Array 1 259202-256459 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQMA01000001.1 Neisseria lactamica strain M37157 M37157_HUY4067A192_cleaned_ctg_8747, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 259201 32 100.0 34 ................................ AGCTTGTTTTGCTTTTAGTGTTTTTTCATCAGGC 259135 32 100.0 35 ................................ ATCAGGCATAAGCAATCCTTGATTTTTAAAACCGT 259068 32 100.0 33 ................................ TAGAATTTAGTCAAGCCGTTTTTTGAATTTTTT 259003 32 100.0 34 ................................ CTAGAGTGGATTTGGTGTCTTGGGAGAATCAAGT 258937 32 100.0 35 ................................ GGCTCAACCCCCGTATAGTAACACGGGGGTTAGGA 258870 32 100.0 33 ................................ GTGGCGTAAGAACCACACACTAGCGGCAATCAC 258805 32 100.0 34 ................................ GACTCGGAATGGATGAGGCCAACCATACGGAGGC 258739 32 100.0 34 ................................ ATTCAGTATTAAATCGGTACACCGCCTGTACCAT 258673 32 100.0 35 ................................ AAGGGTGTTCCTTGATTTGAATAGCATGTGCAATC 258606 32 100.0 34 ................................ TCGAACGCTATTCATTCTTGTCCAAAGCCCTCGA 258540 32 100.0 34 ................................ TTAACCACGCGTCCGCCCTAACGGGCATTAAGAA 258474 32 100.0 34 ................................ CATGTATGCCATTACACCCACACCACATGAAACT 258408 32 100.0 34 ................................ CCGAAATCACGGGCAACCGCCTACCGCTGGCCGT 258342 32 100.0 33 ................................ CAAGTAAAGGGCGTAGCAACTAAAGCCTAAGAA 258277 32 100.0 33 ................................ AAGTAATCCCGCGTCCCGATTTAACCCCCGGAA 258212 32 100.0 34 ................................ TTGGTACAAATGTGTAACGTCGTTGGATAATCCG 258146 32 100.0 35 ................................ ATCAAGTCGTTTTGTGCTTTCATCAATTCTTGTGA 258079 32 100.0 34 ................................ TTCCATAAATAAACCAAATGTTTAAATTTAATAC 258013 32 100.0 34 ................................ CTCCATGCTGTCGCCGGTCAGGGTGCAGCAAAAC 257947 32 100.0 35 ................................ AATAATAGAACACGTGCTAACAGGTGCACGCTCTC 257880 32 100.0 34 ................................ GGTAATCCGGTATGTACTACCAAGTCGGAAATAA 257814 32 100.0 34 ................................ CCGTCAAATCCAAAAGACGGATGCGCCTGCCCGC 257748 32 100.0 34 ................................ CCGTCAAATCCAAAAGACGGATGCGCCTGCCCGC 257682 32 100.0 35 ................................ CTTTCAAAAAAGCCACCATATTTCAGGCGGCTTAC 257615 32 100.0 34 ................................ TTTTGCTTTGTCATAAATACGGGAAAATACGGAG 257549 32 100.0 33 ................................ GTCGATTTTGGCGCATCGTATTGCCGCGTTTAA 257484 32 100.0 34 ................................ TCTCAATTGACTTGCCGCTTGTGGATATGCGGTC 257418 32 100.0 35 ................................ CGAAAACGGTATTAAAAACTATGTCTGCTACGGAG 257351 32 100.0 33 ................................ GTTGATGATGTTCACGTTACCGCCGCCTCCGTG 257286 32 100.0 34 ................................ AATTTCGGCAATATCGCCGTTTCTTTCCGTGAAG 257220 32 100.0 34 ................................ CAGATTGGAAGTGCCTTAGGTTATAAAAATCCAT 257154 32 96.9 33 ......A......................... ATTTGCACCCATTGGGAGAACGGAGCGGGCGAC 257089 32 100.0 34 ................................ CAGTGTGTTGCGGGCGCGTTGCCCTTGACGGCTG 257023 32 100.0 33 ................................ CCTTTTAAATCCTAAAAGCCCGCGTTGTCCTTT 256958 32 100.0 33 ................................ ACAAGCGGAATCGCACCGTTATTGCGATATTTT 256893 32 100.0 34 ................................ AAGCTGAACAATCTGTACGTGTTGAGTTTCAGAA 256827 32 100.0 35 ................................ TTTTAATTCTTCCATTTCAAGCTCCTATCTGGTCG 256760 32 100.0 35 ................................ CTGTCCGTGGCGTAAGAACCACTACATAGGCGGCA 256693 32 100.0 39 ................................ AACACGAAATTGCGCGGGCAAATTGGAAGAACATTGTTC 256622 32 100.0 35 ................................ TGAAACTGCGAAGCCAACCCCCCTTACTAACAGGG 256555 32 96.9 33 ........A....................... AAGGCAGAAATTGATTTTGATTTCGTCACCAAC 256490 32 93.8 0 ............G.......A........... | ========== ====== ====== ====== ================================ ======================================= ================== 42 32 99.7 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGGGACAAGAAAATGCTGATGTTGATAACTTATGATATTTCGTTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : GGCGCGGACGACATCCGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCCGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATCGGGAATATCTTTGTTAAAAACGGGTTGATATTATCTGCACAACATATTAATATAACGATAATTATTATTAATTTAAATAGAGAAAAAGTAGAAATGCGTAAACTGAATTATTTCAGCATTGCCTTGCTGCCGTTGATGCTGGCAGCCTGCGGCGGCAATTTCGGCGTGCAGCCTGTTGCCAAACCAACGCCGACCGTACAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCCACTCCACCCCCTGCCAAACCTTCTACAGAAACCACGCCGGTCAATCAACCCGCCGTCGGTGCGGCAATGCGGCTGTTGAGACGGAATACTGCTTTTCATCGTGAAGATGGCACGGAAATTCCCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //