Array 1 125222-126029 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPH010000002.1 Pseudomonas cichorii strain LCYJ25 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 125222 28 100.0 32 ............................ AACCCATTGTTGAGGGTCGCCGCCCCAGCACG 125282 28 100.0 32 ............................ TTGAACTCTGCGTCCACGGCGGCGCGCTCTTT 125342 28 100.0 32 ............................ ATCGTCCTTGTCATGTAAGCCGGAGGTGTTCG 125402 28 100.0 32 ............................ CCATCGCGGCGCTCTACCTCCCACTTACCTTC 125462 28 100.0 32 ............................ TATGCGCCGTGCAATGGTATCGGCCAAGGTAT 125522 28 100.0 32 ............................ TGGGGCTGGCGTCTGGACCAGGGGGAGCGACA 125582 28 100.0 32 ............................ ATTGCCCGCGAACGAGAATTTCGCCGCATCCA 125642 28 100.0 32 ............................ AGCGAGCAATGCAGCGGTGTAAGCAGGCGAAT 125702 28 100.0 32 ............................ ACTCCGGCCTTGTGATGTTGCGCACCAGAAAC 125762 28 100.0 32 ............................ ATCATGGCGTCAGACATAAAAACGCCCGCCTC 125822 28 100.0 32 ............................ CTTGCGAGGACAGGTTTTTGCGCTCCTGATGC 125882 28 96.4 31 ............G............... CTACGGGCGTTAAGACCCGGATAAATCGCAC 125941 28 89.3 31 ...........C.C.......C...... GATCACTTGAGCATTGAGCAAAGCACTGAGC C [125967] 126001 28 89.3 0 ........T......A........A... | A [126013] ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.2 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : AAGGTGGCCAGAGCATCAACCGCTTAAATGATGGGTTTCAGGGTAGTAGAGAGTGGGGGTGTTTGCTGCTGAGAGAGCCGACTGATTGGGTGGGATTTATCCGCGAGACGTCATTTCAGACGATGCATTTTTGAGAGCTGAGTGATTCATCCCGGGCACACACAACCTTGTGGGAGGGGCCTTGGCCGCGACATCCTTCAGACAAAATATGTCAGGAAATGGAGCTTTTCCAAGCCGTCATGTCGCAATTTCCGGTTTCTAGCGACATGTTATGAGGTCATGTCGCTGGCGACGACATATCAAAAAGTACGGCGCTGTCTTGCTGCGGGTGAGCACCTGTATACGGCGGACAGGAATGAACCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGACTTACAAAGCTCGATAAAAAAAGGGTTAAAACGGCTGTTGGCGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGCAGAGTGTCTA # Right flank : AAACAAAGCCCTTGTAGCTAGCTCACCTACAAGGGCTTCAATCCATTGCCAAAAGAACATCAAAACCAGGGAACAGTAGCCGTAGCACTCAACCCATAGCTATTGAAGGTCCCATCCTGGGCGCTGCTCTGTATCGGCTCATGCCGGATGAACAGCAGGAACGTCTGACCATTGGTACGGCTGCGCATCTGGACGAAGGGCAGGTTGCAGCGTTTTGCGGCGCTGTCGGGGATACGTTCGCGGGCTTGTTCCTCCGTTAGGCCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACCTGCACGCGGCTGACGCGCCGATGCTGTGCGTCAGTGGGGATCGGGCTCAGTTCGCCTACTCGCACATGGTCGCGCATGCCCGTCAGCCAGCTCTGGGCCATCAGGGCATCCAGCGCTTGCGCACTGCCATGCAAGCGCAGGAGGTTGCCCAGGCCGGTAGCCCTGTCGCTGATAGCGGGGAAGCTGAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 136041-134692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPH010000002.1 Pseudomonas cichorii strain LCYJ25 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 136040 28 100.0 32 ............................ GAAAAGGAAATCAGTTTGTGATTGCGGTCAAT 135980 28 100.0 32 ............................ GCCTTCCATCGCGACAACCTTCCCCGCCTTTG 135920 28 100.0 32 ............................ TATCCTGGAGATCCGTGGCTGGACTGGGTTAC 135860 28 100.0 32 ............................ CGGTTAGACAGGCCCAGCTAACGGAGTGGAAG 135800 28 100.0 32 ............................ AACCTGCGCGATGCCAACCTGAGCGATGCCGA 135740 28 100.0 32 ............................ AACCTGAGCGATGCCAACCTGCGCGGTGCCGA 135680 28 100.0 32 ............................ ATACGAGGATGTTCGGAACTGGATCTACCTGT 135620 28 100.0 32 ............................ AACCTGAGCGACGCCAACCTGAGCGACGCCGA 135560 28 100.0 32 ............................ CAAGACAATCTTCATTGGCTGCCGCCTGCCGA 135500 28 100.0 32 ............................ CGAACCTCGAAATTCGGACTGTGCCCGAATAC 135440 28 100.0 32 ............................ TTACCGGCTGATATGGCCGAACACGTCAAGTT 135380 28 100.0 32 ............................ TTCTCTCCCTGCTGCGCACTCCCCCCCTTACC 135320 28 100.0 33 ............................ GGGAGGAGGGTCAAATTTCTTTCCAGGGGTTGA 135259 28 100.0 32 ............................ ATGTTGTCGACGCTGGCGGTGGCCAGCTCGGC 135199 28 100.0 32 ............................ AGTGCCGGTAACTTGACTTGAACCGCATCCTG 135139 28 100.0 32 ............................ CACCCACGGCGGCACTTCCGGGTAAACCTCTC 135079 28 100.0 32 ............................ ACGTCAACATGACGCAACCGAGCCCCCTTCGG 135019 28 100.0 32 ............................ AACGCCGAGATCAATCAGGCCATTCGCGGCAC 134959 28 100.0 32 ............................ AAGTACACATCAGCCCAGCTCGACGACATGTT 134899 28 100.0 32 ............................ ATTCAAGGATCGCGGCTTTAATTCGGCCTGGC 134839 28 100.0 32 ............................ ATATCGCCATCTTCCCAGTAATAGAAATCCAC 134779 28 85.7 32 ...........CA..A......C..... TACGACCCGGTCATTAATGGTCATCTGCTCTC 134719 28 67.9 0 A..A.......AAC........C.C.CC | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.0 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CCCTCGAAATGCGCATGCAGCGTCTCGATACCGGTATCGCGGTCCTGAGCAAGATTGATCCAGTTGCTCTGAGTCATGGCAGGCTTATGGGCAAACAAGGGGATAGAGAAGCGTGTTATCGCGCATGGGGAATGGGAAGTCTAGAAGGTTTGTGCAGGGTGCCTTCAAGGCCTTTCGCGAATGAGTTGGCTTGTGTGGGAGCGACTTCAGTCGCGAAAGCAGTGCTTCAAGCGATGTAACTCTATCGGATGTACTCCCGTGGGAGGGGGCTTGCCCGCGACAATGCAAGGGACAATATCTACCGATGCGTACCCGTATCTACAGCGAGCAATAGACGCACAAAAACATTTTCCGGAATGCTGATTCTGACCCTCTTTTTTTTCACCCAATATGCGCCCCTTTAAAATCAATCACTTACATATCTGATGAAAAAAAGGGGTAAAACGGCTGCTGGTGCATATTTTTCTTTGAAAACGGAAGGTTATCGAGGAGAGTGTCTA # Right flank : CCCAATAACCCCATAACCAACTGATCTACATAAATTTAAATCCAAACCTGCAGAAGCACGCCTGCCCACAACAACCCTTCTGTAATCCACTCCCTACAAGAACCGCAGACTCATCTTTCTGACTCACGACCATCCCCAACCTCAAAAAACCTAAAGCACCGCCTTACGCTTTCGGCTATATACATTCCCTCTCCCCGGCCAAGTGCCATTACTGGTTCGATCATGGATGACATCAGTTCTTCGGATCTCAAGACGATCCTGCATTCAAAACGCGCGAATATTTATTATCTGCAGCATTGCCGGGTATTGGTGAATGGCGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACCGTGCTGCTGGGCACGGGGACTTCGGTCACTCAGGCGGCGATGCGTGAGCTGGCCAAGGCGGGTGTGCTGGTGGGCTTTTGCGGCGGTGGCGGCACGCCGTTGTTCAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //