Array 1 5640-7742 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOS01000058.1 Salmonella enterica strain NGUA-20_S8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5640 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 5701 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 5762 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 5823 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 5885 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 5946 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 6007 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 6068 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 6129 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 6190 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 6251 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 6312 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 6373 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 6434 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 6495 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 6556 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 6617 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 6678 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 6739 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 6800 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 6861 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 6922 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 6983 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 7044 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 7105 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 7166 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 7227 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 7288 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 7349 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 7410 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 7471 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 7532 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 7593 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 7654 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 7715 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 25375-27295 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOS01000058.1 Salmonella enterica strain NGUA-20_S8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25375 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 25436 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 25497 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 25558 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 25619 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 25680 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 25741 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 25802 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 25863 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 25924 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 25985 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 26046 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 26107 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 26168 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 26229 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 26290 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 26351 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 26412 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 26473 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 26534 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 26595 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 26656 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 26717 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 26778 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 26839 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 26900 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 26961 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 27022 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 27083 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 27144 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 27205 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 27266 29 100.0 0 ............................. | A [27293] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //