Array 1 108876-107870 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYO01000002.1 Salmonella enterica subsp. enterica serovar Virchow strain BCW_2818 NODE_2_length_374794_cov_1.46541, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108875 29 100.0 32 ............................. CCTGGCAAATTATTTCCTGGATACTCGATATC 108814 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 108753 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 108692 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 108631 29 96.6 32 .............T............... CCATTCACGCCATACGCCGCCGTCACATAGCG 108570 29 96.6 32 .............T............... AGCGCGATCGTTCCGTCGTTTCGTGCGACGAA 108509 29 96.6 32 .............T............... TCCCCGAGCTTAGTTAGGTTTCGCTGAACGTG 108448 29 96.6 32 .............T............... TTGGCAGCGTTAACAATCCAACCCCTGAGAAC 108387 29 100.0 32 ............................. GCTTATCTGGAAAACCAATACGGATACGTAGG 108326 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 108265 29 96.6 32 .............T............... TCGGCAGCTACTTCAGTGTTAGGCGGCATCCA 108204 29 96.6 32 .............T............... CCACGGCGCAGGAAATCTCCTTTGTAACAGGG 108143 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 108082 29 100.0 32 ............................. GTGATCGAGTATTGCTCGTTGTCGGCGTGGGC 108021 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 107960 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 107899 29 96.6 0 A............................ | A [107872] ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126076-125133 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYO01000002.1 Salmonella enterica subsp. enterica serovar Virchow strain BCW_2818 NODE_2_length_374794_cov_1.46541, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126075 29 100.0 32 ............................. AGCATGTTGGCCGCAACAGCGATTTGCTCTAC 126014 29 100.0 32 ............................. ATCTCAAGAGAAAGAGAAAAGGCTCTAAGGCA 125953 29 100.0 32 ............................. GGAGAAAATAAAACGCCGCTTATCGCGTTCGC 125892 29 100.0 32 ............................. ATAATTCCTGTAAATGACCAATTCAGAGATAT 125831 29 100.0 32 ............................. AGAGCTGATCGCCACGGCGTTTAAAACTGCGA 125770 29 100.0 32 ............................. TGATTGCCACACTCTGGACATTCAGCTTGATA 125709 29 100.0 32 ............................. GCCTACGATTTAACAGGCTGGACAATTACGAC 125648 29 100.0 32 ............................. TAACCAAAGGTTACTTTATTATCTCTCGCATA 125587 29 100.0 32 ............................. ATAATTGGTAGCACCGGTACGGGGAAATCAAC 125526 29 100.0 32 ............................. CGAGATTGGCCAACGGCTCGATTACGACTTTA 125465 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 125404 29 100.0 32 ............................. CCTGAGGAGATATTCACCTTCCTGCATTTCAT 125343 29 100.0 32 ............................. CGGGAGTACGGCAGCGCTGGCGGGCGTGATCG 125282 29 96.6 32 ............T................ ATTGGTGAGGGGATTATTGAGCGGCGGTCAAC 125221 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 125160 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCTGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //