Array 1 1823168-1822803 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VSEC01000001.1 Aggregatibacter actinomycetemcomitans strain PN_561 1, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	=================================	==================================	==================
   1823167	    33	 100.0	    33	.................................	TTACCTGCACCAATCGATTTATTAGTAGTAATA 	
   1823101	    33	  97.0	    33	.................G...............	TCCCACGTCTGCGCAATATATTTTGAGCAATAT 	
   1823035	    33	  97.0	    34	..............A..................	AAAACGGTGATGATAAATGCGCCGTTTTGCCTGA	
   1822968	    33	 100.0	    34	.................................	ATGACTTTGAATTGTTTTGCAGATCTAGGCAAAA	
   1822901	    33	 100.0	    33	.................................	GATGGTGTACTAAACCTGATGTAATGCTAGTAT 	
   1822835	    33	  78.8	     0	..A....C.C..........A....C.....TT	|                                 	
==========	======	======	======	=================================	==================================	==================
         6	    33	  95.5	    34	GCGGCCATCTTCGGGTGACTGTGTGTTGAAACA	                                  	       

# Left flank :   TCAATGCCGACAATGATTTTGAACAGACTGTATTGCCCATTGGTGCAGGGCTACTGTTAGTCGTAAAAATGTAGATTGGGTTGCGACGTTCTGTTTAATTCAACTTACAAATGCTTTTAGTCACTCCGAAAACCGATTGGTTAAAAACAAAAAGTGCGGTCAAAATCCAAGTCGTTTTTAAAATATACGGAAACTGCAATATATTCCCTGCATTATTCCATCAGGCACATTTTTATTTGGGGAATTTTGTTGGTGCTATCTTTTTTAATAGTATTAACGGCGTACCTTCAGCGATGTGCTTGTTATTCAGTTCGCTAGCCCATGCTTCTCATCAAATTCCTGCAAGCTAGCGATCCTTATTTTCTTTAACAATTTGCAATAGTTAATTCATTTGTATAACGATGACATGCTCGTTATACTTATTCCACTCTCTATTTTGAAATAAGTTAGCGAAAGACAGTAAGTAATCTACTGATTTTTCTTGTTTTTTCATATAGGTA
# Right flank :  ACTTGGTATACGCTTTTTATGAGCATTTAATCGGTTAAAAATATATGAGCTTGTTGCCTAATGGTAGGGCGGCGTTTAACAAAACGCTCTGTGCGAGTTTGATACTCGCCAAGCTCACTATTTATTGCCCTGCACAATTTTATGTAATCCTTTCTCAATTTTATTCAACATACGGGTAATCTCCAAAAAAACACCTCTAAAATCGACCGCACTTTTCCCCATAAATAAAAAAGCTGAATCTCTCTCGAAATCCAGCTTTTCTTTTACCTATTTATTACGCTAATTCAGTGCGTAATTTTTTCGTGACGTCAACCATGACTTTCAGTTGTTCTAGGGTTTCTTTCCAGCCGCGGGTTTTAAGTCCACAGTCTGGATTTACCCATAAACGCTCTTTTGGCACCACTTGTAACGCTTTACGGAGTAAGTGTTCGATTTCGGCGGCGGTTGGGACGCGTGGGCTATGGATGTCGTACACGCCCGGGCCTATGTCGTTCGGGTAT

# Questionable array : NO	 Score: 6.04
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCGGCCATCTTCGGGTGACTGTGTGTTGAAACA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [9,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-2.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [7-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.28   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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