Array 1 76170-74882 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZYZ01000029.1 Providencia alcalifaciens PAL-3 contig00013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76169 28 100.0 32 ............................ AGCAAGTTACGTGAAGACGTTGAAAACGAGTT 76109 28 100.0 32 ............................ TAAATCAGTGGCGCATGGCTTAACGTCTGGCG 76049 28 100.0 32 ............................ GCCACGTTGAAAAACCAAGCTGATATCTCGGT 75989 28 100.0 32 ............................ AGAGTATGAATCCGATTCCGATCTACGGGTTC 75929 28 100.0 32 ............................ ACCAGCAAGTTTTATGAAGCTTCCAAAGCTTA 75869 28 100.0 32 ............................ AGTGTGGTCACCTGCGTTGAGTTTTTTGAGTA 75809 28 100.0 32 ............................ TTCTGATTCATCATTTAAAACAATCTTATTAT 75749 28 100.0 32 ............................ TAATAACGCTGATGTGGCTAGCCGACCATACG 75689 28 100.0 32 ............................ ACTGACAATCACCACTGGCTTGCCAAAATGAG 75629 28 100.0 32 ............................ AATCACGTCCCCATCCCGTACCGATAGAATAA 75569 28 100.0 32 ............................ CAATGCCCCCGCAAGGGGCTAACCCTTGGAGT 75509 28 100.0 32 ............................ TGACAGAGTGAGGTGTCAATGTCCAACATCAG 75449 28 100.0 32 ............................ TCTGATTACTGGAATCCAGCGATAGAAAAAAT 75389 28 100.0 32 ............................ AATGATGGCTATCAATAGTTGGTTTAAATCCC 75329 28 100.0 32 ............................ ATCAGGAAGGCGGTGAGATTAATATGCCAGCA 75269 28 100.0 32 ............................ AGAAATAGCTAGTTCCGTAATTTGAGAAATAG 75209 28 100.0 32 ............................ AGGGGAAAAGAAAGACGGTATTCAAACTATCC 75149 28 89.3 32 ..........GC.T.............. TATTGAGGGTGTTGTTAATCCCAAAGTTGGAT 75089 28 89.3 32 ..........GC.T.............. GTTATTAACTAAACACGATGCTAGTCATCTTC 75029 28 96.4 32 ........T................... ACATGCTGCACCCACCCAAACGGCTGAAGCTC 74969 28 92.9 32 .........A.C................ ATGCGTAGAGCGTAGTATCTGTGGTGTCCATC 74909 28 82.1 0 ...........C..T......A..T.T. | ========== ====== ====== ====== ============================ ================================ ================== 22 28 97.7 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : ATAAAGTCAATACAAACGGTTCCTGAAAATGCTCGTCCGGTAAGTTATATCCGTCGGCAAGTTAAAGGGACGTCGCGCATTGAGTCGGATATGCAGAAAAAAGCGATGCTTTGGGCAAAAAAATCGGGGCAACCGTTAGCTCAGTGTTTAGCGGATCTCGAAAAATCTCGCCCGACTAAACACAGTCGATTGCCATTTATCTGGGTGGAAAGCCAACAGAGTAAGAGTGAACAACGGGGGAATCGACCTTTCCCGTTATTTATTCAATGTATCGAAGTAGATAAAGCGGTTGAAGGAACCTTTAATTGTTATGGATTGAGTCAGCCTAATAATGATGGACAAGCCTTCGCTACCGTTCCTCACTTTTGACCTTTGTTTTTTGCTCTTTAATAACAAGATATAAAATCAATAAGTTACAGTAGTCAGCAAAAATAAAGGGTATTTTATTAAAAATGCCCTTAACTGATTGTTGTAACTTATTTTTTGTTTGATATTTTATT # Right flank : GAAAATAACTTCATATAATGGAATAACAAAATTGTACTAGAGTGCAATTTGCATCATAATGCAATTTACTGAGGGGGAATATGTATACAGTAAAATATCATTTAGAAGCTGAAAAAGAAGCAAATGCATTACCTCTAAAAATAAAAGTAAAGTATGACCGAATAATACAAAAGCTTGAAAAATTTCCAAATTATTTACGGGAACCGGATACAAAATCGTTAGGAAATGGGCTTTTTGAACTTAGAACAATGGGCAGTGAAATTGCCAGGGGTTTGTGGGTATACCATAAAGGCAAAACAATCATTATCTTGAGGGTTTTTATCAAAAAGTCGCAGAAAACCCCAAAGTCAGAGTTTGATTTAGCTAAAAAACGTTTGCAGGAGTTATTAAATGATGAAAACGCATAAAGAATTGCACGCGGAATGGATGAAAGATCCTGAATATCAGGCAGCATACGAAGAAGAAATTAGAACTGAAAAATTACAAGCGATGCTTAAAGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 88313-87263 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZYZ01000029.1 Providencia alcalifaciens PAL-3 contig00013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 88312 28 100.0 32 ............................ TTCACATTGAGCCTTAAACTTTACCACATCTA 88252 28 100.0 32 ............................ TCACGATCACCGCCATTTTCCTCAGTCAACTT 88192 28 100.0 32 ............................ GTCATGATGTGGCTCGACAACACGGACACCGT 88132 28 100.0 32 ............................ AAAATAATGGCATTAGACGCACTCTGCATTCG 88072 28 100.0 32 ............................ AAATTAGATAGCTCCGCACTCGATGGGTACGC 88012 28 100.0 32 ............................ TTGGGAAGGTTTTGAGTGGTTAGACCCTGCTG 87952 28 100.0 32 ............................ CGATTATATCGGGGGCATTCATGCCGCGTTAT 87892 28 100.0 33 ............................ CGAGACTCAAGGGAACAACAGGCCGTGACATCT 87831 28 100.0 32 ............................ TACAGCCAAGCGATAACCAGAGGCGATATTTC 87771 28 100.0 32 ............................ AACCAGAGTGATTATATTTTCATTAATTGATT 87711 28 100.0 32 ............................ TTCTAAATAAACCGTATTCAGGTAAACCTGAA 87651 28 100.0 32 ............................ TGATGAACATTGATGACATGCTCCCGGCAACG 87591 28 100.0 32 ............................ TAACATCATTGCAGCCCCAATCATGGCTACAC 87531 28 100.0 32 ............................ TGGCAAAGCAGACCGCAACGATATCGCCTACG 87471 28 96.4 33 .........T.................. CTCCATCTTGTCACGGACGTCATAATATTTGTC 87410 28 96.4 32 ..............G............. GGAAAACCTGCTCGCTGTAGTGGATAGATTGC 87350 28 85.7 32 ..........GT.C..........T... GAAAGAAGATGAGCAGAAAATCGCACTGTAAT 87290 28 89.3 0 ..........GT............A... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.2 32 GTTCACTGCCACATAGGCAGCTTAGAAA # Left flank : GATACCCGTTCAATCCAGAATTCGGCACGTAAAAGTGAGTTGTTAGAGACTAACTGGACCGCAGCCACAACGGATTATTATAAAGAGAAGGCGATGTTCCAAGCTTCTCAAGATATTTTCAAAGATCTAAACAGCATGTCATTATTTGGTGGCCGTTAATTGATTTTTACCGCACCCTGTAGCAGTGGCATGTGTATCGGGTGCGGGTTTTCTTCTGAGATTATTTTCAATTTTCCCTTCTGATTTTTCTCGCCTAATTTTTTAGTGTTTTAATATTTATATTCCAATCTATATTTCCGCTTTTCTCGTTCGAAATAACAGAGTTTATTTTTCTGTTGTTGGCTTATAGTATTTTTCACGATAAATTTGACCTTTGTTTTTTGCTCTTTAATAAATTGCTGAGTAAACAATAGGTTATTTGTTAACTGAAAACGGAAGGTATTTTAGTGTATTTCGAGCTAATCGGTTGTTGTGATTTGTTTTATCTCTGATAAGTTATA # Right flank : GGATGTAACTAAATCAGTGGCTATTAGCTCTCATCATTAACAAATCTTTTGATCTTAGCGGCTTGCTTGGATAATCCATCAAAAATGGCGTTACTTATATGCTTAGGAAAGTCTGTGGGTAGCTGAGGCAATAGGGTAGCTATAACAGTATCTGTTTTATCGGCCATATCAATCATGAGTTGAGTTGCTATATTTTTTGAAAAACCGACATATTCAGCGGTGCTAATGAAATGACGAGGTTGAATTTGTGAAAAATGGTATTGCTTATTTTTCCCTTGTAATGCCATCGCCATTTTGGCCTTTCTGACCTCAATCCCTCGTGCAGCAAATATCGGGAACGCGGACATAACATCATACAAGGGCGTTAAACGAAAAGATGACCCAAGTTCAATGAAGAGAGAAAAATTCTTGCCATGTCCGTCGATTGCACCCAGCATCCAGAACAGAATTTGTGATTTAAAGAACATTTCCCTGTCTTCTTGTGGTGTTTTCGAGCCCAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCACATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //