Array 1 2476-1295 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWHJ01000084.1 Klebsiella quasipneumoniae strain C2-129-1 contig_74_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2475 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 2414 29 100.0 32 ............................. GAAACTATTTCGGAGCATCTCATTGCTGAGGG 2353 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 2292 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 2231 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 2170 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 2109 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [2056] 2055 29 89.7 32 ......T.....CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 1994 29 100.0 32 ............................. CCGAGATTGATTAAAGCAAAGTAACGGCGGTG 1933 29 93.1 32 ............CA............... CAGGTTATACTGGCAAAACGTCGATGGCTCTC 1872 28 89.7 32 ..........GC.-............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 1812 29 96.6 32 .............C............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 1751 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 1690 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [1679] 1628 29 86.2 32 ...........CC..A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT TC [1612] 1565 29 93.1 32 ............CA............... TCGACCCGGTGCCCAGGAGAACTGGCTGAATA 1504 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 1444 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 1383 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 1322 28 79.3 0 ........T.A.CA.........-....A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 93.5 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 46724-45975 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWHJ01000032.1 Klebsiella quasipneumoniae strain C2-129-1 contig_25_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 46723 29 82.8 29 ....A.......T............G.GA ACAACGGACTGAGAATAACGCATAATGGC G [46702] 46664 29 82.8 29 ............T.C...........TCC GCGCCTGCGATTAGCAATGGCAAAAATGC G [46642] 46605 29 86.2 28 .........................GTTC CTGTTTGGCTTCGCGATTATTTCCACCT GCG [46588] 46544 29 82.8 29 ......T..................TCGC TGGCGTACTGTGGCAATCAGTACCGGTGA CG [46528] 46484 29 100.0 29 ............................. ACGCAAACACGGCACTACAGCAACGAGAG 46426 29 69.0 31 ..A................GGT.AAC.GT CAGCGACAGGACATGCCACATCACGTGAACC C [46410] 46365 29 86.2 29 .........................GACT GATTCATAACCTGCAACACGGTCTACAGA GCG [46348] 46304 29 75.9 27 ............TT.........T.GCTT GTCCGCAATCCGGCGTTTCATCGCCGT G [46289] 46245 29 86.2 29 ..........G..T.............GA TGGATGTCCTGCGAAATTACAGCGTGACA ACG [46228] 46184 29 96.6 28 ............T................ CTTGGCGGAGCCATTGTTGATGATTTGA G,GCG [46157,46167] 46123 29 82.8 28 ............T............GTGC CCCAATTCTTGACAGACTATCTCAAGAA G [46108] 46064 29 79.3 29 ..A........T.............GCCT TAAGACCATCACGACTTTCATGATAACCA GGC [46046] 46003 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 13 29 85.4 29 GTGTTTCCCCTGCGTGGGGTTATCGAGAG # Left flank : TAAAGACACAAAGGCGGATTTGCAGAAAAAAGTTAACGAACTGGATGAAAAAATTCAGTCTCGTAAGGATGAAAAATCCGAAGCCCGTGAGTCCATTCGTCGTCCTATTGACCCCTATGAAGCATTCATTGCCGGGGCTGAACTGAATCACCGAATGAGCATTAAAAATGCCACTGATGTAGAAGCAGGCCTGTTTATTTCTGCGCTTGTTCGTTTCGCTTCTGAACCGCGTCTCGGCGGTCATGCGAATCACAACTGCGGGCTGGTGGAAGCAAACTGGAGCGTCACGACATGGAAGCCGGGTGAACTCACGCCAGTCACCCTCGGCGAGATCAGTATTAGCCCTAGCGGTGTAAAAATCGAAGGTGAAGAGCTGTCCGCTATGGTCGCTGCTTTTGCAGAGGCAGATGGATTTGATTTTAAAGCCCGGTGATGCATAATTTCTCGGTAGGAAAAATATGAACTATTTTTCCTTTTTATATCAATGCAATATGATTAGA # Right flank : ACGCAAACACGGCACTACAGCAACGAGAGGTATTTTCCCTTCTTCGCGGGGTTAACGATGTTGTGGGCGAAGGAATATGCCATCAATAGCATTCCCCTTCTGGGGGTTAACGGGCCGTAAGAAATGCAAGTATTGATACATCCCCTTTTTTGGGGTAAACGCATGGTAAAAATGAATAGGATTTTTTAGCGAGAAAATCAGAAGAGGATTTAGCAAAACAGTTTTATTGCTACAAATACCCTTGCTGGTTAAAATACATACTGTATAAACCAACAGGGGTATCCGTCATGGATTTAAGAAAGACATTTGAACAACTTACCGACGAACTGCTTGCGCTGAAAAAGTTGATCAGCGAAAGCTCGCCGTTGTTTGCTCGTGTCTCGGTAATTCCCCCGGTTTTGCGCGGCGCGGAGAATGAGCCTGTTAATGAGATTGTTCCCATTCAGTTGTACGGGCGGGAGGCAATGATTAAGGCTGTAGATACGTGGCTTGACCTGCAT # Questionable array : NO Score: 4.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.30, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTCCCCTGCGTGGGGTTATCGAGAG # Alternate repeat : GTGTTTCCCCTGCGTGGGGTTA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGAGTGCGGGGATAAACCG with 86% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27403-27069 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWHJ01000033.1 Klebsiella quasipneumoniae strain C2-129-1 contig_25_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27402 29 96.6 32 ................A............ TATCAATAGCCCATTGATTTTCCTGACTGCTG 27341 29 100.0 32 ............................. AAATGCTGGGTAAGCGCACGCCGGAACGCAAC 27280 29 100.0 32 ............................. AAATGCTGGGTAAGCGCACGCCGGAACGCAAC 27219 29 96.6 32 ............T................ GAAATGCTGCGAGGGTGTTTTTTCAGCGTGCC 27158 29 96.6 32 .............C............... ATAGGTGCTCGCGCAATCGCGTTTGTCGAAGG 27097 29 93.1 0 ...........A...............T. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.2 32 GTGTTTCCCCTGCGTGCGGGGGTTATCGG # Left flank : GGGGGGCGGCGATCAGGTTTTTACTCAAAATGGGTTTTACGGTCGGCCTTGTAGGGTATCCCGCTGTAGGTAAGTCATACCTGCTCGCCCGGACACTGCCAGAAGGTATTATTGACGGTCGAGAGCTGGTGGCGAAGAACAACTGGGAAACGCCGGTGCCATTCCCTTCCGACAAGATCCCGTCCGGGCCTGTAGGCCTTGATGAAGGAAATGTGTTCGGGAGTCAGGCTTTGTTATCGGTAGCGGCGACCCTGAAAAAATGCGGTGTCGTGTTTACTGCTCAACGTCTGAAAAATGCAGAGAGCCTCGCGGCAAGTTTAATGGCGCGGCGTGTGCTGATTTTTTATATCGGTGAGTATGAGTCTTTTAAGTTTGAAGTTGCGGCACAGTATGATCGGCGCAGGAAATCCTGAACCTGCGGAGGTGATTTTTACGCCTCAGAATCTGGTGGAAAATGAATGAATAGAATTTGCATTTGTAATCAATAGTATATAGTTAGA # Right flank : GGCTATATCGAACGCGTTAATGGGAAGTGATTTTCAGGGAAAAACATTCGCTCGCAAAATACCTATAGCTAAAACCGGTTCGCCGGTTTTTTTTTGTGCCTGCGGTATTCGGCATATCTTTTGCGGGAAGGATAATAGATCCCTGCGAAACCATTTGAATAAGGTGACAATAATGGCTCAGGTTCAGAGAGGTAAAACGGTTCCCGTTCGGCCATCAGCGACGTATTTCAGCTATAGCCCCGACGACGGGTATGAGGAGCATGACTCCCCGGAGAAGGCAAAAGCAGCGGCAGACGCTGCAATTGATGCTTATCGGGGTGAAGCATGTGATGGCTGGCCTGATGAAGTGACCGGCGTTACGTGGGGTGTGGTGGCACAACGAGCGGCAAAGTTTGGCGAGCGTAAGCGCACCAATGAAGACGCGCATCTTTCTCCAGAAATTCAAACGGTCTGTGACTACTATCTTGCGCCGGAAGTGACCGTACCAGCCTCACTCCCCT # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTCCCCTGCGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //