Array 1 133235-131068 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORT01000002.1 Paenibacillus azoreducens strain J34TS1 sequence002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 133234 32 100.0 35 ................................ TTTATCCGGGTCATTGAAGCCCTCATTCCGCGCCC 133167 32 100.0 33 ................................ ACTTGTCCACACATCGCAATAGAAGGTAGCCGC 133102 32 100.0 34 ................................ TAAAGTGTTAGGAGCGACGCGAATGGTAGTGAGC 133036 32 100.0 36 ................................ TTGGACTTTGGTTTTTCGTATTCCGTAAAAAGTAAG 132968 32 100.0 35 ................................ AACTAGCTTACAACAAAATGCGTGTGGCTGTTTTG 132901 32 100.0 36 ................................ TTAATCATCGAAACGTTGCCTTGAAGTGTATCAATA 132833 32 100.0 35 ................................ CAACATGATTATGATAGAGACAAGCAATAAACCGA 132766 32 100.0 34 ................................ ATTCAAGACGCCGTCCCCTCCTTGCTTTCCCTCC 132700 32 100.0 34 ................................ ATCAAATAAATACGGGGAATAAACGTAGAAACAG 132634 32 100.0 35 ................................ ATTATCTGGTCAGACAAATTCCGAAGCTGATCATC 132567 32 100.0 35 ................................ ATTATCTGGTCAGACAAATTCCGAAGCTGATCATC 132500 32 100.0 36 ................................ CGTAAAAAGTAAGGAGGTTTTGTGCTTTGGCGGCAT 132432 32 100.0 35 ................................ AGTAAAGTTGAAATTGAGCAGAGGGTCATATTTTA 132365 32 100.0 36 ................................ TTCCATACAATTTTAACACCGTCCATACTGGCACGG 132297 32 100.0 36 ................................ CTAATATAAGTACACCCGTGTTAGCACTAACCGAGA 132229 32 100.0 35 ................................ TTTAGTTGGTCAAACGTACTTTGATAAGCATTTGT 132162 32 100.0 35 ................................ ATATGAACCTTTGAATCCGAATAGGTTATTTCCTT 132095 32 100.0 35 ................................ TCGTTCCGATTTGAGACGTGCATTTGCTAGATCAA 132028 32 96.9 33 ...............A................ TCTGCCGCCAATCTCGCTACTACCGCATCCTCC 131963 32 100.0 36 ................................ TCTTGCCTCACAGCCGATGAGATGGGAAAAGATGCT 131895 32 100.0 36 ................................ ACCTGTGATGTTCTTACGATATGGCGCCAGCATTTC 131827 32 100.0 36 ................................ CGTATCGACGAATTCTTCTTGCAGGAATGTTAGCTG 131759 32 100.0 36 ................................ ATCGATAAACTTAAGCTCTATGCCAAATTCAGCGGC 131691 32 100.0 33 ................................ CGTATCTGGAAGAGGTGGCGCACTTGGCAAAGG 131626 32 100.0 35 ................................ ACTGTCTCTCCAATTACCATGCACATAGATATAGT 131559 32 100.0 33 ................................ GTAAATAGCCATTTCGCCCCGGAGAATTTCTAC 131494 32 100.0 35 ................................ GTGATTTCGGCATTGATCAGACTGACGTTGATGCT 131427 32 100.0 34 ................................ CTCGTCCCACCAGCCTTTGGATTTAGCGTTTTCG 131361 32 100.0 33 ................................ CTCATATTCGATTCGTGGAGCAGCCCAATAAAG 131296 32 96.9 34 ............G................... CATATTGATGAGATTGAGTTTACCGGAACATTTA 131230 32 96.9 34 ............G................... CGATCATCGATCAAATTTACGATACGCATAAAAT 131164 32 90.6 33 ..C.......T..T.................. GAAAATAAAATACTCGATGCAAGGGAAACGGAA 131099 32 90.6 0 ............G.................GC | ========== ====== ====== ====== ================================ ==================================== ================== 33 32 99.1 35 GTTACTCCCTGCACGGGAGTATGGATTGAAAG # Left flank : GCGCCGAAAAATGGGTACAAAACACCTTACTTAGTAACGGTTTTACGGCCATCATGACTAATTGGAGACAATTGCGAATGACTGGCTGAACACAATAACTGCACGAATCCTGCAATGTTGGGGGAGGGAGCTACTTACTTAACAAAAATGAACGGCAAGAAAGATTGAAATTCAGGAAAAAAATGTGCGGTGGGAGTATAATATTGGGAAAAGGGGATTTTTAGGGGATGTGCTTTGTCGGCTCGTGACTCATGATAGTTTGCTAGTAATAGGCTAAAATGGGATCAGGACAAGAAAATTTTCTTATACTAACTTGTACTAGAATATTCTGGTGCGAACCCCAAGTGCACATGAAATCCCCGGGGGATTCGCACCACCATATTTCATGCGGCTTTTGGCGTTTTTAAGTGGAATTTAAGCAGGAAATATTATGCCCAAATTAGGGATCCGGCAAATCAGGGCTGAGATCCCTTGTACGGCAAGGGCTGAAAAAGCCCGGA # Right flank : CAACACAAAAGCATGATTAGAAAACAAAAGTAGCGGAGGGGACGGAATCGATCTGGAGAAGCGATAGCGTTCGCCTTTGTCTCCGAATTTCTACCATTATGAAAAATATAATCAAAGAAATTTGGGGACAACAGCGATCGGAAGAACGATCCGTAACCGCAGCGTCCACCTAGCACGAAGTTTTTACTTAGGTTTTGCGGGGGTGCGCACATGATAGCTCTGGAGAAACCGCAGCGCTAAAAGAACGATCCGTAACCGCAGCGACCACCTAGCACGAAGTAATTGTTTTACTTAGGTTTTGCGGCGTAAAATTGAGGGGAGTCATGGTTACATATGATTAATTCCCGGATATCCGCACAATGTAACAACTTCGGTTTACATCCCCTACCGCTTCCCTTATGATAGGCATAAGCATGGCGCAAAAATAATATGCATCATCACAGAGAAGGAAGGGAAGAGAGCACACCGATGAGTCATGAGAGTACATTGACCAAACCCCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTCCCTGCACGGGAGTATGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 30801-28842 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORT01000005.1 Paenibacillus azoreducens strain J34TS1 sequence005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================================================================== ================== 30800 32 100.0 33 ................................ GTATCCATTGGCGCACCTGAGACGGTCTATCAT 30735 32 100.0 36 ................................ CATATGATTTTAGTACAATTACTAGAATGTTATTGG 30667 32 100.0 35 ................................ CACTCTTCTTGGTTTGTTTCACAAGCTGGTTACCA 30600 32 100.0 35 ................................ ACCTCCTTCTCCCCCATCGTCCTTTTTAAAAAGTG 30533 32 100.0 35 ................................ GTCGGCATCATCCTGGAGCTTTACGAGTTGATCTT 30466 32 100.0 34 ................................ AACATACGCCGGATCCAGTATATGGAGCGAGGTA 30400 32 100.0 36 ................................ CAAAAAGGGAGAATAATAAATGGAATTTTACATGCC 30332 32 100.0 34 ................................ AACCATTAGTTTCGAATCTTGGTTTGATCAACTT 30266 32 100.0 37 ................................ AAATGTTGCAAACGGCAACCCTGCCGCACGTTTTACG 30197 32 100.0 35 ................................ ACTGATTTGATTTGCAAAATTTGTATTGGTGTCCA 30130 32 100.0 37 ................................ CGATTGAGATAAGTCAAACCCTCCTACGCACGGCCTA 30061 32 100.0 35 ................................ TGGACTGCTCATCTGCCAAAGATGCTGATGAGCTG 29994 32 100.0 33 ................................ ATATCATCCGGTTTAACAACGTCGGTCATTTTC 29929 32 100.0 35 ................................ CCTTTAGGAGCGCCCGGCCCCCGTTTAGTAACGTT 29862 32 100.0 33 ................................ TGAGCAGCTGCTTCGATTGCGGCATTGATCCGC 29797 32 100.0 35 ................................ TCCGCGGGTACTGGAACGCCCTGGCCGTTTTTGTA 29730 32 100.0 33 ................................ GAGACAGCCAGGAATTCGCAGCTGCGGGAAATC 29665 32 100.0 34 ................................ TTGAATGTTATCGTTGGTATTCTCAAACTTTACT 29599 32 100.0 35 ................................ ATATCAGCAGAACAGAGCTAGAAAAAATCAAACGT 29532 32 100.0 33 ................................ CACATCAACACGCAAAGTACCACCAGTACGACC 29467 32 100.0 35 ................................ GTCGTGGTACAATTTACCTCTAGATTCACCGCCTT 29400 32 100.0 34 ................................ TCAAGAAGTTGCTGGAACTGATCCATTTGAAGCA 29334 32 96.9 35 .............C.................. ACCCCTTGCGTTTGGAGACGCGTAGCCACTCGCTC 29267 32 96.9 35 .............C.................. TGATCTCGGGCTCCCTAAAAGTTGGTTAAGGCCTA 29200 32 96.9 37 .............C.................. GTATCGATGCTGATCGGAAATGGAAATGATGTGACTC 29131 32 96.9 90 .............C.................. ATAGTTTGCCTTGGACTGCTCACGTGATGTAATTCCGTCGCATCCTATGCGGAAGCCAACCATCCCGGTAGTACCAAAAATTATGACCAC 29009 32 93.8 35 .............CA................. ATTGGAGATTATTTGTATCTCTTGCAGTAACAACA 28942 32 100.0 37 ................................ TTTTAGATGGAAGCCATCAATGCCTCGACCTGAACCC 28873 32 96.9 0 .............C.................. | ========== ====== ====== ====== ================================ ========================================================================================== ================== 29 32 99.3 37 GTCGCATCCTATGTGGATGCGTGGATTGAAAG # Left flank : GGATGAATACCCTCCATTTTTATGGAAGTAGGTGTTTGATTTGTTAGTTCTAGTCACATATGATGTAAAGACAACAAGCATGACCGGGCAGCAAAGATTGCGCCGAGTTGCAAAGCTATGCCAAAACTACGGCCAAAGAGTTCAAAATTCGGTATTTGAATGCATCGTAGATGCAACTGAGTTTGCTCTTTTAAAAATAAAACTGATGGAAGTTATCGACCAAGAACAGGACAGTATCAGGTTCTATCAGCTTGGCAACAATTACAAAAACAAGGTGGAGCATTTTGGAGTTAAAGAATCCCTGGATCTTGAAGGTCCATTGATTCTATAGTAATTTGACGGTGCGAACCCCAAGTGCACATGCATTTCCCGGGGGATTCGCACCAGAAATATCTTGATATTTATCCATAAATGTTATTTTATGTATATAAGTGTTCGTAAACAAGTATGTTTTCGACAAAAAAGTACTGGTTTTCAGGCTTTTTTACTTGAAAATCGGA # Right flank : TTGTCTGCCCATGATGTGAACTGGATCTTCACTAGGTCACATCCCTCATAGATGCACGGTTTTATGTTCACAACTGCAAAGCTCCCCACTCCGGTCTCATTCTGCACTCGCTGCAGCTTGAGACTTTCTTATGTTCCATACCTCCAAAGAAATCGCAAATGTAAAAATCCTCGGAGTGTTGTAAATATCCTCTATTTCAGTCTAGGGGCTCCCTTTTTATGATGAATATAGATTCTTTGCTTTCTCTGAAAGCGAGGGCGGGGAGTCGGACTATCTTACGAAAAAGGGTTTCGTAAAGCGGAAGGAGTAACAACATGAAGCCGAAAATAGACACACAGCGCTCCATGATTAAACCGAACAGGAGCTTACATGCCAGGCTGGGCAGGCTGGGAAGTTCATCGACGTTTGTTGGCTATTTGTTTGTAGCCCCCATCCTGATTTTGATGGGAATCTGGTTTTATTATCCTCTGATTCAATCGTTTATTTACAGCTTGCAGGAT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 41474-40447 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORT01000005.1 Paenibacillus azoreducens strain J34TS1 sequence005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 41473 32 100.0 33 ................................ CTAAATAACGCGTTTTCTGAAACAGGAGCAAAC 41408 32 100.0 34 ................................ CTCAAACGCGCATTTGATGGCAACTGGAGATTCC 41342 32 100.0 33 ................................ CATCCGCATCTGCTGTAATGCCAAGCAGTGTAA 41277 32 100.0 33 ................................ CATCCGCATCTGCTGTAATGCCAAGCAGTGTAA 41212 32 100.0 35 ................................ TTCAATAACGCATCTTTTTGACCGTCACCAGCAGA 41145 32 100.0 33 ................................ GCATTGAATTTATTTTTTATTCCTGGCCCGCAA 41080 32 100.0 36 ................................ TGATAATAATCAGGATTGCCAGCGTATCCCGTATCG 41012 32 100.0 34 ................................ CTACTCGGGGAATGCCTGCTACTGGACCGACTTG 40946 32 100.0 35 ................................ ATGAATACAAGCAGAACACCAAACCAAAGCGAACC 40879 32 100.0 33 ................................ CCCTGTATAGCATATATCTCCCAGATAAGCGAA 40814 32 100.0 39 ................................ TCCGGATGGCCGATCCGAAAGCAAGGGCAGAGATGGCAC 40743 32 100.0 33 ................................ TCTTACCAGTAGTAAGGATGGATCGTTAATATC 40678 32 100.0 36 ................................ ACCGTAACGCCGGATACAAAGGTGTACCACGTGCCG 40610 32 100.0 34 ................................ AAAACTCAAGTTGTTTTTAGAAATGAGTCGGGTG 40544 32 93.8 34 ....................A.....C..... GCCATAATGCCGATCATTGCGGACGTTTTCTCAA 40478 32 93.8 0 ...........CA................... | ========== ====== ====== ====== ================================ ======================================= ================== 16 32 99.2 34 GTCGCATCCTATGCGGATGCGTGGATTGAAAG # Left flank : CCAAAATGGGTTTTCTGTAGAGGAAATGGACCTTCTATAAAGGATTGGACTCTCTTACGTTCGTGGCTATGCAGTTATAGGAATCCGTTCAGGCGCGACATTTCCTGGGGCATCTGAAGCAGCAGGGCAAGCCAACGCTCCACATGCTGTTCCATTCGCTCGCTTGGTCCGATCGGACTAATAGCGGCCAGCACGTTACCGTTGGGCGACGCAATTCCGGTAACGCCGATATTACGCATATCGATAAAACACATTCTTGTCAGGGGGCTGGAAGGAAAATGATTTTGCCTGCCGAATCATTGTAAGTATCAGGTAGAAATAATGAGCACGTGCAAAGAGTAGCTTATTTAGGTGCGAATGTGAAGTGCACATGATTTTCCTGGGGGATTCGCACCAAGAATATCTTGATCTTTATACATAAATGGGATTAAAAGTAAAAGCAAGTGGTGATTATGAGGTATAAAGACGGTTTTTGCAGCCATTTTGGCTTGAAAATCGGA # Right flank : TACTGCGAAGGTTATGCAAAACGTTATGCACGAGCCGATCCAACCGGATGCGTAAATAACCGAATAGCTACCGCTTTGACAGCCCCATTGTAAACTCGCCAATTTCGCAAATTTCATTGTGAATTGGCGATTTTTTATTTTGTGCTGATTTAAGATAATTGTTGAGGTATTTAAATTTGCTTGTGACCACTAAATCAGAAATTATTGACAAAACCTTGTCCTTTATGACTGATATGGGTTATTCGAATCCATAATAATTGATTTTTTGGAAGGATATCTCAATTACCTGTCGAATGTCGTTAACAATAAGGGAAAATTGTCGTAGATATTTGGTCCTGGTAGAGATGGGAGAATCCTGTTTTAGGAGGGGGAGGAATGAATTATATCGCCCATATTCGCGAAAGCGATCATCAAATACAAACAGTTGAAGAGCATCTTCTAGCAGTAAAAAAGTTGGCGGAATCTTTTGGGGAAAAATTAGGCGTCAAGCATATAGCCGG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGCGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //