Array 1 1939-109 **** Predicted by CRISPRDetect 2.4 *** >NZ_DF850104.1 Acetobacter tropicalis strain NBRC 16470, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 1938 32 100.0 35 ................................ GTTGCCTGACTGTGCTTTAAGCGGCACGGGTTGGC 1871 32 100.0 35 ................................ GCCCGCGTTCATGCGCACAGCACCACCAATGGAGC 1804 32 100.0 34 ................................ TGCACCGGCATTGACCACGCCAAGGAAGTAGCTG 1738 32 100.0 33 ................................ TGATTTCTTTAGGGAACAGCATGAGGGCGCTTT 1673 32 100.0 33 ................................ TGTTCAAACTGTAACACCTCACGATCTGGCAGC 1608 32 100.0 34 ................................ TGCATTTCCTGAACTATTCGCACATCCTCGTCAC 1542 32 100.0 34 ................................ CGTCCGGGTAATTGGTCCGGTCGTCCCATCCAAC 1476 32 100.0 33 ................................ ACCTCTTCCACGCTCCTATATCGTGAGAGTAGC 1411 32 100.0 35 ................................ TTGTATCATCACAAGGCTTACTCAGGACGCACCGG 1344 32 100.0 34 ................................ CACTGACTGGAATGCATTATTTACGAAAGCTGTA 1278 32 100.0 34 ................................ TACAGTGAGAGCAAAAGTTATTTCCCTCACATCA 1212 32 100.0 33 ................................ TCTAGTGTGGTAAGCAGTATACTATGACAACAT 1147 32 100.0 36 ................................ GCACGTCATGATGTCGGTGCCGTTGGAAGCGTAGTG 1079 32 100.0 36 ................................ AAGATCAATGGGCTGCCCATCGGTACCACACTTAAC 1011 32 100.0 35 ................................ AATTATGTTGACCCGGCGCTGATTGACATTCTTGT 944 32 100.0 39 ................................ TTCGCAAAGACAAAGCCTTTTTTCAGCAGAGGGGTTTCG 873 32 100.0 35 ................................ CAGTTTGATAAAGCCGTCACCGTAGGGCTGTAGGC 806 32 100.0 34 ................................ TGTCTGGTAGCCCTGTGCATCGTAAAGAAGGATG 740 32 100.0 33 ................................ ATGGTGTCATAAACTGGGAACCGCTTGCCGGTC 675 32 100.0 35 ................................ CGGCTCTGCAACATTCGACATCGCCAGCGTCATTG 608 32 100.0 34 ................................ ATCGCAAGTGGGGTCTGAACCGGCCCCCCCAATC 542 32 100.0 34 ................................ CTCCAATCGGGCACCCCTCTGCAATCTTAAACCG 476 32 100.0 33 ................................ CCATAACCCACCAGCGGACGGGCTTATAGAAAT 411 32 100.0 37 ................................ GTTTTGCACGAGCGAAATCAGGCGGCTGCTATGGTAA 342 32 100.0 36 ................................ ATGCCGTAGGGTTTTTACAATGTTGCGGTATTCGCC 274 32 100.0 37 ................................ CCGGTTCAAATCCGCCCGTGATGTTATCCAGACCAGC 205 32 100.0 33 ................................ CGTGATCTTTCCGGACAGGTTCCGCGTCATGCG 140 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 28 32 100.0 35 GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Left flank : AGGTTGGCAGGGGGCACAAGGTGCAGAATATGTAACAGCATACCGCCACCCGGGCCGAGCACCAGCAGGACCGCATAACACAGCAGGCAGATACGCCAGTTGACGAGAGGCTCCCGCACAATGTCAGTTGATGGCGGAAAGGATGAGGCGGATGCAGTATATAATCCGGGTGGTGTCGTCATTATAGTATGCTACCACCATGAAATCATGCTGTGTGCGACAAAATAGTGTGGCCCAGGTAGGAACGACCATGGCCACCTTATAGCTGACCGCTCCCTATTCCCTGCACGTAGCTATACTGTCCACCTATTTGCGGCAGACCAGCGCGAACCCCAATCACCCCTTAAAACCCCGCCAGGTTCGCGCAACCCATAACCCTTTAAAACAAAAAGATTTTCTTCCAAACCGCCAGATGGAAGCGTAACAATTCCCCGCTTTCCACACAGGTTCGCGCACACCCGCACATTCCCCCAGTCCTTTTCTGCTGCTATGCTCCCACA # Right flank : CTTTCCCTTCGTTTGCCGCGTCTGCCACAGCGGCAGTCGCTCCCCGGTAAGCTTCCGGAGTGAGACGCCTTGTTGATTTTATGATGTGGTGATGTGTTCTGTTCATGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 120341-119112 **** Predicted by CRISPRDetect 2.4 *** >NZ_DF850073.1 Acetobacter tropicalis strain NBRC 16470, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 120340 32 100.0 33 ................................ TCGAGTGTGGTAAGTAGTATCTTATGACAACAT 120275 32 100.0 34 ................................ AGCAAACGTATCAGACACTGAGGCTGAGGCTGTT 120209 32 100.0 36 ................................ TCCTTCACTAGCCGCAGAAAGCTGGGGAATTGGCCT 120141 32 100.0 35 ................................ TTGTAGAGGCCAAGGACATCGTTATAGATTTCCAT 120074 32 100.0 34 ................................ AGGCGGTTAATCAGATCAAACCGGGCTGCACCCG 120008 32 100.0 36 ................................ AATCTGAAAATGGGTAGCCGCTTCCGCTCTTATGAC 119940 32 100.0 34 ................................ TTCAAACCACGCGATGTCAGCCCCTTCCAGAGAC 119874 32 100.0 34 ................................ TGGCCTTACTGGATCAAGGATACTCGCGCCGATC 119808 32 100.0 35 ................................ CACATGCAGCACAACAGCCTCCCCCTGGATGACAA 119741 32 100.0 35 ................................ AAAGGACACAGCGGAACCGGAACCTTTGATTGGGC 119674 32 100.0 34 ................................ TGCTCGGCGCTCAGCCTGATCCAGCATCTCGGAG 119608 32 100.0 35 ................................ GGGATATCCCCGTAGCCGCCGGTGTCCCGGCACTA 119541 32 100.0 34 ................................ TGGACGATGCCTGCTGTAGAGCCGCTTTTGCCTG 119475 32 100.0 34 ................................ ACGAAAATGATGTCACCCGAAGGGGTCATTATCC 119409 32 100.0 34 ................................ CTCCCAATCCAGAAAGGGATGGTCTGTATGCAAT 119343 32 100.0 35 ................................ TCTGGCCCTCCAACGATGGTTATGGCTACAGCAGG 119276 32 100.0 35 ................................ ATCTGCCAGCCAGCTCTCCACGTCCTCTGGAGATT 119209 32 100.0 33 ................................ TGTCCCGCAACAGCAATACGGCCAACGTCATAC 119144 32 87.5 0 .............T...G......G......T | C [119123] ========== ====== ====== ====== ================================ ==================================== ================== 19 32 99.3 34 GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Left flank : GCCAGATTCTGGTGGCCACCCGTGGGCGCGAACAGACACGCCAAAGCCTGCGCGTGGCGGCGGATGTCTGGTGGGTGGAAAGCCACTGGGTTATTCTGGAAATGGTAAAACACAATATAGGCTGGGCATTTGTCTCAGACCATGTGCTGGCGGCCTCTCCCACAGCGCCGGATATTGTGGCCCCCAACCTCCAGTTCGATGCCGGAGAACGCCTGACCCCTCTTGTCACCGTGTGGCACAAGAAGCATCCTCATGGTCCTGCCGCCCAATGGCTCCGCAACCGCCTGCGCCAAGGCGGTATTCCCGGTGTTACGCATCCGTCGCGCGAACCCTGATCACCCATCAAAATCCCGGCAGGGTCGCGCACGCGTCAACTCATTATAAAATAAGAATTTTTTCAAACACGCTGATCCCAAAGCGTTCAGCAGCAGCACTCGCAGCCACCAGTTCGCGCAAAAAGCGCATTCCGCCCAGCCCCAGACAGGTGCTAAACCTACACC # Right flank : ATGGGGGGAGAGCACGAATTGGTCATGTTCTCTGGCGGGCCACATGCAGGCGCGTTGGCGTAAGCCGGGAGGAGAGAACTAAAGCTCTTGCGGGCTTCAGGGCATCTATGCGCAGAGTGGAGGTAAGGATTGCTTAATAAGCAATGGTGACAGGTCATTCTGAATGATTACATTTTATTAAGAATAAGTGATACCTGAGGGGAAGGGAGGTCAGTGGTTCTTTACGCGCACTCTCTCCCTGCTCCTGCAGACAAGGCGCGATGGGAACCTTTGCGAGAGCATCTTGAGTGTGTCGCGCAAAGAGGGGCGCTTTTTGCACAGCCATTCGGACTGGCCATGCTCGCGCGGGCTGCGGGGCTTTTGCATGATATTGGTAAAGCATCTGCGGCGTATCAGGCTTATATCAGTTCAGAAGTCAGCCAGAAGGGACCAGATCACAGCACGGCGGGGGCACGTGAGGCTGTAACGTTATATGGCCAGCAACTGGGGCGTTTACTCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 183713-182688 **** Predicted by CRISPRDetect 2.4 *** >NZ_DF850073.1 Acetobacter tropicalis strain NBRC 16470, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 183712 32 93.8 36 TA.............................. GGGATGGACGAGGCCTACAAAGCATTTCAGCCCCCG 183644 32 100.0 33 ................................ TATGTCAGACGATGATGCGGCCTGTATCTGTGC 183579 32 100.0 34 ................................ GTGCTCTCTCTGATGCTGGCTTGGAACTCACGCA 183513 32 100.0 33 ................................ CAAAATGAAAGCCTGCCGTTGCCGGTCGTATCC 183448 32 100.0 34 ................................ GTCTGGATAGACCGTGCCGCATTGTTGCCCAGAG 183382 32 100.0 34 ................................ TATGATCTTGCCTGTAAGGCTGATTTGGTTGTTG 183316 32 100.0 35 ................................ ACAGAAATTGGCAAAGGCCATTGCGCCCATTGCCC 183249 32 100.0 35 ................................ CCAAAAATGTTTGCGATGATGGATAAAGGTGAGAT 183182 32 100.0 34 ................................ CAGTGGTTCGAGGGGGGCGCTGTCTCCGGCGCGT 183116 32 100.0 33 ................................ CGTCAACAGATAACGGGACGGTAGCTCTGGATA 183051 32 100.0 35 ................................ ATGATAAGGTGGGGGATGTAGGCTTGCCTGTGTTG 182984 32 100.0 34 ................................ CCCTATCGTGGCATGCTGGAATGGCAAGAACAGT 182918 32 100.0 34 ................................ CAGATAGATTGTTGCTGGCATCACCGACAATATC 182852 32 100.0 35 ................................ AAATACCCGGAGCCGGGGTGGGAAGAACGGGCACG 182785 32 100.0 34 ................................ TTTCTGCTGATTCCATTCCAGTCCGATATCGTAG 182719 32 96.9 0 ...................T............ | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 99.4 34 GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Left flank : TCACCAGAGCAATAATACCATCAAAGCCTGATTACGCCCGCGGCTCTCTCCGGATGC # Right flank : TGCCTGTTCATAAGCTGTTTCGCTCCGCGTTGTGCGGATCGGTAGCCGGGGGAGGGCGAGTCTTATAGTGCCGTTGTGGTGGCGGGTGCTTTCTCTCCCCTGTGGCCGTCTTCTGTATTCAGGAAAACACGATTGTGCGGCGGCCGTTTAGCATAACACGTTGTTCCACATGCAGTTTTACCGCGCGGGCCAGAACTTGCGATTCAACGCCCCGGCCTGTAGCAATGTAGTCCTCGGGGGAGAGGTTGTGGGTGACGCGGGCGGTTTCCTGCTCAATGATAGGCCCTTCATCCAGATCAGCCGTTACGTAATGGGCCGTGGCGCCAATCAGCTTTACCCCGCGCGCGTAAGCCTGATGGTAAGGGCGTGCGCCCTTGAAGGAAGGCAGGAAGGAGTGGTGGATGTTGATGATCTGTCCGCTCATTTCAGCGGAAAGCCGGTCAGAGAGCACCTGCATGTATCGGGCCAGAACAATCAGGGAGGCCCCTGTTTCCTTCACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //