Array 1 10330-7138 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZVL01000038.1 Pseudomonas sp. URIL14HWK12:I6 H043DRAFT_scaffold00036.36_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 10329 30 100.0 36 .............................. TGTAAATTTCAATGGTTATTTTTGCCCGGAGATGCA 10263 30 100.0 35 .............................. GTTGGTTCGATTGTGGTGGATAGGGCTTCTTTCGC 10198 30 100.0 38 .............................. AAGTGGAACCCAGTCGAAGGTTTTCCCGACCTGGCCGG 10130 30 100.0 39 .............................. TCATTGCTGAAGGCATGGAGCCGGGGGACAAAATTACGG 10061 30 100.0 36 .............................. ATCGAAGTTATTCGCGCGTCATTTTCCCGCCGCCGG 9995 30 100.0 37 .............................. ATGCCGATGGGAACACGCTCTACAGCAAATCCTACTA 9928 30 100.0 37 .............................. CGAATTCTGCCTGTTGTACAAAGCAGGTCAAGACCCG 9861 30 100.0 35 .............................. ATGTACACCCAGATGGGGAGCGGGCTCGGCATGAG 9796 30 100.0 36 .............................. GACGTGGGAAATCCAGAACGAAACGTGCGAAGAAGG 9730 30 100.0 36 .............................. TACAGGTATCAGCGGAGGACATCAGCGGAAACGAAA 9664 30 100.0 37 .............................. TACAACAACGTCCGATCAATTCCTTGCTGGTATGCAA 9597 30 100.0 35 .............................. TCTTTTATTCCTGTAAATTGCCCAACGGTTTTGGG 9532 30 100.0 39 .............................. TCTTTCAACCCGGTTACAAGTGCCTTGGACAGTCCCATG 9463 30 100.0 39 .............................. TGAGGGGGATATTCTGGATGTGGATGGAACGCCTTGGCT 9394 30 100.0 38 .............................. TCACGACTTGCGCGGCCCATAGTCGTCCAGCACCTTTT 9326 30 100.0 38 .............................. CAGTACGCCGTCAAGAAGAAGGAAGGAAATATAATAAC 9258 30 100.0 39 .............................. TATCCCGCGTGATCCGGCGCGGTTTCTGCACAGAAAGGA 9189 30 100.0 35 .............................. TCGTCTTCCCGGAATTCTTTGATGCCGTAAGTCAG 9124 30 100.0 36 .............................. TCCCTGGAGCCCCTGCGGATTTGAACTGGTTAGAGT 9058 30 100.0 38 .............................. CACCCCCCTCGTCTCCGGCGGCTTGCAGGGCGATTTTT 8990 30 100.0 38 .............................. TCAGGAGTATTGCAATCGTTACTTGGAGCCAGATGATG 8922 30 100.0 39 .............................. ATTTGATAAACTCCAACACCGCTTTCTTGCTCAGGTATT 8853 30 100.0 36 .............................. TGGAGAATTGGAATATGTCGTTGCCGCGAACACCGA 8787 30 100.0 36 .............................. CAGCGTCTGCATATGGTATCCACAGAGGGCCGTACA 8721 30 100.0 39 .............................. TATTTTTATAACCACATTCACTACAAATTTGACTTGAAG 8652 30 100.0 39 .............................. ATCTGTTCTTCTGTAAATCCGGCGTCAAGCAGAACCTTC 8583 30 100.0 37 .............................. TACCATGCGCTTTCGAATTTATGAGGATTCGCTTTAG 8516 30 100.0 40 .............................. TTCACGTCGAAGTAGTCGTTCAGCAGAAGATCGATCGCCG 8446 30 100.0 38 .............................. GCAACCTGTCGGCACCGAACATCAAATACGGAGCGACC 8378 30 100.0 39 .............................. ACGGCATGCGCACAGTAGACGTTTCCTGTCGAGTCTACC 8309 30 100.0 41 .............................. CGAAAATCCGGCCCCGCGTCCGGGAAACGTGGGGCAAACCG 8238 30 100.0 37 .............................. TCGATGCTGCCTTTGCTGTCGCAAACCCCGTGCTTGG 8171 30 100.0 39 .............................. GAACTCGTCAAACGTAAGATGGAAGAAGGCGGGGTCCTG 8102 30 100.0 38 .............................. AAAGAGTGCTTTCAGGCGTTGCATTTCAGACCACCCCC 8034 30 96.7 36 .............A................ GACCAGACCTCATTCCCGGAACTGTCCAGCTTTCGG 7968 30 96.7 40 .............A................ GACCAGATTTCGTTCCCGGAACTGTCCAGCTTGCGAATGG 7898 30 100.0 37 .............................. GCGTATTTCGGACTTCGAGCGCCGAAAAGTGTATCGG 7831 30 100.0 35 .............................. TTCGCCGTCCAGCATGAGCATATAGGCTGCCAATG 7766 30 100.0 34 .............................. ATCGCGTTTCCTGTGCAGTACGCGGCGCCGCCGG 7702 30 96.7 35 .........A.................... GTCCAAAAGGAATACCATTTGAAGAAATTGAATCA 7637 30 100.0 38 .............................. CTGCGTCCGGCCCGCGTAGTTGAACGCCTGGCCGACGA 7569 30 100.0 38 .............................. AAGGCCACGGGGGAAGTCGGGCGGGTAAAGCTAACCTG 7501 30 100.0 36 .............................. CCGTAAACGAAATAGTCGATGGTAGGGATTCGGATG 7435 30 100.0 37 .............................. TCTGATGACATCGTGGAAATCCGACTGATCGAAGAAC 7368 30 100.0 36 .............................. TAAGGTCGTAAAGACGGGCTGGATGCGGTCGAACAC 7302 30 100.0 37 .............................. TGGTCGCGGAGTACCGCGGTGCCCACGGAGAAGACGG 7235 30 96.7 38 ................A............. ATAGTCGTTGGTCGTCGCCATTACGTTCCCTCCAGTAT 7167 30 96.7 0 ............................T. | ========== ====== ====== ====== ============================== ========================================= ================== 48 30 99.7 37 GTTTGGATCGTACCTATGAGGAATTGAAAC # Left flank : GAGGCGCTATGGTAATGATATTGTGCAGGCGGGAGGGCATGTTCGTTGTTTGTCGTTCTGGTCTATGATGTCGGGGAAAAAAGGGTGGCCAAGGCGTTGAAAACGTGCCGAAAATATCTGAACTGGGTGCAAAATTCGGTCTTTGAAGGTGAAATCAGCGAGGTCAATCTGAAAAAACTGAAAGCGGAAATGAAAAGAATCATGAATTTGTCAGAGGATTCTGTGATCATTTACACATGGCGAACGCAGAGATACAGCAGCAGGGAAATCCTCGGAGTCGAGAAGGGGCCGATTGATTTGTTTGTTTAGGTTGATTGAGGTCTGGTTTTGGAATGTCGTCGACCCCCGATCGTGCAAAAACCCCCGGGGGTCGACGACAAGTCGACTGAGCCGGAATGGTATGTTATCACAAGATTTTTGTGATATGATGAAAAAGAAGCAAGCTCACAGAATATGCGCAGTTGTTTGATCACAGGGTTGTAATGACGGGGATTTTTGGG # Right flank : GACCTGACCTGACGGTTACCACCGGGGATTGCAACGAATTTGAGGGGAACCAGCGGCGGTAAGCCGATGTCGATTCGGAGAGGCACTAAAGATGGCAGCAAGTGGGATGGTTTGAAAGTGGACTATTCCCGCTTTAACTTTGATTGCGTTACTTTGAGGAGAGCGAGAAGTGTGCCTGAGGGTGACTGCAGGGTGGCCGTCACTTCGGGGGCTTCCACGCCGACGCTGATCACAAAGGAAGTGATTGGCTATTAGGAACAGTTCGAACCGGAAAATCCCGAAACATGGCCGATCCGTCGAACGGTCAATCTGGACAGATTACTTCCCGGAAAAAAAGCATAGAAATAGCGTGGCATCAAAAAGAAGCAGAGGGCTGTCCCGCAAAGTTATCAAAACCAGAAGGGACAGCCCGAATTGTTTGTGGCGCCGGTGTGCCGTATGGATGCCGCTGGCGCGCGGTGATTTGCCTTAAAGTGCAGCTTGCTTCTCAGGGGAATTCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3965-3511 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZVL01000034.1 Pseudomonas sp. URIL14HWK12:I6 H043DRAFT_scaffold00032.32_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3964 28 100.0 33 ............................ CAGGTGCGCCCCTACGCGGAGGTGATCAAGAAG 3903 28 100.0 33 ............................ CCAGAATCAGAAAACGCAGCATCTGAGGCGATG 3842 28 100.0 33 ............................ CACGACCGGTGAGCACGTCGAGGATCCGAAGCG 3781 28 100.0 33 ............................ TCAAGAAGGTGTTGCCATAATGAAACCGCGATA 3720 28 100.0 33 ............................ CTGTCCACCTTCTGCGGCCGAAAAAGACGGCGG 3659 28 100.0 33 ............................ CTTTGCGCTGATCTTTACGGCCCGCGTGCTTTT 3598 28 100.0 33 ............................ TTACACGCATGGAGGCGTAGCCGCCCGGCGGGA 3537 26 92.9 0 ..................--........ | T [3535] ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.1 33 GGGTCATCCCTGCGCGCGCGGGAGTCGG # Left flank : ACATGGCTTGTGCGCAACTGTGACGTGATCGTTGTAGAATCGCTCAGTATCAAAGGAATGCTCAGAAGCGGTCGTTTTTCGCGTCACATTGCCGATGCGGCATGGGGAACTTTTTTCCAGATGCTCCAGTACAAGTGTGAGCGGTATGGGCGCACCCTGCTCAGGGTAGAGCGTTCTTATCCGAGCAGCAAGAAGTGCAGCCGTTGCGGTAAGATTCGAAAGGCATTGTCACTATCGGAACGCACGTATCGGTGTGATCAGTGCGGACTGAAGATAGATCGTGACGAGAACGCTGCGTTGAACTTGATGAAACTCGGGTTGGCTCACCTTACGAGCCCTACCGCCAGACTGGCGGGAAGTGACGCCGGAGGAGATACGATCGCGGGTGGTGCCGCCGCCTGCACGTAGACGGTTGCGGCATTGGAGCGATCGGCCCCGGAATCCGTGCTTTGCAGGGAGAGCCCCGCGCGCCGACCGCTGGTGTGCACACCTTGCGCAGC # Right flank : TATAGCCCGCCCCGATCAGCTCCGGATGGCCATCACCGTCTAGGTCGCCGGTGGTGATGCCCAGGTTCGTCGGGCCCTCCAGCAGCGGAAAGATGAGCTGATCGGTAGTAATCTCCAGGGGGTTTTCGCCACTTTCGTAGTTCAGGACGGCCAGTTGCCCGGTGTAGAAATTCGGATAGAACACCTCATCGTCCCCGTCGCCATTGATGTCCACCACCACGCCGCCAAAGAGCGCGACGTGGTCGCCACTGGAAGCGCGCACATACACGTTCTGTGCGTTCGCGTCCGGAAACTGATACTGATCCGGGCCGAGCACGTCTCCGTTTGTGAAGTTAAAGTTATTCCACGAGTGCATCGACAGTTCATACGTACCGTCGCCGTCCAGATCGGCGGGTAGAATTGCATAGGGGCTGCCACCGCCACGATTGACCGGATCAAAACCCTCTGACGCGCGGCTGCTGATGCGCGCTTCCTCGACCCATACTTCAAAGCCACTTCCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTCATCCCTGCGCGCGCGGGAGTCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 1301-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZVL01000050.1 Pseudomonas sp. URIL14HWK12:I6 H043DRAFT_scaffold00048.48_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 1300 30 100.0 35 .............................. TGAAGCACGCAAAACTCCTTCTGTTGCTGGCCGCC 1235 30 100.0 37 .............................. TTGACAATGCCGATGTGGGCGCGCTGGCCTACATCAG 1168 30 100.0 36 .............................. GCAGGAACACCATGCTGCGGAGTGAGCGGATATTGG 1102 30 100.0 38 .............................. ACAGGAAGGCAAGCTGACTGTCGCGATCCTGCAGGCCT 1034 30 100.0 37 .............................. GGAGCACAGTTTTGTGCAAGCACCCGGCATATACTTC 967 30 100.0 39 .............................. GGCGTACCGCTGTCGCCGATCCTGTTGCGTGAGCGCATC 898 30 100.0 36 .............................. TGTACGACAAACGGAACTTGGCCCTCACGGCGAGCG 832 30 100.0 37 .............................. GACGGCGGCAAAGAAAGAATGACATTGCCGCCCTCAT 765 30 100.0 36 .............................. GGGTAGAGGCGCTCGTCCTCGTCCAGGACATAGACG 699 30 100.0 36 .............................. GTACAGATATTTCAGAGTCCACGATCCACAGATAAT 633 30 100.0 36 .............................. ATTGAAGAGCATCGGCGAGATGCCGTACGTGTCGGC 567 30 100.0 43 .............................. GCACGTAAGAGGCATGAGAAAAGGAAGTATAACCTTCAGGCCA 494 30 100.0 37 .............................. CGTGTATGCCTACGAGGAGCTGAACTCGTACTGGCAG 427 30 100.0 35 .............................. CTCCGAAAGAAGTTACTTCCTCAGTACAAAGAGCA 362 30 100.0 37 .............................. CTGGCCCTCGATCTGTACGCTTGGCTTTCGTATCGGG 295 30 100.0 37 .............................. AATAGCTGGTACGGGGAACTGAACTTGGCGAGGATGC 228 30 100.0 38 .............................. TACAGCTCCGACTGCAGCACGGCCGACAACCGCGCCCG 160 30 100.0 35 .............................. CTTGGAAAAAGTCTCGGTGGGTGATCGGCGCGTAA 95 30 100.0 38 .............................. CCTGAAAGCGCAAGGCCAGCTTCGCTACTGGCGCAACA 27 27 90.0 0 ...........................--- | ========== ====== ====== ====== ============================== =========================================== ================== 20 30 99.5 37 GTTTTAATCGCACCTTTTTGGTATTGAAAT # Left flank : GCTGCAGGCGCTGAAACTGCGCTTCGGTCAACTCGCCCTCGAAGACGGAGCGCTGCACCCAGGTCAGATAGCGCCGGAAGAGCTTAAGCATTTTGGCGACGCGCCGCACGTTGACATCGTAAACGGCAATGTAGTACGGCATCGTAACCTCCTGTAATTACGTGAGAAGTGCCCTGACTGGCGTCGTCGACCCCAAGATAACGAACTGAATTCGGCAACGCAAATGATAGGTAAAAGAAAATCTGTTGTTTTATTTCTTTTATTTTTAGCAGTTTAATAAAAGTTGTCGGACCCCCGGGGTTTCAGGGGTAACCGGAGGTCGACGACTCCGGGGACTTGACATTCCGGATCAAATCGCTTATAATACCCTCCAGAAGCCGGTTCTGCTCTTTGAAAGGCCG # Right flank : A # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGCACCTTTTTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.40,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 1630-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZVL01000051.1 Pseudomonas sp. URIL14HWK12:I6 H043DRAFT_scaffold00049.49_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1629 28 93.3 36 --............................ GCGCGTAATGCCGGGCTGGGTGTACATGTCTCCCGA 1565 30 100.0 37 .............................. TTCGCCTTCCGTATGCCGCACCAGACAACGGCTTGCG 1498 30 100.0 37 .............................. TGCAGCGCCTCTACGGCTGGTCGTGGCGCAAAGCGCG 1431 30 100.0 37 .............................. ACGTCGCCGCCATCCTGGCCGCCTACCGGACGATCAA 1364 30 100.0 37 .............................. GGCGAAAACTATCGTCATCTGGGGTGGCGCTTCCCGC 1297 30 100.0 37 .............................. TTACGTTCAACGTCACGCGAAAATCCACGGTCTTCCA 1230 30 100.0 36 .............................. AATCATGGCGTTGGATTACGCGCAGCGCGTCGTCGC 1164 30 100.0 38 .............................. CTGGACCGAGACGCCGACCGACCAGCGATTGAAGGCCG 1096 30 100.0 38 .............................. GTGACGGGCGCCATCGAATGGCTTGCCCAGGATGGCGT 1028 30 100.0 35 .............................. ACCGCCCGCGCGTGGCGATCAGGTGCTCGGCCTCC 963 30 100.0 37 .............................. CGAAAAATACGATAGCTTTCATGATGCCCTCCTTCGG 896 30 100.0 34 .............................. ATTGGATTTTGTCGGCCAGCGGTCCTTCGGTAGA 832 30 100.0 36 .............................. GCCAAAGCCCAAGGTCGACTGTCTAAAATCGCAGAG 766 30 100.0 38 .............................. GGCAGAGACGATGAAAAAGGCCGTGGACTACGAGTTCA 698 30 100.0 35 .............................. GAAGTGACCGAGAGCCGGATCGTCACCACTCTCAA 633 30 100.0 38 .............................. ATCTTCGATCTTATCGACGAGACGGCGCCGGTGAACTG 565 30 100.0 37 .............................. CTCTGCGGCTGGTAGGGGACAGGCAGCGCCACACGCT 498 30 100.0 35 .............................. ATCTGAAAAGCACGGGCAATCTGCTGGTCGACGTA 433 30 100.0 38 .............................. TCGGAACGCGGGCGTAATCGACCACCTCAGCCCCGACC 365 30 100.0 36 .............................. CGAAGCGGTAGCCGCGCCCGCTGGCGATCACCTCGG 299 30 100.0 35 .............................. TATGTTGGCCTCCGACTGGCCCACGAGCGACCCTT 234 30 100.0 35 .............................. AGGTCGCGAACAAGCTCTTGCGCAATGATGGTCGC 169 30 100.0 37 .............................. AGCTGCTTTGCAGCAGCTAGGACGATGGACGACACAA 102 30 100.0 36 .............................. ATCAGGTGGAGGATTCGATCGAGGGGTGGTGCTCGG 36 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 25 30 99.7 36 GTTTTAATCGCACCTTTTTGGTATTGAAAT # Left flank : | # Right flank : TTGATCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGCACCTTTTTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.40,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [5.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //