Array 1 237711-237211 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVOA01000109.1 Lactiplantibacillus pentosus strain IG3 NODE_312_length_341658_cov_81.367424, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 237710 36 100.0 30 .................................... GTCACGACTATGACAACGAAAGACACGCTG 237644 36 100.0 30 .................................... TGATCTATAACCGTTACCAGAGTAGTCAGG 237578 36 100.0 30 .................................... AGGCCTATTCTGCATACATTGACCGATTCA 237512 36 100.0 30 .................................... TCTGGCTTGATCTCATAGTCAAAGTTGCAG 237446 36 97.2 30 ..................................T. AATGCGGTCAGTTTGTTGCCGGAGGTAGTA 237380 36 100.0 30 .................................... TACCAGACAAAAAGCTACAGCAGATTATGA 237314 36 97.2 30 .............................T...... GTGCACGTGGGTCGTCGTCTGCGAACGGCC 237248 36 80.6 0 ................GG.........AC....GTT | AC [237222] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 96.9 30 GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Left flank : TCGAACCATTGAAGTTAATCAATATTTGACTAAGTTGGAACGACTGATTAGTGAGTCGTTAGCCGATGAAGATCGTAATCAGATTCATGATAGTTTGAGTAACTTATATTCAACTGTTCAACAACAACTTTTCTTAACGGACCTACCACTGGAGGTAACTTACGATTTCGATATGAAGCACTTATTGAAATTTGCAAAAATTCATTTCGATGAGAAGTGGCAGACTAATCCTTATGATATAATTGAGTCAGTCCTGAAGGTTCATCAAGAGTGCGGTATTGAATCATGCGTGGTGTTGACCAACGTTGCGCACTATTTGACCGTCTCAGAAATGCAAGAACTTAAAAATAGCGTGGCAATGACCGGACAATCATTGTTACTGCTGGAGTTCTGCGTGATGAATCAACGTGATTATTATGATGTTGGGACATTTAATTATATTGATGAGGACTTTGTTGATTGGTACTGATGAAATGTTAGATTTCGATTAGAAATTAACG # Right flank : AGTCTGCCACGTATGTTGTTACCATCGTTTAAAATATCATTATAGGTCGTTAACTATGTGAGGATTCTGATTTGTCGTAGTCAATTTAAAAAGAATCTGTATTTTGAGAATGAGAGCTCAGCTGTCATACTAAACATGCGAGCTTTTTACCACCGTCCACTAATCCACAATAATCTCCCGCACCCCACAAAACACAACATCCTGCCGATCACCAAACTGCCGCATGACCTCGCCGTGTGTCACGCAAGCGATACAATCATATGTTTGAGCGTACTTGCTCAGAGTTGTGAGCACTCGCGACTTAACTTCAGCGGCTGTCTCATAGTGCAGAGGACTGTCTGCAACTCGTTGGCCGGCATGTTGTCGATAAAGCTGATAGGCCACGCTGGCTTGTTCGTCAGTGTCAGTGCGTGAACCAGTGTTATCAGGTTGCCACTCGCGCAATCCGAGCTTAACTTTTAAAGGAATGTCGTTAAACCGCACGATTTCTAGTGCCGTCT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 107348-107010 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVOA01000082.1 Lactiplantibacillus pentosus strain IG3 NODE_118_length_627723_cov_53.320969, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 107347 29 96.6 32 ............................C TTCTGGGCGGCGCTCGGAGTAGAGGCTGTCTG 107286 29 100.0 32 ............................. CAACAATTTGGAGAAAATTCAAAGCTGGAAAG 107225 29 100.0 32 ............................. ACAGTCGCCGTTAAAACTAGTCTGCCTAATGG GT [107214] 107162 29 100.0 33 ............................. ATTTCGAAGGCTAAGGGCGGTGGCTACGATTTT 107100 29 100.0 32 ............................. TCTGAATGCTCTGCTCGGTTTAGATAAATTTT 107039 29 82.8 0 ..T..T.....A..A.....A........ | T [107013] ========== ====== ====== ====== ============================= ================================= ================== 6 29 96.6 32 CTATTCCCCGTGTATACGGGGGTGATCCT # Left flank : ATTGTAGCAAGAACCCCGAAACCTCAGCTCAAAAAAATCATCCTCATACATCGAGAGAATGATTTTTTCAACGACGATGTTAATTGGGGGCCAGATGCCCCAATCCCTCTTCAAAAATCACCAAAGGAACGTCTGCCCAGGAATAGACATTCCCAAAGTTACTATTCCATCATACTTTCGGAATCACTACACCTTTGCTGGACTGCATTCACTTCAAGTTACACCGCCCAGACACTACAGCCTACCTTAACGAACAACATTATATGGTTGATTAGATGCTATTATTATTTTGCGGCATATGACATCTCACGTGGCGATTATCAAATTTACTATCTAGACACGCCATTTTTCACTCTGTACTTTTACTACTGCGTCCTGATGGTAAACTATTGATTTTATTTGGATCATACCTTATAGTCAAAGCACTAGCCATTTGACAAGTTGACCCTAAACAGTCATTTTCATATTTTAGATTGTTGATTTACCGGCATTTGTTTAGT # Right flank : AAACTCAATGGTTCCTCAACGACTGCCACGTTCTCCGCACATGTAGTATTCCACCCGATCCAGTGCCATTGTTCAATACCAAATATTTTGTTCAAAAAAAGACCGCCACCCCACAGGATGACGGTCTTTCAACATTAGAGCAACGCCCTAATTAAGTTTTAAATTAAGCAAGTGCCTTTTTAGCAGTGTCAACTAATGCCTTGAATGCATCCGCATCGTTAACGGCTAAGTCAGCTAACATTTTACGGTTAACGTCAACGTTAGCAACCTTTAAACCGTGCATTAATTGGCTGTAGCTGATGTCGTTGATCCGGGCTGCGGCGTTGATCCGGGCAATCCAAAGACGACGGAAGTCACTCTTACGCCGGCGACGATCGCGGAAAGCGTATTGGTATGACTTCATTACTTGGTCCTTAGCAACCTTAAATTGGATGTGCTTAGCACCACGGTAACCTTTAGCTAATTTTAAAATCCGTTTGCGACGTTTGCGTGTTACAGTT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATACGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 117301-117696 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVOA01000082.1 Lactiplantibacillus pentosus strain IG3 NODE_118_length_627723_cov_53.320969, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 117301 29 100.0 32 ............................. ATAAATCGAACTAGTATTAACTTTTGTAACAT 117362 29 100.0 32 ............................. GCGAGTGAATGATGTGAAATTTTTGGGGAACT 117423 29 100.0 33 ............................. CACGGCGTCCGACCTCATTATTGGCTAATTTCA 117485 29 93.1 32 ...C........................T AACTGGTGGACTGACAAATACAAGCTATAAAA 117546 29 96.6 32 .......................A..... ACTAGCTGCCTTAAAGACTACGTTGACTTGGT 117607 29 79.3 32 ...C......C....G..A.A.......T GTTTTACGCCCAAGGAAGTGATGAATCGGTTT 117668 29 69.0 0 .........AC.C..G.AAT.A......A | ========== ====== ====== ====== ============================= ================================= ================== 7 29 91.1 32 GTATTCCCCGTGTATACGGGGGTGATCCC # Left flank : GCTTTCGACTTACTGCCAACCCCACCCATTCAATTATCGATCCTGAGCATCCAAAGGGACGGGTTGTGCCACATGTGACCATTGAACAACAGAAAAAATGGCTAGAAGACCGTGCGACTCGAGCTGGATTTGAGTTGATTCGTCGTAGCAATGTAGAATCTGATACAATTCACAAGTTAGCATTCGATGTTGTAAGCCATGATTGGCCAGTGCTTCACCACCATACAGAAAATAGTGTTCGCATGAGCCGTGTTACGTTTGAAGGACTCTTACGCGTCAAAGACGTAACGGCCCTCAAGCGAACCTTGACGATGGGGATTGGCCGTGAAAGAGCATTTGGTATGGGCTTAATGACGGTTATTCCTGAAGCATAATGATTAGGATAGGCTCGAGTTGGTGAGTCGTGGGTACGATATGATGCTGACTGTGTTAGAAACCAAGTTAACTAAAAACTGCCACGTGGTGTTTTCAGAAAGGCTTAGAGACGGGATTTATTAAGT # Right flank : AATAATACCGTATCCCACACTGATGAGGCCACACATCATAACTGAGGCCGATTTTCACATTTATCACAGCCTAAAAAGCGAGCCCCCAACCAAGGGACTCGCTTTTCTATCACTCATAATACTATTCCGTATGATGTTTCCGAACCGGGCTGACCCAAGTTCCGCTACCGTAACCAAGAATCGTTTTAACGGCTGGGATCAGTGTTGTAACGAGGGCGAGTGCGTTGACTTGCCAGTAGATCAGCATGTATAGCGGCATGAAAATCAAGTATTTGAATTTACGACCGCGGTCATCGACAATCAGGGCTGACAGTAGCTGCAAGACACCAGCAAACATCTCGAAGGTGACGAAGATGAAGGCCATGCAGAACATGTGGTAAACCCGTTCGTAGTTGCCCGTAAAGAAGAAGGTGACCAGTGAAATTAAGAAAATCAGTGTTGAGACAAAGAAGAATAGGGACCAGATAATACTCAAGGTTTGGTCAGTAATGAAGGCCCAT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGTGTATACGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1854-1337 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVOA01000084.1 Lactiplantibacillus pentosus strain IG3 NODE_120_length_98193_cov_65.878914, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1853 28 100.0 33 ............................ TGGCAGCATCGTTAGTTGCTCCAATCGGTGAAG 1792 28 100.0 33 ............................ TACACGTTCACTCATATAAACTGCCCCTAACCT 1731 28 100.0 33 ............................ CTATCAACACACTTTTACTCAAATGAGCGAGTA 1670 28 96.4 33 ..........C................. TTAATGGTTGCTAGTCCGGTCGCGGACCGCATG 1609 28 100.0 33 ............................ CCTTCATCCAAGCAGCCACTTGACTGGCGGTAG 1548 28 96.4 33 ..........C................. TTACATCCGTTAAATTCATTCTTACTCACTCCA G [1526] 1486 28 89.3 33 .....T....C......A.......... TCAGCTTTGCGGCACATATGCAACATGTTTACG 1425 28 85.7 33 ...............A..A..A.T.... TGACATTTATTTCATTGCACAAGATTCGAGAAT 1364 28 82.1 0 .....T....C..G...A........T. | ========== ====== ====== ====== ============================ ================================= ================== 9 28 94.4 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TCGCCTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACACGAACAGACATTGAATTTTTGGCTAAATTGCCACTGTTTGATGGAAATAACTCAGAATAATATAACTAGTAGTAGTGAACCGCGTCGCAGAAACAGATTTAACGGATGATTTTATAGTCATTTTTGGCTTTATCAGTATTGTATGACCATTTAGACCAGTCAATTATAAATTCGTTTATACGGCAATTTTGGGCCGAATTTGAGCGATTCGTTAAATCTTGAGAAGTAATCATTTTTCAATGGCAATGCTAATTCAACTAAAATAATAATCACTTCATACTTTCATGGATGGTATTTTAGACAATTGACCGTCATCGACTAAGGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTAATGTAAAAACTCAATTTTACGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : TAAGATGGAAAAAGTGCTTCATATCCTATAGTTGTTCCCCGGGCATGGGGGTAATCCCTAAAAGCCCGCGCTATTAACGAAAACATTACCGGCTCTGTTCCGATACTTCATAAAGATTCTATCAACTCCACTTGACGGGGAGCCCGATTACCCCTGGTCGCCTCACCTCTCACAGTCATTCGCAAACTCGGCGCAAGGTAATTTAGAATCCAGAGCAAAAAAACGCCATATCCGAAGATATGACGTTTTTTTAAGTATCGAAAGCTATTCAAGATAGCTTATTGATACCGGCGATCGGGGTCGAACCGATACTCCCTCAACGGGAACTGGATTTTGAGTCCAGCGCGTCTGCCAATTCCGCCACGCCGGCAAAATAAAATGGGTGAAACTTACTGATCAGGATTATAACCTTTTCAGGAAAGGCGGTAACCGGATTTGAACCGGTGATGAAGGTTTTGCAGACCTCTGCCTTACCACTTGGCTATACCGCCATCATTTAT # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : CTGTTCCCCGTGTATGCGGGGGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //