Array 1 4859-6987 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORYD01000295.1 Xanthomonas fragariae strain CFBP 5260 isolate CFBP 5260, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4859 28 100.0 32 ............................ AGACGGTACAACTGCATACGCTAGAGGTATAG 4919 28 100.0 33 ............................ GTCATCGTGACAACCGAATACCGTGGTGTCTTC 4980 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA 5040 28 100.0 32 ............................ TTTCAGATCCCTCGCCTGGGTGGCCTACTCGT 5100 28 100.0 32 ............................ GTCCATGCGGCCGGCAGCCAACAGGCTGCGAA 5160 28 100.0 32 ............................ TATGTCGCTGAGGGGTGATCCATACCTAACCC 5220 28 100.0 32 ............................ CTGGCTGCAACCGCTACTCCGTAATAACTAGG 5280 28 100.0 32 ............................ ACCAGGTCCCGGCCCTTCTGGGAGTTCACTGC 5340 28 100.0 32 ............................ AATGAGCAATAACTTTTGCGCTAGTGTTCATC 5400 28 100.0 32 ............................ ACATTATCTTTTCCGCGAATCAAAAGCTTAAT 5460 28 100.0 32 ............................ TTCCGGGGCAATCCCTTTACGCCTTCTTGGCC 5520 28 100.0 32 ............................ ACCAAACGAACTGGTCCAGGCTAGGATCCGTT 5580 28 100.0 32 ............................ TTCTGGGACCACACAACCTCGCCTGCGTGCAC 5640 28 100.0 32 ............................ GTTCAGGGCAGGCGAAAGGTCTCAGCGCTGCA 5700 28 100.0 32 ............................ GCATCGACCCAATGGCCGCCCTTGCCAGGCTC 5760 28 100.0 32 ............................ TGCAGATGCGCGCGACGAATATCGGACGTGTC 5820 28 100.0 32 ............................ AAACATGCGGGGATCAGCACGGCCATCGGTTC 5880 28 100.0 32 ............................ CGTAGCCGGGAACTCAGCCAACTGTGCTTGCA 5940 28 100.0 32 ............................ GATTTCACTGATTGATCTGGACACTGTGCAGC 6000 28 100.0 32 ............................ TCGAAGTAGGCATAAAGCACGTTGGGCAGCCG 6060 28 100.0 32 ............................ CAGACAAGCCAGACGCCGACCCACTGATAGTC 6120 28 100.0 32 ............................ CGTCGTTTCGCGTCGTCCACCGCAGCCAAGGT 6180 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG 6240 28 100.0 32 ............................ ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC 6300 28 100.0 32 ............................ CATTAGGCTGCACAGTGTCCAGATCAATCAGT 6360 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 6420 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 6480 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC 6540 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG 6600 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA 6660 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT 6720 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT 6780 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC 6840 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG 6900 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT 6960 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCGTAGACCCTCAAGACCCTCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCGCCAGTTGAACCGTGGCGGCGGTTGGGGTTGTAGAACATCTCGATGTAGTCGAATACCTCGGCGCGAGCGGCGTCCTTGGTGGAATAGGTCCGCCGCCTGATCCGCTCGCGTTTGAGCAGGCCGAAGAAGCTCTCCACGGGTGCGTTGTCGTGGCAGTTGCCACGCCGACTCATGCTGCACACCACGCCATGGGACGCCAGGAAACTGCGCCAGTCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //