Array 1 719078-718846 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL872339.1 Haemophilus parainfluenzae ATCC 33392 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 719077 32 100.0 36 ................................ CGCAAAATGAAACAATGACACGCACAATCAAGCTAA 719009 32 100.0 34 ................................ AGGGCAATAACTCACAAAATCCCATGTTTTATAT 718943 32 93.8 34 ..........C..C.................. TACTTTTTCTTGTTTTTAAATCAAGATTTAACCA 718877 32 87.5 0 .............C.......CA........A | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 95.3 35 GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AACAAGGCATGGCTGAAGTGGCAGTGAAAAACAAATTCTTGCTTGGTGATGAAGTAGAAATGATGACTCCACAAGGCAATATCGTCTTTAAGATTGAAAAAATGCTCAATCGCAAAAACGAAAATGTGGAAGCCGCACTCGGCGATGGCCATTTTGTCTTTTTAGATGTGCCACAAGACATCCAGCTTGATTATGCCTTGTTGATGCGTAACCTAGTCAACACCAACACGCGCAATCCACATAATTAATTTGTTAAAAAAATGTTGCATTTGTTAATAAATAAACTATAATACGTCCCATACCTGATTTGTTAATTCAACAACTCATAGTATGACTCCAAATATTTTGCCCTTTCACCTTTTTGAAAGGGCTTTTTTTATGCCCAAAATAAATTTTGAGATATAGATCACAAATTTAATATATATTTCATTATCATATTGAAGCCATAATAAAAAGGCGTACACTATCTCATAATTTTATATTTAACAATGGGATAATAG # Right flank : ACAAGCACCGAAGGGAACAACGTTAGTTAATAAGGAAAGAACATGGGCGTTAAACGCATTGTGGCCAATATCAACGTAACCCAACCCGTCGCAGCAAAGGCTTTCTACCATGACTTGCTTGGACTGGAATTGCTAATGGATCATGGTTGGATACAGACCTACGGGCAGGATACAACCATGTCTGTGCAGGTTAGTTTTGCCAGTGAAGGCGGTTCTGGCATGCCTGTGCCTGATTTGTCTATTGAAGTGGACAATCTGGGCGAATTATTGGAACGGATGCAGCATGCTGGTTTCACACCTGAATACGGACCAGTCACTGAGCCCTGGGGCGTGCGCCGTTTTTTTGTGCGTGATCCGTTTGGGCGGCTAGTGAATATTTTGCAGCATGAATAAGTTAACTTAATGCGTGGCTACGCCATACACCCTAGCCGCCTCCGCGCGGCTGTGTGTTGAAACATGGAGAAAGGAAAATTTTTCACATCTAAATAGGCTGCGCCTCT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1034076-1036094 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL872339.1 Haemophilus parainfluenzae ATCC 33392 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1034076 36 91.7 30 ..AA..A............................. GGCGTTATCTACCGGAACAGGCAAACAAGA 1034142 36 100.0 30 .................................... GCAATCACAATATCCATCGAGCGCAATTGG 1034208 36 100.0 30 .................................... TAAAAAACCGCACTCTGTTTCCAAAGTGCG 1034274 36 100.0 30 .................................... AGCCAATCTTGTTTTATCTTCCAATTCTTT 1034340 36 100.0 30 .................................... TCACGGCGACTTATCATGGGCAATTATGAA 1034406 36 100.0 30 .................................... GCCTAATCGAGCAAATTGACAGCCACGCGG 1034472 36 100.0 30 .................................... TTTTTGCGTTCCCAAGTCTGGACGACTTGA 1034538 36 100.0 30 .................................... GCTTACGTAATTTTTTAATATCGCCTTTCA 1034604 36 100.0 30 .................................... GCAATCACAATATCCATCGAGCGCAATTGG 1034670 36 100.0 30 .................................... ATAGAGCTAAAGGCCTCAATGGAGTTTTTC 1034736 36 100.0 30 .................................... AGCCAATCTTGTTTTATCTTCCAATTCTTT 1034802 36 100.0 30 .................................... GTTATGTCTGGCGTATTGTGGCAACAAAAT 1034868 36 100.0 30 .................................... CCACATCGGCACAGAATAACGTGCAGTTTC 1034934 36 100.0 30 .................................... GCAATCCGTTGAAGTGCAAGGCGAGTTTAT 1035000 36 100.0 30 .................................... TGTTTCAACGCTTCATTCAAAACAGTAAAA 1035066 36 100.0 30 .................................... CAGGAGGCAAACGATACTTACTCAAATCTT 1035132 36 100.0 30 .................................... GCAAGTTGAGTTATACAATGTCTATGCCGG 1035198 36 100.0 30 .................................... TGAACAAAACGCAATGATCGAGCTTTGGGA 1035264 36 100.0 30 .................................... GAGGTGAAAATGGAAGTGCACATTAATGGG 1035330 36 100.0 30 .................................... CCGTTTTTCAGCGTTCTGCCTTTCGTCATT 1035396 36 100.0 30 .................................... AATTAGGAATAAGTTTCGCACTCATATCTG 1035462 36 100.0 30 .................................... CATGGTTCAAAACATTTGACATAGCAATTT 1035528 36 100.0 30 .................................... TTTATTTCGGTCATACACTGACAACATCTG 1035594 36 100.0 30 .................................... ATCTTAACTTTAAATACTTTAGAGCAAGCA 1035660 36 100.0 31 .................................... TTTTATTAGCGTTAATTGCTATGCGTATTTA 1035727 36 100.0 31 .................................... TTATCAACGCTCGGGAATCCACCAAAATTGA 1035794 36 100.0 30 .................................... TGTTTGGATTGAGCAGATAACAAGGCTTGA 1035860 36 100.0 30 .................................... AGATTTTGAGATTGCTCCCGGTGCAATCAT 1035926 36 100.0 31 .................................... TTGGCCGTTCTCTCTTGATTTATCTTCGCTT 1035993 36 100.0 30 .................................... GGATTGAATAGCCTTATTTTCATCTACCAC 1036059 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.7 30 GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Left flank : TCTTACTATTGGTGAAGTAAAAGATGATGAATTCTGCGTGAATTTAATCCCTGAAACTTTACACCGAACCTTGATCGGTAAACGCCAAATTGGCGATTTAGTAAATATTGAAATCGATCCGCAAACGCAAGCGATTGTGGATACAGTGGAGAATTATTTAAAAGCAAGAGGGATATAGTTAATTAAGATTACTATAAGGAGGAAATATGTTTAAAGATGAAATTGCTCTTATTCGCTTTTTAGGCAGAGAGTTTATTGCCATATTTAATGTGTTTTTTCTATTTCCGCTTTCAATTATTTTAGTGCTGATTGGCGTTATTAATGGTGTAATATGGAATGTACTTTTAGGTATTGCATTTACTTACCTCGTATTTCTTGTCTTATTTAGGATATTAATCTATTTTTTTATATAAAAAATGGGAGAGAGAGTATCAGAAACAGATGCGAGAAGAGAATAAAGTTAAATACATTATTATTAAATAATAAATTTATACTGTATT # Right flank : TAGGGACGGCAAAAAGCCCCATACCGCAAGGTTTAGGGGCTTTTGTTTTATCTAAAAAAACGGTTAAAAAAGCAGTAATTGATTTGAATTGACCTTTTTTTCTTGCGTTTTTTTCTCTCCCACTAAAATTTCCATGCTCGCAAATTGTTTTTCTGTAATAGATAAACATCGAATTGAGCCCTCTTCAGGTAAGTGTGCGACGAGCCTTTTATGATGTTTTTCTAAAGCATCTCGCCCTTTAATAATTCGAGTGTAAATAGAAAGTTGCAACATTTGATAACCATCTTTAAGTAAAAATTGACGAAATTGGTTTGCAGCCCGCATTTTTGCTTTAGTGGTAACCGGTAAATCGAATAAAACGATCATACGCATAAATACCTCCTCACTCATATTGATATTCCTGCAATGTATCGATCTCTGGTAACTGCAATAATGTTGCACTTTTTTGAATAAGTGCAATTTGTAAAGAGGCAATGGTTTTATCAATAGCAGTCAAAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //