Array 1 38-464 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKX01000035.1 Porphyromonas gingivicanis JCM 15907, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 38 30 100.0 35 .............................. TAGAGGTGTTAAGCAGGATATATGTGTTGATTTTG 103 30 100.0 36 .............................. TCTTTCCCGTAGTACGCATGTTTTTTGGGGAATAGA 169 30 100.0 37 .............................. CCGCGAAATAGGAGGGGATTAGCTGACCAATCTCGAG 236 30 100.0 36 .............................. GATCGATGACACAATTTGATGAGATGTCTAATGGTT 302 30 100.0 36 .............................. GCTCTTCTGCTGTTATGCGTCCATCGAGTGCTGCTT 368 30 100.0 37 .............................. GTTTCTCTTCTGTCCAGCGAATGGTAGTGGGGCTTTA 435 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 100.0 36 CTACTAATCGCACCATTATGGAATTGAAAC # Left flank : CCCGCGAAATATGATGGGATTAGCTGACCAATTTCGAC # Right flank : TAATTGCAAAGATGAAAAACATCCATCACACGGTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTAATCGCACCATTATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 36-1258 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKX01000018.1 Porphyromonas gingivicanis JCM 15907, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 36 30 100.0 37 .............................. TTGCTCAATAAGGGTATCAAGTTGTTTAAGTAATTTG 103 30 100.0 37 .............................. GCCCTCGAACCTGCAGCCAGTACATTGACTACTCGAG 170 30 100.0 37 .............................. CTCTATCAAAAAATCGCAAGCATCGCAGACACGCAAA 237 30 100.0 37 .............................. AAACGCCAGTTTGCTGGAGTCCAGCAAACAACGGACA 304 30 100.0 36 .............................. AACGGATGGGGCTGTCGCTGTACTGTACACTCGATT 370 30 100.0 36 .............................. CATTTCGAGCTGTGCGCTCGAGCTCTTTTAGCTCCT 436 30 100.0 35 .............................. TTGAAATGTCGTTTACACAGAGTGTTTCAGTAAGA 501 30 100.0 36 .............................. ATATCCACTCCACTCTTCACGCTGAGTCTCTGCGTG 567 30 100.0 38 .............................. TGGGGAGTTATCTCACCCAGCCACTTCTTGGTGGCTGG 635 30 100.0 36 .............................. CTTTAACTTGATATATTATATGGCAGGTGACACTGT 701 30 100.0 36 .............................. ACCCTTAAACGCATAGCCGCGCTTCCTTTTAAGGCG 767 30 100.0 38 .............................. TTTGCTATAGCTTTGCTATTTTCTTCCGCTAAATTCTC 835 30 100.0 34 .............................. TTGAGGAATTGAAACAAAAGCACAAAGACAACAA 899 30 100.0 37 .............................. TATAATATATCAAGTGATAAAGGCAGAACGTTTCCGC 966 30 100.0 36 .............................. GTTGCTGGGTCTAAGGTTTTTATTCCGAAGTCCGCT 1032 30 100.0 35 .............................. GAAGAGGCGACACAGACACCTGTATTTGTCCAGCT 1097 30 100.0 37 .............................. AATACAAAGTCAATCACCTTTCGGTTGGCTTTGTCTA 1164 30 100.0 36 .............................. TTCCCCCTCATTGAAGAGGCGGTAAAAACAGAGATA 1230 29 93.3 0 .........................-...T | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 99.6 36 CTACTAATCGCACCATTATGGAATTGAAAC # Left flank : CTAAATTGGATTACCCTCTTTGTCCTCACCAATTTC # Right flank : TAAAATAGGATTAGAGTCTTATTTTGTAAAAGAGATTCGCTCAGGAAAAAACTTTCTTCTTACTTTTGCATCGGGAAGAAAAAATCGGGATATGGCACAGTTGGTAGCGCGCCACGTTCGGGACGTGGAGGTCGGAAGTTCGAGTCTTCTTATCCCGACTTTTCTTTCAACTCTCTCCCTTCTATAGGGCATGCTCTACCTATCAAAACAGAATTTAGTTTTCTACATTTAGTATTACTACAGCTATTGAAAAGGATTAAGGAAATAAATCCTCTCTTTTCATTTCAGGAAATGAGAATAGACAAACACCTATAAAAGAGGGATATAACACATTAAACTCTTGAAAAGAAAAATATTTTCTCTTTCTTTTTGATTATAGCTATTGTAAAATCCATTTTTTATTGTAACTTTGCAATCGGTTTTAACGAGCTCTGCTTCTTTTTGAGGGAAGAACAGATGTGTTTATAGGTTTAAAACTAATGGTGCCATAGCTCAGTTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTAATCGCACCATTATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 42302-42725 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKX01000011.1 Porphyromonas gingivicanis JCM 15907, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 42302 30 100.0 36 .............................. TATAAAGTTGCGAAAGAGGAAGAGTAGCCCAGTCAA 42368 30 100.0 36 .............................. CGAATTTGATATAGCCATTATCGCCTCCAGAGACCC 42434 30 100.0 36 .............................. CCTCGCACTTGGGGGTGCATAAGGTTGCTTTTCTCC 42500 30 100.0 36 .............................. CTATTATAAATGCTGCTTCCTCGTTCGCTTCAAACA 42566 30 100.0 36 .............................. AAAAAAATCCGTATAGACAGCTGGAAAGATACACAC 42632 30 100.0 34 .............................. AGTTTGCGACGGAATACCCTCTATCGTTTACTAC 42696 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 100.0 36 CTACTAATCGCACCATTATGGAATTGAAAC # Left flank : GTATTAACCCTTTCGAGAGTTCTGACAGAGGGTTTTGATTGTTTGCACAGAGGGTTTCAAAAGCTAATCGTATACTTTAAGAAGCAACACATAGAGACTTTCGCACAGGCTTTATTTAATTAAGAGCAAGGTATCGGTTCTGGGGAGAAATATTATATAAGGCTTCAAAGACTATAGAGAAACTTTTTGAATAACTTGCGTTGAGCAAAAACAGAACAAATTACGAAGAGAAGTATTCTTGAAAAAGAGACTTAACAGACTCTATAACGAAGTTTTGTAGCAACTCTTCAAGTTGTCGTCGAATTATTTAAGAGTAGTAGGAAACCTCGTTCTTTATTCTCTTATAGCTGACAACCCAGTAAAAATGGGGAAATTAAATAGTTGTCGTATCTCCACTCTTTTTATAGGACTAGCGATTGACAACTTTTCTGACCTCTTCCACCTCGCTTTTTCCTACACAAGACCTCTATTTACGTCATTTTTTTCTTGTAATTTTACGC # Right flank : GCAAGAGCGTGCATTCCTCCACCCTTTGAGGCATTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTAATCGCACCATTATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 402-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKX01000010.1 Porphyromonas gingivicanis JCM 15907, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 401 30 100.0 36 .............................. GCCCTCAATGTAGGGCAAGGTTGCAAGTTCGGGAAA 335 30 100.0 38 .............................. TTGGGGAACTATACAAGGAACTCAATCGGAAAGACAGA 267 30 100.0 38 .............................. AAAACATCGACGAATACGGTATCAGAGGGTAGTTTAGA 199 30 100.0 36 .............................. TCGCAGTTGTATACTGTGAACTTCAATCACGATTAT 133 30 100.0 34 .............................. CCATCCTTTTTACGCTTGTTTGACTCGCAAAAAC 69 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 100.0 37 CTACTAATCGCACCATTATGGAATTGAAAC # Left flank : CCGATTATAACTGGCTCTATTTTTGTACTTTTGTGTAGAGAAAGAAGGACTTTCAAGAGAAGTTCAAGAGCGAATCTAAACAATAAGAATCTGCAGACAGCAATCTAACAGAAAAACAAAAGCTGAATCTCTCAATCTTGAATGCCAATGATGATATAACAATAGTGGTTCTATTTTTGGGAAAGGAATTAGACAAGGAATACATCTGCTAACCTCTCTCTTATAGACTTTCACAATAGGGATTCTTGAAAAAGAGAACAATGCGACAAATCCTCTTTTACCTCATTCTTAGGTTGTCGTTCTTTACGAAAAAAGACTCATTTGGAAGCAATCGGCCACTCGATATTGTTCTAATCCTTGAAAAATACTTGATTTCTTAAGGTTGTCGTACCTCCACTATTTTTATACAATTACCCATCGACAACTTTTCTTCTTCAAAAAACAACTTTTTTCCTTGGTAAAGTGCGTATTTACGTCATTTTTTTCTTGTAATTTTACGG # Right flank : CAATCTGGCTTTGGCTGTTCGGTGGGTTGATTCGTTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTAATCGCACCATTATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 133445-133185 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKX01000004.1 Porphyromonas gingivicanis JCM 15907, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 133444 37 100.0 38 ..................................... TTGGTTTTCTGCGTACCATATCTCCCTTTCAGTGAAGA 133369 37 100.0 38 ..................................... ATCGCATTCAGAAGTACTAAAGACTGTTTTTCCTTCAA 133294 37 100.0 37 ..................................... AAGAAAGGTTTTCCATTTTGAGGGTTTACCTTAATTT 133220 36 91.9 0 ..........................G.C....-... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 98.0 38 GCATCTATACAAAGACAGTCAGTAAGACTATTAAGAC # Left flank : GGAAAACTAAAATCATATAGAGAACCATGATTAATACTCTCAGAAAGAATCTATTACATAAAACCTAACGACCTTATCAAGGAGTCCTTAACAACAAAAACATTTTCGAAAAAAACAGTTTTATAAAAAAACATCTATCCATCTGTATATGAACCATTTACCAAATCCTCTAATTTCCCCGAATTTCGAAAATACCACTAATCAGAGTTTCAAGAGTTCGATTTTCGAAAAAACAGCCTTTTCTCGAAATATAACTATCTGATTATCAGGAACCATTTTATCTGTTTTTCGAAAATGTCAATTTATTGTTTTTCACAACAGAGATTTTCGAAAATTCAAAACAATTATATACCTTTGTCTCCCAGAGAGATACATCCTATCCAAGCGAGGATAATGTACACATAAGAACAGTTTTAGAGGGGCATTTTCGAAAATATGCAAGAGGCTTGTTATAAAGCCCTTACGATAACGAAAATTCGTAAGTTACTGGTAATCAGATT # Right flank : GAAAGACGAGCATCTATCTACACAGAAAAATTCTTAACTTTGTGAGCGTTGCAATAAGCGCTATCTATGAGAAAGGAGCAAGCAGAACGTCTACTTTCTTTCCTTATTTCATATAGAGTGTTCTTTGATCTTCTTTCTTATACCAAAACCATCTTGAGGTCATCTGACTATAAGTCCTTTTTGCAAAAGCAATTTATCACCCAATTAAATAAGAGTTTAGCTGCAAACGCAGACAGAAATTGAATCGTTTAATCTTTTCTTCAAATGAAAAAAATCACTCTTTTCTTTCTGTTCTCTTTGATTACCATAACCTTTGGGATCAAAGCTCAGAACATTCAAAACGGCGTGCTTATAAGCTGGCCGATGGCTACGGGAGACATTAAAATGCCCGATGAAGTTGTCGAAATTGCCCCTAACTGCTTTTACGAAAGTGGAGGAGGTGACTGGGGAGGCGAGGACAACGGCTGGGAATCTGCCACTAAACCTAACGCTCTGCGCAC # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCTATACAAAGACAGTCAGTAAGACTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 659-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKX01000003.1 Porphyromonas gingivicanis JCM 15907, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 658 37 100.0 36 ..................................... GAAATGTAGTCATACGTTTTGTTCCCTTCTTTAAGG 585 37 100.0 37 ..................................... AATTAGAGTTTGATACTCGTTGTGTTGCACTCTATAC 511 37 100.0 38 ..................................... TTCTGGAATGGAAGATCCTTCGCAGTCTTTCCAGTCCT 436 37 100.0 38 ..................................... TTGATAGCACCTCCAAAACCTGCCAAAGCCGAAACACT 361 37 100.0 38 ..................................... CAATGTTAAGGTATTCAATTTTATTGAGTCTTTGTAGA 286 37 100.0 38 ..................................... TCTGATAAAAGTTTTACCTTCCGAGATATTTATCTTTA 211 37 100.0 29 ..................................... GTTAGAACCAGAGCCCTGAATGTCTCTTA 145 37 75.7 36 AA.A..TCG.CC.A....................... TTTGCAAAATAGCACAGAAAGAGAAAGTATTGATGC 72 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 97.3 36 GCATCTATACAAAGACAGTCAGTAAGACTATTAAGAC # Left flank : TTGCATCAAAAGGGTTAATGGTTAGGCGAGTTAGCATTATAGCTTTCACCAACCATCAACCCGTAATAAAAAGAGGATTAAACGCTCTTCAAGAGCAAAAGCATTTTCGAAAAAAATAATTTCATCAAAAATCTCTATTCCTTTATATATGAGGTCCTTACGAAAAACCCTAATTTTCCCAAATTTCGAAAATGTTACTAATCAGAGTTTCAATGGTTCGATTTTCGAAAAAACAGCCTTTTCTCGAAATATAACTATCTGATTATCAAGTGCCATTTTATCTGTTTTTCGAAAATGTCGATTTATTGTTTTTTACAACAGAGATTTTCGAAAATTCAAAACAATTATATACCTTTGTCTTCCAGAGAGATACATCCTATCCAAGCGAGGATAATGTACATATAAGAACAGTTTTAGAGGGGCATTTTCGAAGATATGCAAGAGGCTTGTTATAAAGCCCTTACGAAAATGAAAATTCGTAAGTTACTGGTAATCAGATT # Right flank : CGTTGAGACACCCTTTTGAGGGTGCCCCATGAAGAA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCTATACAAAGACAGTCAGTAAGACTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 366668-366371 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKX01000002.1 Porphyromonas gingivicanis JCM 15907, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 366667 30 100.0 37 .............................. TCGCAGAGGGGCAGCAATAGAAAGTTCGAGGCTACTA 366600 30 100.0 37 .............................. AGAGGGGTCGGTGTAGACGACAAGGCGACGGTACTGC 366533 30 100.0 37 .............................. TTTATACAGTACATTAACTGCTCGACTATGTGTGTGA 366466 30 100.0 36 .............................. AATGTTCCTGCACACTCTCCAAAACGTGTACTTGGA 366400 30 76.7 0 ....C.................T..TTTCT | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 95.3 37 CTACTAATCGCACCATTATGGAATTGAAAC # Left flank : CCTTTTGTTCGACACGAACAAGAACAGCGAAGAGG # Right flank : GATACAACAAAAAACATCGGTCGCGTCTTACCACAGACACAACCGATGTCAATAAATTGGGGTTCTTATGAAGATAGGGTTCTCCTATGGAGAGTTACCTACCCTAAATAAAATCTCTATTTCAAGAGGTAAGCGTTTAGTCGTCTATCTCCTCTTCCAAAAGCTCTCCTGAGAGAGAAAACTTCAAATCGTACTTACCCGCTTCTACCTCATACATATTCTTTTCGAGCTTTGCATCAGATACAAAACCTATGAGTTTCTTATTTACAAGATAAGTTATAGCAGGAGCAGGTAAAAATGCTCTCAAAGCACTTTCGGGGATAAACAAATGCCAATCTTCGTCTCCTTCAATCTCTACTAAAGAGGCAGGAGCCTTATACTCAAGTTTGTAACCCTCGTTATATCCCTTTTGGAGATAAAACTTATAATGTAAAGCACCCTCTTCTCTCTCTGTACTTGTTTGAACTATTCTATACCCTGGGAAGTGAGCATTCATAAAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTAATCGCACCATTATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 3-490 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKX01000001.1 Porphyromonas gingivicanis JCM 15907, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 37 .............................. AACAGATTGATTGCCACAAAGCCCTTGAAAGGTATGT 70 30 100.0 36 .............................. CTGTAAAGAAAGACGATTACAGTAGCCCCGACCAGT 136 30 100.0 36 .............................. CTCTTCTGGTTTTTCATCTCCCGAAGATGTTAAACT 202 30 100.0 36 .............................. GCGCTAACGCATACTGTTCCGTGCGCCTTGCAACTT 268 30 100.0 36 .............................. ACCGTTCCTGTGATCGCAGAAAGGTCAGCCATCGAT 334 30 100.0 34 .............................. CTTTTACGGGCGTTTGGTATAAGTACAACTGAAA 398 30 100.0 34 .............................. TTTTCATCTCGAAATCTTTGCAAAACTTCTCCTA 462 29 76.7 0 ...T......T......A...-..A...AT | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 97.1 36 CTACTAATCGCACCATTGTGGAATTGAAGC # Left flank : AAC # Right flank : TCGTGTAATGTGCTTGCTAAAACAGATGGAAAGGCTGTGTGTTTTAAAGCATAAAAAAAGGCGTTACCATTTGGCAACGCCCTTTTTCATAATATCACAAGAAAGAAACTAAACAATCTCTTCCTTTTTAAAAGTCAATGTGAAAGAAAGATGTCATAATTGATAAATTATCATGTTATTACTAACACTCGGCTTCAACTATGCGTTTTAGGACACTTTTTCTACTTCAATTTTAGTATTTTGTTTTTAACGCATCTTGAAACAGATCAATGTGCTCAAAGTAATCTTTAATACTCTTTCCGTACAATCAGTCTTTTCGATTTAACGAGAAATAGTAAGTCTTAATGCTTTACCATCTATCAAGATCACGTAGATACCTTCACTTAACGAACGAGTATCAATTCTCAATGTTCCAGCTTCGCTCACCACTTCTTCAAATAGAAGAAGTCCCTCTATACTGTAAATAGAAATTGTAGCGAAAGGCTTGGCTTTTAGCTCTA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTAATCGCACCATTGTGGAATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.10,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 49-605 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKX01000028.1 Porphyromonas gingivicanis JCM 15907, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 49 30 100.0 35 .............................. ATATCCATTGATGACTTTGTTGCAGAACAGTGGAT 114 30 100.0 38 .............................. TATAAGGTTGGTACACTCTTTCAGCTACGTAATCGTCC 182 30 100.0 35 .............................. TGCGAATAGAAACTAAGTCGTCTTTTTCTGCTTTC 247 30 100.0 35 .............................. TAAAACAGCCTGTGAAGTAGTCGTGATTGAAGTTC 312 30 100.0 36 .............................. CGTCGACATGTCTTTGCGTGTTTGGGAGGCTTGCGA 378 30 100.0 34 .............................. CGGAAATTGTTCTGCCTTTATAACTTGATATATT 442 30 100.0 37 .............................. ACTCGACAGGGTGATCCAATCTACATACTTATACTTT 509 30 100.0 37 .............................. TCGGGCGCGCGCTATTGCCACTTTGATAGCTTGGAGG 576 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 100.0 36 CTACTAATCGCACCATTATGGAATTGAAAC # Left flank : ATGGAATTGAAACGACGAAAGCAAACTTCAGCGCCGTTTTTTAACACGC # Right flank : TTGGCGCTTCACTGCTTACTGACGAATTTAAAGAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTAATCGCACCATTATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 660-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKX01000027.1 Porphyromonas gingivicanis JCM 15907, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 659 30 100.0 35 .............................. CCTTGCACTATCTTTGCATTAGGTTTGTTTTCTCT 594 30 100.0 37 .............................. AAGCGGTCGTGGTACTCCACATTGTTATTGATTTTCA 527 30 100.0 34 .............................. AAATCCCCCTCGAAAACACCTGCTACTGCTATCT 463 30 100.0 37 .............................. GCTATCTTCTTACTCTGACTCTCGCTATCGCGATGCT 396 30 100.0 36 .............................. GTGCGCCACTTCGCAATTCGTACTCCATTCCCAGCA 330 30 100.0 35 .............................. AGCACAGAGAGAAGCTGTACTAAATTTATTTCCAT 265 30 100.0 34 .............................. TCTCTAAAAGTCTCTCTACGAACATACTCCTTAA 201 30 100.0 35 .............................. TTCGCTAAAAAAAGACTTGCATTCTCTCAATGTTA 136 30 100.0 36 .............................. TTGGCGGTCGCAGGTCAAAGGAGACAAAGAGGCAAC 70 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 100.0 36 CTACTAATCGCACCATTATGGAATTGAAAC # Left flank : CTTTTTTCCAGCTATGCTACGCTTTTGTGAAAGCTC # Right flank : CTTGTAGTACCGTAGAGATACACAATATCGTTAAGAGGTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTAATCGCACCATTATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //