Array 1 15949-16206 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AWTJ01000028.1 Streptococcus pyogenes GA41394 contig00029, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                           	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	==========================================	==============================	==================
     15949	    42	 100.0	    30	..........................................	AGTTTCGCCCTTGTCACCACGTGGACCCTG	
     16021	    42	 100.0	    30	..........................................	TGGCTCACCTTGGGTACCTGGTTCACCTTT	
     16093	    42	 100.0	    30	..........................................	TGGCTCACCTTGGGTACCTGGTTCACCTTT	
     16165	    42	  95.2	     0	......A..G................................	|                             	
==========	======	======	======	==========================================	==============================	==================
         4	    42	  98.8	    30	TGGACCTGCAGGGCCGGTCTCACCACGGTCACCTTTGGCACC	                              	       

# Left flank :   GTAGCAAAAGAGGATTAGTTGTTTTCTTGACGTTTTGCAACAGCTACAACTCCAGCCGTTGTCATGATAGCTACAGCAGCTGCTGTAAAGAATGGATTGGTTGTTTCGCCTGTTGCTGGCAATTGTCTGTGTGTGTCGTGAGCTGCCGGTGTTTTTGCGAGCTGATTACCACCTTTTGTTTGTGGTTTGTTTAGACCTCTATTAGAAGGGTTTTGAGGGGCAGGTGTCACGTCTTTCGAGTGGTCAGGAATCTGAGGGGTTTTTGGAGTATGTGGTGCGGTATCTGGTTTTTGAGGGACCTCTGGTGTTTTAGGAGTCGGTTTACCTGGTTGACCGTCTTTGCCATCTTGGCCATCCTTGCCGTCTTTACCTGGGAGACCATCTTTACCGTTTTGGCCGTCCTTGCCAGCTGGACCTACTGGACCACGGTCACCATCTTTTCCAGCGGGACCTGGTTCGCCTTTGTCACCAGTTTCGCCCTTGTCACCACGTGGACCCTG
# Right flank :  TGGCTCACCTTGGGTACCTGGTTCACCTTTTGGACCAGCGGGGCCTTGGGCACCATCTTGACCATCAAAAAGCTTATTTTGCATTCCCTCAAATAATTTTTCTCTCCATTGGTCTTCTAATCGATCTCTTTCTTCAAGATATTTTAGTATTTTTTTAACCGTACTTTCCTCCACATCACCATTAGAACTAGGTAAAGTTCCACTTTTCATCTGTTCAAGATTATTATGGAGTTCAGTCATTAAAGTATTCTTTTTTTTCGCTAACTCTAGTCGTTGCTGATCATCCGCCTTAACTGCACTCGCACCTCCAAAGGCCAACAAAAGAGCAGCCGCTGACGTTAAGCCATAGCGACAAAGAAGGCTATGTTTTGTTTTGTTTTGTTTTG

# Questionable array : NO	 Score: 2.60
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TGGACCTGCAGGGCCGGTCTCACCACGGTCACCTTTGGCACC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-7.20,-4.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.78,0.37   Confidence: MEDIUM] 

# Array family : NA
//