Array 1 31-1232 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHPN01000055.1 Empedobacter falsenii strain WF_350 NODE_55_length_13887_cov_82.046054, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 31 47 100.0 30 ............................................... TCGGCTATTGTTTTGCCTAACCCATTTTTA 108 47 100.0 30 ............................................... CGATTTAACTGAAGTTAAAGAAACAGAAGT 185 47 100.0 30 ............................................... GTTTAACTTTAAAGATGATGTGCAAGACTT 262 47 100.0 30 ............................................... GCAACTAAAAACTTTTCCTTTGTCTTTAGT 339 47 100.0 30 ............................................... ATTTACTAAAAAAATCAAAGAAGAAGTACA 416 47 100.0 30 ............................................... TAATTTCCCGATTCCAGTTAACGTACCACT 493 47 100.0 30 ............................................... ATTGTGTTTTCAGATATAAAACTTATTTTA 570 47 100.0 30 ............................................... AAGTTTTAAAAACCAATGTATTGATTTGGG 647 47 100.0 30 ............................................... ATTATGATACCATTTGTTTAATTCCATAAT 724 47 100.0 30 ............................................... TTCACGTTCAGCTTCAATATTGTAAGTCGT 801 47 100.0 30 ............................................... CTATTTCTTTGTAGTTCATAGTTCTTTAAT 878 47 100.0 30 ............................................... GTACCACTATAAGTTGCACTACCATTAATA 955 47 100.0 30 ............................................... TTTTAAATAATTCCATTCGTGTAAATCAAT 1032 47 100.0 30 ............................................... ATTTTGGCATCAGACGCATTTTCGTAACGT 1109 47 100.0 30 ............................................... GTTGATGCGTCGCGATTGGCGTATGTTATC 1186 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 16 47 100.0 30 GTTGTGAGTTCCTTTCAATTTGGTATATTTATCAAAGTAATTACAAC # Left flank : TTTATTATTTAGTGTTTCCACCATTGACACG # Right flank : CCTCATTTTTATTATCCTTTGTTTTAAAGGGTTTGAGAAGAAAAGTAGAAATGAGAAAAAAAGTAAAAACCGATAGAATACATATTATTCTATCGGTTTTTTTATTTCTAAAACAATTCTAATTGTTGGGGTCCTGTGGGTAAATTAGTTTCTTTTTTTGAAAAGAAGATCTCCATTTGTCCAAATTGTTTATCGGTAATACAAATAATTCCTACTTTCCCATATTCAGGTAATTTAGATTTGACGCGTTTTATATGTACCTCAGCATTCTCTTTACTTGGGCAATGCCGCAAATAAATCGAAAACTGAAACATTGCAAAACCATCGTCAAGCAATTCTTTTCGAAATCTTGTTGCCTGACTTCGTTGTTTCTTTGTTTCGGTTGGTAAATCGAATAAAACTAAAACCCACATAATTCGATATGCATTATAACGACTAAAACTCATACCATTTCAGGAAAACGAATCATACGCTGCTCCCCTGTCATACACTTATACAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAGTTCCTTTCAATTTGGTATATTTATCAAAGTAATTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: F [matched GTTGTGAGTTCCTTTCAATTTGGTATATTTATCAAAGTAATTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,4.77 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 741-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHPN01000093.1 Empedobacter falsenii strain WF_350 NODE_93_length_740_cov_59.083210, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 740 47 100.0 30 ............................................... TTTATTATTTAGTGTTTCCACCATTGACAC 663 47 100.0 30 ............................................... GAATAATCAAAACAATACTTATGAAATCTA 586 47 100.0 30 ............................................... GAAGTCAAAAGGGGATGATGTCCATCCAAA 509 47 100.0 30 ............................................... TATGCATTGTTTTTTCGTCTCTGTGTACCG 432 47 100.0 30 ............................................... GAATAATCAAAACAATACTTATGAAATCTA 355 47 100.0 30 ............................................... GAATAATCAAAACAATACTTATGAAATCTA 278 47 100.0 30 ............................................... GTCTCAAATAAAATAGATCCACCATCTACA 201 47 100.0 30 ............................................... ATACCCTTTATGTTGTTTATATTCGCCTTT 124 47 100.0 30 ............................................... TTTATTATTTAGTGTTTCCACCATTGACAC 47 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 10 47 100.0 30 GTTGTGAGTTCCTTTCAATTTGGTATATTTATCAAAGTAATTACAAC # Left flank : | # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAGTTCCTTTCAATTTGGTATATTTATCAAAGTAATTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: R [matched GTTGTGAGTTCCTTTCAATTTGGTATATTTATCAAAGTAATTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.5,4.87 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 5691-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHPN01000048.1 Empedobacter falsenii strain WF_350 NODE_48_length_16972_cov_68.756970, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 5690 47 74.5 30 C.AT.A...........C...T...AT....CGT.....G....... AGTAAACAAAGAACTACCATCAGCCCCTGG A [5668] 5612 47 83.0 30 .................C...T...AT....CGT.....G....... TTGAGTATATAATCGGCCTTGCGTCATTGT A [5590] 5534 47 83.0 30 .................C...T...AT....CGT.....G....... AGGAATATTTTACACCTACGGAAGCGGTTA A [5512] 5456 47 100.0 30 ............................................... AACAAGTATGTTAACGTTAACGCTTCCGAT 5379 47 100.0 30 ............................................... GTATAAATTTTCTAATGATATTGACAAATA 5302 47 100.0 30 ............................................... CATAGCCTTTAGTCCAATTACCATAACTAA 5225 47 100.0 30 ............................................... ATTTATTGTTAGATAGTAATCCAAGCCCAG 5148 47 100.0 30 ............................................... TTGGTTTAACTACGATTTCACGGTCGAAGG 5071 47 100.0 30 ............................................... ACCATAAAAAAACTTTTTAACGAGTATTTA 4994 47 100.0 30 ............................................... TTTACTTTAGGTGCGTATTTCCCTCTTATT 4917 47 100.0 30 ............................................... AAACGTTTGTTAAATGTCCTGATATTGAGT 4840 47 100.0 30 ............................................... CAAATTTTTAAAGTTAGATACTTTATTCCA 4763 47 100.0 30 ............................................... GTTGGTTCAAATTACGTGTGCAAGTCGCCT 4686 47 100.0 30 ............................................... ATTAAAGAAAATAAAAACATGGCAAGATGC 4609 47 100.0 30 ............................................... TCAAGGAGTTCTCAGAACTGGTTGATGTTC 4532 47 100.0 30 ............................................... TGACCAGTATAAAATTAAATACCTTACTAA 4455 47 100.0 30 ............................................... TCATATACAAAAATTAAAACGAGGTTACTA 4378 47 100.0 30 ............................................... AACATATTCGCATATACAAGAAGAGATGCA 4301 47 100.0 30 ............................................... TCTCGAAAAAGAATCCTCCATTGTTTTGGC 4224 47 100.0 30 ............................................... ATCTTTGGATAAAGAAATATCCGATCGAAA 4147 47 100.0 30 ............................................... TTTTGCTCAATCAATCGGTCGCCTTGAATA 4070 47 100.0 30 ............................................... TGCTGAGTTAGCGAACGTTATATTTTCAAA 3993 47 100.0 30 ............................................... ATCAATTGATGACAGACTTAGCAACGATAG 3916 47 100.0 30 ............................................... AACATTAAGTGAAATAAAATTATCTATTAC 3839 47 100.0 30 ............................................... ATACAAATTCCATTACGTCTTCAGTTTCGT 3762 47 100.0 30 ............................................... CTCTTAGATTACCTGAACAAGTCGCTTTTT 3685 47 100.0 30 ............................................... TCAGATGGCTTAATTAAACCGTCTATTTCT 3608 47 100.0 30 ............................................... ATATTTGGCTCACAGGTTCAAGAACCCTAC 3531 47 100.0 30 ............................................... ACAAGCAAAGACAAACAAATATGCCAAGAA 3454 47 100.0 30 ............................................... CGGTACGCATCTATACTTATATATCAAGTA 3377 47 100.0 30 ............................................... CGCAGGAAAACAACCAGCATGGATTAACTA 3300 47 100.0 30 ............................................... TAAGCTTAGCAATGAAAAGTAACGCTTATG 3223 47 100.0 30 ............................................... GTAGAAAGAATTGACTTTGCAATGGCTGGA 3146 47 100.0 30 ............................................... CGAAAGATTATCTTTAATAAAAGAAATTGA 3069 47 100.0 30 ............................................... GCAGCACAAGTATTCAACCAACTAAAATCT 2992 47 87.2 19 ....................................CG.....TCGG AACAAGAAAAAGAAGTGTT Deletion [2927] 2926 47 100.0 30 ............................................... TTGCACCAGTTTACAAAATCATTAGAAGAC 2849 47 100.0 30 ............................................... TAAGTCTAAATTTATGAAGTACGTTAATAT 2772 47 100.0 30 ............................................... TGTAAAGGCTGGTAAAATCGATGCGACTAA 2695 47 100.0 30 ............................................... TTTAGGAAATTTTACAACAATGGAACTTCA 2618 47 100.0 30 ............................................... CTTCACTATCAACTAATGATAATACAGTTA 2541 47 100.0 30 ............................................... CTTCTTCAAAAAATTTAGAGTGAGGTGGTT 2464 47 100.0 30 ............................................... ATTATTTCAAGAGGTTACAAATACTATTTC 2387 47 100.0 30 ............................................... ATAACACAAGAACAGATAAATATGTAAGAA 2310 47 100.0 30 ............................................... CTTATGGAAAAAATCAGTTAATGCACTTGC 2233 47 100.0 30 ............................................... ATTGTGTTTTCAGATATAAAACTTATTTTA 2156 47 100.0 30 ............................................... TAGAAACGATTTATTGTGCTATGCTTGTCG 2079 47 100.0 30 ............................................... AAATAATATGAAACAATACGATTTACCAAC 2002 47 100.0 30 ............................................... ACCATAGAATTGATTACCTCTTAACAGTCT 1925 47 100.0 30 ............................................... AAATCAACAATCGGTATAGATTCTGGGTCA 1848 47 100.0 30 ............................................... TTTCGTAACGTTTAAGCAACTCTTGTCGAC 1771 47 100.0 30 ............................................... TTGGTTTATAACCTTCTTTTATTAATTCTT 1694 47 100.0 30 ............................................... AAAGCAAAAGAAAGTTTGTTTCCTAACGCA 1617 47 100.0 30 ............................................... CTTATTGGACTAAGTTAGGTTTTATTTTTC 1540 47 100.0 30 ............................................... GTAACTAAAAATTATAATTATCAACCTATA 1463 47 100.0 30 ............................................... TGGTTACTGTTATAAGATCAATAAAAAAGA 1386 47 100.0 30 ............................................... TTGCAACAACTATTGCTGATGTCTACAAAG 1309 47 100.0 30 ............................................... ATTTGGAAATAAAGATTTTGTTTTCTTTTT 1232 47 100.0 30 ............................................... TAATTGCAAAAGAAGGTGATGAAGAAAGAG 1155 47 100.0 30 ............................................... AATACAACTTCTAAAACTTCTGACAAAGTT 1078 47 100.0 30 ............................................... TATAAATGATATAAAAAATCATTTAAATTA 1001 47 100.0 30 ............................................... AAATAATGATTTTTTAAGTTATTATTTTCT 924 47 100.0 30 ............................................... AGCTCCTGATTGTTTTTGTTGCAATACACC 847 47 100.0 30 ............................................... TAACAAAAGTAGACATAAAGCATACACAAT 770 47 100.0 30 ............................................... ATTCCAACAAAATAAATAACGCCAAACAAA 693 47 100.0 30 ............................................... TTTTGCAATAGTTAAACCTCCTGTTCCTGA 616 47 100.0 30 ............................................... AATTTTATAAATACGAATTTCGTCAATGCG 539 47 100.0 30 ............................................... GAAATTATGAAATATACTGCTAAACAAATC 462 47 100.0 30 ............................................... TTGCAACTATTGCAGCGCAACCATTGCCTG 385 47 100.0 30 ............................................... AAATCATTGGAAAAATAGAACGCGAAATAT 308 47 100.0 30 ............................................... TTTACTTCGTTCGCTCGACTTATCTTTTTC 231 47 100.0 30 ............................................... ATTAAAGAATTAACATTCGATGAAGTTATT 154 47 100.0 30 ............................................... ATAAGCTATTGTACCTATTTAAAGGAGTTA 77 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 74 47 99.0 30 GTTGTGAGTTCCTTTCAATTTGGTATATTTATCAAAGTAATTACAAC # Left flank : GAGAACATTTTTAGTAGGGAGGTTTACAGCCAAGTCTTTTTTCGTTAGTTTTTTTGACGAAAAAAAGTGACATTAAAAAAAGAAATTCGAATAATTAAAACAGAAAATCAATAAAAAAAATTAACACCCCCTCCCTATCCCTACTTCCTCTTATGATTTGTTTTATTTAATTAAAATATGTATCTTACTGAAATTAAGTAAATTAAAACGTATGCAAAACACTTACTTTTTTACACAAAAAGAGAAGGATAGCAACGAGTTAAAACTTCTTTTAGTAGAATTAATTACGAATATACAACCCACGGACAAAGATCACGGATTCTACGACAGTGCAGATGTGCAAAGGCTACTTAACGTTAGTGACAAAACGTTGTATCGCATGAGGAGAAACAAGACGATTCCTTGTTTTAAGCTCGGTAAAAAGTACTTTTACCCAAAACATTTCTTTAACAAAAAAGCTCTTGAATAAGAGCCTTTTTCGTGGAATTTATTATTAAAAA # Right flank : CTTTATTATTTAGTGTTTCCACCATTGACAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAGTTCCTTTCAATTTGGTATATTTATCAAAGTAATTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: R [matched GTTGTGAGTTCCTTTCAATTTGGTATATTTATCAAAGTAATTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.91,5.14 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], //