Array 1 157031-160919 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFHR01000003.1 Clostridium perfringens strain An68 An68_contig_3, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 157031 30 100.0 36 .............................. TAATCCATTTTTAAAGAAATTATTTAAATAAGTTTC 157097 30 100.0 36 .............................. TTAAATTGTTTTTCTATTGTTACCCTGTGTGCTCTA 157163 30 100.0 35 .............................. CTTTAAAAAAGTCCTTAAGTATCTTATTGATCTGT 157228 30 100.0 35 .............................. AGTTTAACATGGTGCTTTGTACAAGAAGATAGAAT 157293 30 100.0 36 .............................. GCTAACTTAACATATAATCCACTCATATCTCCATAA 157359 30 100.0 35 .............................. AGATTTCAGAATTCTATTCCAGATATAGAACTTCC 157424 30 100.0 35 .............................. AGGATTCTTTATACTGCTCAAAGGTATAGTAGAGT 157489 30 100.0 36 .............................. TATCTTCTCTTAATAATCTCTGATAATGTTTTCCAT 157555 30 100.0 36 .............................. ACAATGTACTAGATATTAAAAAGGAGTGAAAATTAA 157621 30 100.0 36 .............................. TCAATCATTTTGGTTACATCTTCCCTAAGTTTATCT 157687 30 100.0 35 .............................. CAAATAACATATGGTTATGGAGTTACTCAAGCAAA 157752 30 100.0 36 .............................. TTATTTTTATTATGTTAATATTAAATCAATAAAAAC 157818 30 100.0 35 .............................. AGGTATATGGAAAATATGGATAAACTAGAAGGCTT 157883 30 100.0 36 .............................. CTTTAAGAAATCTTCATAGCAATAGTTCATATCTAC 157949 30 100.0 39 .............................. ATGGTACAGTAATGGAAGCTAATAGAGTACACCACATTG 158018 30 100.0 35 .............................. AAATGGAGCTATATGGGTAGCTAATAAAGCTAAGA 158083 30 100.0 37 .............................. TATATAACGTTGGAGGGGATTTAGTTTTTCCAATTTA 158150 30 100.0 36 .............................. TTACGTAGAATTTGATAAATACAATATATTAAAAGA 158216 30 100.0 35 .............................. GTTCGTAAGCTTCTCCAGCTACATTAACGGCTACG 158281 30 100.0 35 .............................. CATCAATGAATTTTTACTTTCGTTTAATGTTTTCA 158346 30 100.0 35 .............................. CCGCTAGTATTATAATAATATCCTCTTTGAGCAAC 158411 30 100.0 35 .............................. CTATTTCTACAGGTTCACCCTTTATATATATAACC 158476 30 100.0 36 .............................. AAAAAGTTTGAAAGAATGTAATATTGGTTTAGATGC 158542 30 100.0 35 .............................. TATTATAACGCTTACCATTATGAATATATACCAAA 158607 30 100.0 36 .............................. AATCAAAGAGATACTAAGTAAATTAACAGTTGTCAT 158673 30 100.0 34 .............................. GTTATTAGCTATTTCATCAGAACTTATTCCAGTT 158737 30 100.0 36 .............................. CGATAAAGAACTTAATAAAACACATGTAACAGTTCA 158803 30 100.0 34 .............................. TAGCTGTTGTAACTAAAAATGATTCAACAAGCTA 158867 30 100.0 36 .............................. GCTAGGGGCTGTGGTAATTACAGTACATTTAGGAGG 158933 30 100.0 35 .............................. GTATTTTTATCAGGATATTTATTATTAATAGTTTT 158998 30 100.0 36 .............................. TCTTTTGCCCTATAGATAACCCATTAAAAAATTTAG 159064 30 100.0 34 .............................. GAGGGTTAACTAAAGAGCAGAGTTTACCTACTGG 159128 30 100.0 34 .............................. CTAATACTCAAGCAAAGTTGTTTGGAAGTAGTAC 159192 30 100.0 36 .............................. ATAAGTAGAATAATCAAAAATATTTCCTAGTTCACC 159258 30 100.0 35 .............................. GATTGGCTGGAGAGCTAAGAATACTAATGGGAAAT 159323 30 100.0 36 .............................. TTTATAATATAATAATGTTAAAATAAATTTTAGGAG 159389 30 100.0 34 .............................. GTTCTAAATCACTATCTGTTAATGATAGTGTAGT 159453 30 100.0 35 .............................. GTTTTCTCAAAAGCTTATTGACTTTACCGAAACTA 159518 30 100.0 36 .............................. GAAATAAATGGCACTAAATGATAAAACAATAAACTT 159584 30 100.0 35 .............................. CCTATCCAAACTCTGCATTTTTCTGCATTAGAATC 159649 30 100.0 34 .............................. TTCTTGTAAGAATCCATTAATAGCTTGTATTTTC 159713 30 100.0 35 .............................. TCTCTCCAAAAGTGATTTCCATTTTCGTCAAAGAC 159778 30 100.0 36 .............................. AATGGAAACTAGAGGGGGAAATGATGGTCCAAGAGG 159844 30 100.0 35 .............................. GTTTTCTCAAAAGCTTATTGACTTTACCGAAACTA 159909 30 100.0 34 .............................. CTATTATTAGCACCTATAACACCAGTTCCTGCAT 159973 30 100.0 35 .............................. TTCTTATTCTGTAAAAATTTTTAGAAGAACTATAT 160038 30 100.0 35 .............................. AGCTACTGCAAAGGGTTTATTAGAATTCACTAAGA 160103 30 100.0 36 .............................. CTCATGGTCTAGCTCACATTCTCCACAAGAATAAAA 160169 30 100.0 35 .............................. TAAGTTTTTTAGATTGTATAGCAACTTTAAATAAT 160234 30 100.0 36 .............................. TTATTTAAGTCAATTTCAAAAGAAGCATCCATATTT 160300 30 100.0 35 .............................. GGTCATAAAGTTTACAATATGGCAAGTTGTATTTA 160365 30 100.0 35 .............................. GGTCATAAAGTTTACAATATGGCAAGTTGTATTTA 160430 30 100.0 36 .............................. AAACCCTCTATATCATTATTTACTATAGCGTAATCT 160496 30 100.0 35 .............................. TTTCTAAAGCTATTATCTGCATCTCCATTAATTGC 160561 30 100.0 36 .............................. TATGAAATAGCATAATATAGAAAGGAGAGTGAACTA 160627 30 100.0 36 .............................. TACCATCTACGCTCATAATAGTAAGCTGCTTGTAAG 160693 30 100.0 36 .............................. TGTTGGCAGAATATTAATTACTTCATCGTAAGTTTC 160759 30 100.0 36 .............................. TTTATCTCCAATGGTAACAAATCCATCAAAATCAAC 160825 30 100.0 35 .............................. TTTTAGTTAATCCAACGATTAATTCTGCAAGCTCC 160890 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 60 30 100.0 35 ATTTAAATACATATCATGTTAAGGTTCAAT # Left flank : ATTGGATTCCAATAGAAGAACTAAGTAATTATCGCGCTTATCCTACATTCTTTAGAGAAAAGTTAACTAATCTTAAGAATGAGATTGAACACATAGTAACTTATGAATATTAGGATAAAAAATAAAACTGATAAAATACTATTTTTATATTTTATCAGTTTATTTTTATATTATAAACTTTTGATTTTAAGATTATATTTTTTAAATTATATTGGTTTACTTTTGATATAATATTCCAATTTTCTCCATACATCCATACTAAAAGACAAAAACTTAAAAATAAAGCCATTCCAAGATTCATAAGCCTTATAAAAATATTAGATTTTTCTATATCTTGCCACCACCAGAATTTCAAAATATTTTTTATAATAAAAGATAGTTTTTTCATATTATACCCCTACTTAATTATAAAACTTTATATAGAAAGACATTAAGTAATTATATTATACTGAAAAACAATATAAATTAGTTACTTAATTTTTAGTGAATTCAGTATTAAT # Right flank : TACTTGTAAAATAGCCATTTTTAAATTTAATAAATATATCTTAATCTAGTTATTTCAATACTTATACTATAATTTTACCAGTGTTTTATTAAGAGTTAAAGAGGATATCGAAAATCAGTCTAAAACTTAGTTGTTTCAAGGGTTTCGCAAACTTTTTCCCACTTAAATCACTGGTAAAATTATATGTTATTTTGAATTAATTATTAAAGTATCAGTGTTTCCCCATTAATTACTTCTTGAATTCCTAGCACTTCTTCTCCAAATACATTTCCGTTTAATAATTTAACAATACATATGAAGTCTTCATCTTTTTCTATTACTTTATTTAAATCCTTTCTTAAGTTTATAAGATTAGCAGGGGTTATTTCTCCCCTAAAAACTGATTTTTGAAAATGAGATAAATACTTCTTACAAACTTTAAACACCCTATTTACCCTCTTTTCATTTACATCATAAAATACAAAAGCATAATTATAATTCATTTTACTTTTCATATCTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATATCATGTTAAGGTTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [85.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 173638-171250 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFHR01000003.1 Clostridium perfringens strain An68 An68_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 173637 30 100.0 35 .............................. GTATATAGGAGATTTGGATGAAAAGGCAAAGAAAA 173572 30 100.0 35 .............................. TTGGAAAAAAGATGAACAATATATAGGTGGACTTA 173507 30 100.0 36 .............................. TTTTAATAAAAATATACATACCCTTCAAAATGGCAT 173441 30 100.0 35 .............................. TGTTGTCCTTTGTAATACGCTATACCTTCCTTAGC 173376 30 100.0 36 .............................. AGCTTTAGCTTATACAGGAAGTTCTATAAATGCTGA 173310 30 100.0 36 .............................. GACTTAACAAGTAAAATAATAAAAAATAAAGAAAAT 173244 30 100.0 35 .............................. TTTAAGAATGTTAATAATATAAGTGGTGTTTTTAT 173179 30 100.0 36 .............................. TTTTATGAGCTGGAGTATCTATTTTAACAAATATAA 173113 30 100.0 36 .............................. GTGTTTGAAAAAATCAAAAAGGTTAAAACAAGGTGT 173047 30 100.0 36 .............................. TATTCCGTTCTTTTTTAAATTTATAATCTAATTATA 172981 30 100.0 35 .............................. ATATAACTTAAGTATTAATAAACAAATTGGTAAAG 172916 30 100.0 35 .............................. ATTAAAGGTTTAAACTTTAACCTAAATTTTGAAGG 172851 30 100.0 35 .............................. AATTTAAGTATGTACTATAAAAAATATTTTAATGA 172786 30 100.0 36 .............................. TAATTTAGGAGGGATTAATTCCCTTCTTTTTATTAA 172720 30 100.0 36 .............................. AAATATGGATGCTTCTTTTGAAATTGACTTAAATAA 172654 30 100.0 35 .............................. ATAAAAACGGAATAAAAAGACAAAACCCGCAAGAT 172589 30 100.0 36 .............................. TCTATTTTATTTATTAGATCTATAGCCTTTGGATAA 172523 30 100.0 36 .............................. AGGTGGGATAAGCATGAATTAAAATGTGCCTGCTTA 172457 30 100.0 35 .............................. CCCAACAATTATAAAAATCTACTTCTACACCTTTT 172392 30 100.0 34 .............................. TAACTTTATATCCTCCTTGATTTCCCACCAAAGA 172328 30 100.0 37 .............................. TTTAGTGCCATTTAAGTTCTCCTTTCTAAATAAAAAA 172261 30 100.0 34 .............................. ATGTATGCACAAGCTCCTACTGCATGTTGAGTAG 172197 30 100.0 35 .............................. TATGGAATGAAAGCTGATGAAGTTACTAAAGTAAG 172132 30 100.0 35 .............................. TAATCATCTTTAAAAATTTTAATCATAAATTATCC 172067 30 100.0 36 .............................. AGGGAATGGATATAAGGAGCAAGATTTAACAAGACA 172001 30 100.0 35 .............................. TTAATGCTCAGGACTATAATATGTCTATGGCGAAC 171936 30 100.0 35 .............................. TAAGTTTCATATTCTTTCCCATTAACTTGTATTTT 171871 30 100.0 34 .............................. TCTTCTATAATTCTAGTTTTTGTATGTTTAACTA 171807 30 100.0 36 .............................. ATGATAGAGCGTGGGAAAAGGGTTCCAACATTAAGA 171741 30 100.0 36 .............................. AATAACATACCTAGTGTATGTTGTGGTTGTGCTACA 171675 30 100.0 36 .............................. TATTTCCCTCCCATTTCTTAGCAACTTCGCTAAATA 171609 30 100.0 36 .............................. TTTGGATAGAATCTGAGAATTGCAACATTAAAGAAG 171543 30 100.0 35 .............................. TCAAATACTTTTATTCCTTCTTTTATTGGTTTTTC 171478 30 100.0 35 .............................. AAAACATAACAGTTCCTACAATTCTTACATTGAAC 171413 30 100.0 36 .............................. TACTTACGGAACAACTCAGTAATACGCTTATGAATA 171347 30 100.0 36 .............................. GTATTTGGGGCAACTCGATAAGATCCTTGAAGCTTT 171281 30 100.0 0 .............................. | TT [171254] ========== ====== ====== ====== ============================== ===================================== ================== 37 30 100.0 35 ATTGAACTTTAACATGATATGTATTTAAAT # Left flank : TAAACTTTTTCATAACAATATACCTCCTTTAAAATAAAAAAGCCAGAGAAATATTATAAAAATATCTCCCAGGCTTTTATCCTTCCGTGTTCACAGTCTTTCTGTGCGTTTTCTCTTGGACCAGACTAACTAAAAAGCTACGGAACCCTAGAAAACCATATATTATTAAACTTTAATTAACAAATTCAAAATTATAAGTTAATTTTAGCATAGTATAAATGCTAAATCAATTCACTGATAAAAATTTGAAGCTTACTGAATAGGTGAATTTTAGTATTTAATTAATGCATTCTTAGAAACATTTATAAATACACAAATAAAATTTTACCAGCCTAAAATTATATGAAATTACCCTTTAGACCTTGAAATAACTAGATTATAAGTTGATTTTATATTAGTGCTTTAAATTAAAGTGAAACACTGGTAAAATAATAAGAGAGGTGTTGAAATAACTAACTTAAAGATAAATATCAAGAAAAAGAAATGGCTATTTTACAAGC # Right flank : AAGAACTTTAAATATTAAATTGTTGAAATAGGAATATTGCGATTACTTTTTCTAAGCTGATTAAAATACTTTTATTATTAACTAACATTTTATTAAATAATTAATATTACAAAAATGTATAAATTTATAAAATAATTATTTGTTTTACAAAATTTGTTGGGTAAAAATTATAATTATAACTATAATATGTAATATTTTTGTAAGATGAAAAGAAAAAATGCTTTAAAATATTAAAATGATTAAAAGATAAATTTTGTAAAAATAGTTTTTATTGGTATAATTAAAACATCAAATGTATTTAATTTATATAATAAAGTTTTTAATAACTCGTAGAGTATTTAAAGAATGTCTTTAATGCATAAAATATTTTAACCATAACATTAGATGTACTAAACAAAAGATAAACTAAATTATTTGATTTTTCAATTAATTATTTAAAATCAATTTTAATAAAAATACATTAGATTTATATAAGGAGGTGAGTAAGGTGAAAGTTTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACTTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //