Array 1 277206-276096 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBRS01000002.1 Salmonella enterica subsp. enterica strain NY_FSL P3-1558 NODE_2_length_393643_cov_42.473_ID_3731, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 277205 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 277144 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 277083 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 277022 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 276961 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 276900 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 276839 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 276778 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 276717 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 276656 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 276594 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 276491 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 276430 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 276369 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 276308 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 276247 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 276186 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 276125 29 96.6 0 A............................ | A [276098] ========== ====== ====== ====== ============================= ========================================================================== ================== 18 29 99.4 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGTGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 295563-293338 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBRS01000002.1 Salmonella enterica subsp. enterica strain NY_FSL P3-1558 NODE_2_length_393643_cov_42.473_ID_3731, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 295562 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 295501 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 295440 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 295379 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 295318 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 295257 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 295196 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 295135 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 295074 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 295013 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 294952 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 294891 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 294830 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 294769 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 294708 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 294647 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 294586 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 294525 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 294464 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 294403 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 294342 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 294281 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 294220 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 294159 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 294098 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 294037 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 293976 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 293914 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 293853 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 293792 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 293731 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 293670 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 293609 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 293548 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 293487 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 293426 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 293365 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 37 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //