Array 1 61789-59891 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHFA010000018.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-38 NODE_18_length_84861_cov_3.668940, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 61788 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 61727 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 61666 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 61605 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 61543 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 61482 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 61421 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 61360 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 61299 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 61238 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 61177 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 61116 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 61055 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 60994 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 60933 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 60872 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 60811 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 60750 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 60689 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 60628 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 60570 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 60509 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 60448 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 60387 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 60326 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 60265 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 60204 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 60143 29 100.0 11 ............................. CGGCCAGCCAT Deletion [60104] 60103 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 60042 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 59981 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 59920 29 93.1 0 A...........T................ | A [59893] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 79687-78071 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHFA010000018.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-38 NODE_18_length_84861_cov_3.668940, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 79686 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 79624 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 79563 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 79502 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 79441 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 79380 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 79319 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 79258 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 79197 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 79136 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 79075 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 79014 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 78953 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 78892 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 78831 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 78770 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 78709 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 78648 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 78586 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 78525 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 78464 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 78403 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 78342 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 78281 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 78220 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 78159 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 78098 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //