Array 1 29197-27276 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLK01000011.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712450, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29196 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 29135 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 29074 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 29013 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 28952 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 28891 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 28830 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 28769 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 28708 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 28647 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 28586 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 28525 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 28464 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 28403 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 28342 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 28281 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 28220 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 28159 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 28098 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 28037 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 27976 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 27915 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 27854 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 27793 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 27732 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 27671 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 27610 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 27549 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 27488 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 27427 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 27366 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 27305 29 93.1 0 A...........T................ | A [27278] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47320-45704 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLK01000011.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712450, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47319 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 47258 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 47197 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 47136 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 47075 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 47014 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 46953 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 46892 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 46831 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 46770 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 46709 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 46648 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 46587 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 46526 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 46464 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 46403 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 46342 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 46281 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 46220 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 46158 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 46097 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 46036 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 45975 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 45914 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 45853 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 45792 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 45731 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //