAACGAAGCTGGGCTCCTGCCGGTCGCGGCCCTCGGCGGATGGCTGCCGCCGGAGAGTGTCCGGCTGATCATGACGGCCCGCGGAGGGTCGGGCCGTAGCTACCTGGCCACCAGCCGTGACGGTGCGGATACGGCGTCCCGTATCATCCCGCCATGATCATGCTATCTGTTGACCCCGTCTCGCGGAGCTACGCCGATGGCCAGGCAGTGGGGCAGCTTCTGGGTCTCGCCGTCCTTCTGGTCGTTGTCTGGGTCGCCACCCGAGCCTGGCGCCGAGGTCCGGCCCCGGATGGTCCGGACGATGTCGAGCGGACCACCGCCATTGCCGTACGGCGTGGCAACATCGTCCGTGGAGCACTGCTGTTCATAGCCGCCGCCGGGCTGATAGGGGTCTTCACCGGCAAGGGGTACCAGCCTGCCGCGGAGGCGGCCCCCAGCGCCCAAGAGCCTGTCGCCCAGTCTCCTTCCGCCACAACGGGGCCCGCGGCCATCAAGCGC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 103984-104195 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJGZ01000104.1 Streptomyces nanshensis strain SCSIO M10372 scaffold57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 103984 29 96.6 32 ........T.................... GCTCCTGTGGGGGTGCGCAGGTGGGCGGGGGC 104045 29 100.0 32 ............................. CACGTCCACTACGTCAGCGAGGGACAGAGCCT 104106 29 100.0 32 ............................. GTTGGACGGTTTCCCTCGTTGGTACCGCCGGC 104167 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGGTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : CACCGAAGGACGCCTTCGACCGCGCCCTGCACATGGCGGACCTCTTCGCGGACTCGAAGCAGGACTTCCCGGGGGCCGCCAGGATCATCGACCGGGTACTGAACCTGAAGGACGAACAGCCGACTCCGGTGCAGCGGTTGCAGCTGCTGGTGTTGCGTGGGGACCTCGCGCAACGACTGGGGGACGCGGAGGGGGCTCGGGGGTGGCTGGAGACTGCGGAAGCGGTTCAACTCACGGCCGAGGAGGAGGCCTTGGCCCGCGATGCGCTGGCTCGGCTGGAGGAGCTACGGGGGTGATGGAGCAACCGGTCGGCTTCTGAGGGCTGCCCCTCCAGGCTCGGCGGGGGTGCCCCCTTACGACTCCCTGCCGAACCACCCGCCGTGTGGACGGCTCACGAACCGACTACGCTCGGCCGCCCCCTCTGTGATCATGTAGAGGTGAGCATGCAGCCCAAGAGTCAAGGACTGGCAAAGCCCCTATAAACCAGCAGGTCAGGAAGT # Right flank : GGCGCTGATGGTCCTACCGGCGGCGTCAGCCGAACCTGCACCCGAGTGGGTACTGACCCGCCGCCAGCATTGGGCGACCGAATCCGCACGGCACGCACCGCCCTGAAGATGTCGCAGGAGCGCCTGTGCGAACTCAGCGGAGTGGACCAGCAGACGATCAATCGCATCGAGCTGGGCCGTCACGCCACCCGCATCGACACTCTGTACCGCATCGCCCGGACACTGAGGGTCCCCCTGTCCGACCTCGTACGCGAGTAGGGCATGGCCGCGCGCACGGCCATGCCCCCCCCTCTGTGGGCTATGCCCTTCTGGGCTGGATGATCGCCGTCGGGTCGCGGAGCCAGATGTGCTGGCCGCGGTCGGTCACGGTCATGCCGAACTGCTCGGCGTCCGGCAGGCCGGCCGACTCGTACACCTGCCAGGCCTGTTCGATCTCCTCCCACAGGAGACCGGGCCCGTACTGCCATGCCTCCTCGCCGGTGGCGGCGGTGGCCGCGGCT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 109043-109254 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJGZ01000104.1 Streptomyces nanshensis strain SCSIO M10372 scaffold57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109043 29 96.6 32 ...............A............. TGCGCCCCGCTGGTGTGGGTGGTGCGGGAGCA 109104 29 100.0 32 ............................. ACCAACTCGCAGTGGACGCAGTACGCCACGAA 109165 29 100.0 32 ............................. TCGAGAGCGATCAGTGGGGCCTGCTTGCGGGC 109226 28 75.9 0 A............A...A.AA.-A..... | C [109230] ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 GTGGTCCCCGCGCGAGCGGGGCTGTTCCG # Left flank : CTTGGGCGCCCAGGAGGAGGATTCCAGAAGCCAGTTCACCGATCGCCTGTGGTGAACCAGCATCCGGGGGCCCGCCGTACCGACCCGTCCTGTCTCCGGGCGCGGCGGGGAAATCGGGCGCTTCGGCGGAGGCGGGGTCTTCGGCGGATGGTCCGGGGCGTGATCCGACACATTGGCTCCAGGGGCGGCGGGGCGCCCATCGTATGGCCGCTCATCGCGGCCCCTGCCCCCGATGAGCCGCCCCTTCACCCGTACAGATGGGACTCCCCGTACAACTTGACGCGATTTTGCGCCAGGTTCCAGCAGGCGGGAGAGGGGGCGCGGGAGAGGTGGGCGCTTGCCTGCACAGCACCTTGCGGTACGCCGACGCGAGCCACTGTTCCGTGCAGCAAGACGTTTGCCGTTGCTGATGGTTGGGGCTCTGCCACCATGCCAGGGCGAGGGCCGCAACCATGAGTCAAGAATCGGCAAAGCCCCTATAAACCAGCAGATCAGGAAGA # Right flank : GCTCAGCGCGTATACCGATCCCACCGCCAACTAGCAACATCATCAACACGATCCCCGCAAACCCCACACGTAACAGACACCTGCACGACATGATGATCTCTCACGAACCGCACCCAGGGGGTCACCATGCGCCGTACGATCATCGCCGCCACAGCCGCGGCCGGGCTGCTGCTCACTGCGACGGCCTGTACCGATGACGAGATCACCACCGCACCCAGCAAAACCGGCGCTGCCGAGGAGTCCAAGAAGGCCGAACCCACCGAGCCAGCCGCCGAGGAAGAGGCCGAGAAGCCGTCCAAGGACGCGAAGGTCGGTGACACCATCGCCCTCAAGGGGAACGAGGGGGAGAAGGTCGACGCCGTCCTGAAGAAGTGGGTCGACGACGCCAAGTCCGCCGATGAGTTCTTCAAGCCGGCCGACGGGAAGCGCTGGGTGGCCGCCCAGTTCGAGCTCACCAACACCGGCGAGAAGCCGTACGTCGACAGCCCCTCGAACGGGGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGAGCGGGGCTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.90,-12.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 70912-71062 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJGZ01000009.1 Streptomyces nanshensis strain SCSIO M10372 scaffold18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 70912 29 100.0 32 ............................. GACGTCACCCGCAGCCGGGTCGGCGGATCCTC 70973 29 100.0 32 ............................. GCCTCGGTGCCGTCCTTCGCCAGCCCGTTCTT 71034 29 96.6 0 .........................T... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGGTCCCCGCGCGTGCGGGGGTGGCCCC # Left flank : CCTCCCGCGCGGGCGCTTCGCCGAGCCACTGCTCAAGCCGCCCCTCCTCCTCCAGCAGATCCAACTGGTCCTCGTCCAGCAGATCGACAAGCTCCCGATCGGAGGCCTCGCTTTTCATGTACCGCTCGTCGTACCGCTCCAGAAAGCGACGCCACTCCTCGGGCGTGGTCAGAACGTCAGTAACTTCACTGCCTTCAGGCTTGGTTGTCTCATCCATGCGGCCCATGCTCACAGGCCCCTATGACAACGCCCTCAGCCTCCGGGCCGGCGGACCGGCGGACCGGCGGACCGGCGCCCAGTACGACCACCGGCCGAGAGAGCCACGCCAACTGGACGCCGCTGGCGCTCCTGTGCCACGCGCAGCACTGAGGACAGGCAGAATCACTCCTGGCGTATTCGGCTCAAGCCGGGCCCCTTCCCGAGACCGGAGGGATATGTCCGTTTCTCAAGAAGTAAGCAAAAACAGCCCCTCAGCCATATAAACCCGCAGGTCACGAACT # Right flank : CCCGGAGTTGCCGGCGGACGGCGAGGACGACGGGTGGTCCCCGCGCCGCTTACAGCCTGCCACCTGGCTCTCCGTGGTCCCCGCGCCTGTCGGGGACAGGGTGACGGTCATCGACACCGCCCAGCGGCCAGGCAAAGGGCTCAACGCAGACGTCGGCCCTCGGTCAGCCGGTCTTCACGGGTCTCCTGGAGCCAGATCAGGTCAGCGAGGACGGGGTCCTCGGCAGGGCCAGAGCCCCGCTCGGCAGGCTCCGTCTACTCACCGTCGGTGGTGTCACTCACCGGCGGGCCACCCGCCACGCCTGCTTGAGTCGGGCAGCCACCGGGCAAAGGCCCTCAGCCGCCCGACAGGCGGAGCAGGCCGCAGTGTGCCCGAGGAACGTGCGGTAGGCGCTGTTCGGCTGAGCGCCCTCGGCCACCATCGCCTTCAACGTACCGATCACTGCACCGATTCCAGGCACCCGGGGCACTCGCAAGCAGGAAATCGCTGCGTATCCTCGG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83459-84036 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJGZ01000009.1 Streptomyces nanshensis strain SCSIO M10372 scaffold18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83459 29 100.0 32 ............................. GGGTGGCAGATCGTCGCCGGGTCGGCCGCCGG 83520 29 100.0 32 ............................. GTGACCGTGATGACGGTGCCCGGGTGGGGGCC 83581 29 100.0 32 ............................. GGCGAATCGTGCGGGTCCTCGATGGGCAGCGG 83642 29 100.0 32 ............................. ATCGACGGGTCGCCGTACTCGCGGCGTTCCCG 83703 29 100.0 32 ............................. GGGACCATGCTGCCGGTGGGGCCGTCGACCTG G [83725] 83765 29 100.0 32 ............................. ATCCGCGAGTACAACCACCGCACCATCAACGG 83826 29 100.0 32 ............................. GACACCATGCCGGTCGTCACCAAGTCCATGGG 83887 29 100.0 32 ............................. GGCACGAGCATGGTGGGCGCGGCCTGCTTGTT 83948 29 100.0 32 ............................. AGCGGCCGGATGATCCCGTGTTCCTGCCACGG 84009 28 86.2 0 A.............C.-.......T.... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.6 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GCCGGATGAAGAAATCGCCTTGCGACTCGTCGAGTTGCCGGGCTGGGAGCGTGATGGGGACACGATCACCCGCACGTTCGCGATCCGCTACCACGGTGGCGTAGCCATGATCGTGAACGTCGCGGACGTCCAGCGCCTCATCGGCCACCACGCGGACATCGACCTGCGCTGGGACCACGTACGGTTCCGCATCACGACACACGACGCCGGACACCGTCTCACCACCGCCGACTTCGACCTGGCCGCCCGGATCGACCGCATCGCTACGGCACACGAGGCACAGCCGCACAACTCTTGATCAGGGCGCCCGGGTTGCAACCGCAGCGTTTGGTAAACGGCCTTTCGGCGGTGGAGATGCGGCACTGTGGGGGTGCAGCCGAGTAAGGAGCCCGTTCGCTGTGTTCACTCTTGGACCACCTACGACAAGGGGAGATATGTCCGTTCCTCTGGAAGTGAGTAAAAACAGCCCCTCGGCGACATAAACCTGCAGGTCACGAACT # Right flank : CACCTGGACGTACGCCGTGACGCTGCTCGGCGGGTGGTCCCCGTGTACGCGGGGGATCCCCGCCTTGCCCGTCTCTTGGGTCCCGAGCCTCGGGCTTCGAGGGCCGGTCCGTTCACTCTTTCTCGTGTACGGGTACGGGCGTGGCCCGGAGCTTGGGCTCCGAGACCCGGGCGTCGGGACACGAGGCCCGGGATTCGAGCGCCTTCTTTAACCGGTAGGTAAGAGAGGGGGTTTGGGAAAACCTCCCACCCACCCCACCCAGGCCACTACTGCGGAAGTATGACTATTGGTGACGGCTTGCGGCGGAGTGTCACGAGTGCTTACGGTTCGAGAACTGAACGACCCCGACAGGTGTTAGAGCACCAGGCCGGGGTCTAACCGCAAGATCGCACACCCAAAAGGACGATCCATTGGCTACCCAGCACATTAGCTCTGCCCTGCAACCTCCCGCACTTTCCGACGCGTACCCCATGGCGAATCCGGGCTACGGAAAGCGCTCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 85710-86769 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJGZ01000009.1 Streptomyces nanshensis strain SCSIO M10372 scaffold18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 85710 29 96.6 32 .C........................... CGGGCCCCCCTCCAGAGAAGTTGGAGGGGGGC 85771 29 96.6 32 .C........................... CAGGCCACCCACCTCTTCATGTACCGCACGAC 85832 29 96.6 32 .C........................... CTGCCGACGGTGGACGAACGCCCAGCGGATCC 85893 29 96.6 32 .C........................... CTCCCAGCCGCCGACATCGCCGAAGCCCACCG 85954 29 96.6 32 .C........................... CGGCTCTCCGCACCCACCGATCCGATCGGACT 86015 29 96.6 32 .C........................... GACCTTCCGGACTGCTGCGCACCGGGTGCCGG 86076 29 96.6 32 .C........................... TCAGCGCCGAGCAGCACGCCGCGTTCCAGTGG 86137 29 100.0 32 ............................. GCGCTGGGGTGTGTCGACCCAGAAGTCGATCA 86198 29 96.6 29 ............................T GACCGCGAGCGTGGTGACCGACGCGGCCG 86256 29 100.0 32 ............................. AGGCTGGTGTTGCGGCGGCCGGTCCAGGAGTC 86317 29 100.0 32 ............................. GCCAGGGCACCACGGGTCCGTCCCTTCGCCTT 86378 29 100.0 32 ............................. GACAATTGGGATCCGGCGTGGCGCCGCCAGGA 86439 29 100.0 32 ............................. GCCCCAGAGAACGCTGCGACGACGAGGTCGCA 86500 29 100.0 32 ............................. TGCACGAGGAGGGCTGGTACACGGTCCACCTG 86561 29 89.7 32 ....C.............A......C... GCGGCGAAGGGCTACCTCAAGGGGCTCGACTC 86622 29 100.0 32 ............................. GTCTGGAAGACGTACCCGATCTACGACTGGCG 86683 27 93.1 32 .............--.............. GGGTCGTAGCCGACGCGGACGGTCTTGTCCGG 86742 28 93.1 0 .................-......A.... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 97.2 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CCTCACCGCAGGCCTCCCCGCCGAGATCAACTCCCCCATCGGCTTCCTCCGCCGCCGCCTGACCACCAAGCTCCCCCCGAACCTGCCCCCACAGACCACCCGCCCCACCCCGACCACTCCCGCCACCCGCGTCCTGGTCGAATGCACGGAATGCGGCACCCCCGGCCCACCCGAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCCAAACCCGCGACACCACCCCCGGGAACCCGCCACCCACCCTGACCACACCCCCCGACATCAAGGCCCACATGGCCAACCTCCGCAACCTCCTCAAGCCCGTCTGAACCGGACGCTCACCGTGCTGCTTGACCTCAGGGCAACGAGGGACGGTCTCGGCAGCCGAGAGGCAGAATTGCCTTTGGCAGACGAGCAGCCGACCAGCGACGGCCCGTACGGCGGGGAGAAATGTCCGTTTCTCAAGAAGTAAGTAAAAACAGCACCCCGGCCGGATAAACCCGCAGGTCACGAACT # Right flank : CAATGGCCAGCTGACCATAGTCGGGGCCAGTTCGTGGTCCCCGCCCACGCCGGGCTATCGGCCCACCAGCCCCCTCACACCCCCAACTCCCCCCGCGAATCCGCAACCGCCTCCGGATACGCGGCCAGCAGCCGACGGGCCACCGGCAGTGGCATCCGCACCACCACCGGCTGCGGCAGCGTCAGTTCGCGTTCGGCCACTGCCGTGCGGGAGGAGCGCACCCGGTCCGTCACCCGGGCCACCACCCGTACGTCCAGCGTGAATTGGACCAGCACCGACGCGAACTTCGGCTTGTGCAGGGGCATCGAGCCTGCACCGCTCGCCGATGCGCCCGTGGCGGAGCCCGAGCCGCCCCCGTTGGCCATCAGTTGGTTGAGGCGGAACTCGTCGGCGTTGAGGACTCCGGCGCCCAGGAGGCCGCGGGCCTGGCGGCTCTTTTCGGCTGCGGACTGGGCGTCGGTCTGGGTGGGGCGGGGGGCGGTCAGGTCGCTCTGGGCCAC # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 38366-38154 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJGZ01000004.1 Streptomyces nanshensis strain SCSIO M10372 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38365 29 100.0 32 ............................. ATGCCCGTGCTCAGCCTGCCCGTGCTGCCTGC 38304 29 100.0 32 ............................. TCCAACTACTCGTCCATCGCCCAGAAATACAA 38243 29 100.0 32 ............................. AGGGTGACGGTCATGGGCGCCGCCCGGGGGGT 38182 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : CGGCGGCCATCGACTCCCCCGTGGGCTTCCTCCGCCACCGCCTGACGACCAAGACACCACCTCAACTCCCCACAGAGAAAACCGGATCGGGCACCACCGCCCCCGCCGCCCACAGCCTCCTCGTCGAATGCACGGAGTGCGGCACCCCGGGACCCCCCGAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCGAAACCCACAGCAAAGGGCCCGGGGACCCTTCGCCCGCGCCCGCCGCAGCACCGGACATCAAGGCCCGCATGGCGAACCTCCGGGACCTCCTCAGAAGCGTCTGAGAAGGGCGACGGCGGATCAGCATCGATTGGGCAGCCTCTTATCCGGGAACGAGCCGCCAGCCTCGGCCAACAGGGGCAGAATCTCCCCAGGCAGGCCCCGAGTCCGGAAACGGCCGTCTGCACGGCGAGGGAGATATGTCCATTTCTCAAGAAGTAAGTAAAAACGAGCCTCACGCCGCATAAAACCGCAGGTCACGAACT # Right flank : GCGAGACCGGTCAGCGCGGCGGAGTTCGTGGTGTGGTCCCCGCACGCGGGGACGTATCCGCCTCCGTGGTCGATCCCCCACCGGGCAGTCGGCGCACAGAAACCCTGCTTGCCCGGGCAGTCCGCGAGGTCCGCTGAGTCCGGGCTACAGCGCCTCGCCGGGAATCGACAGATAGGCCTCGCGGAGGCGGCCCAGCAGCGGGTGTTCGGCGGCGAACCCGGTCCCGTCGATCGCCGCCAGGGGGCGTACGCCGATGCCCGCGTTCGTCGCGAAGGCGGCCGCCATCACGTGGGCGTCCTCCAACGTCAGGTCCGCGTCGCGATGTTCGGCGGGCGGTGTCGGGTGCTCGCGCAGCAGGGCCGTCGTCACGCCGGGCAGTACGCCGGATCGAGGCCACAGCACGGTGCCGTCCCGGTCGATGAAGCCCACGTTCCAGGTGGCGCCCTCGGTCACGTGCCCGTCGCGGCCGACAAACAGGGCGTCGTCGTACCCGGCGAGCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //