Array 1 174536-178768 **** Predicted by CRISPRDetect 2.4 *** >NZ_JEWY01000003.1 Acinetobacter baumannii 299505 ab299505.contig.2_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 174536 30 96.7 30 .............................G TTGCTGTTATATCTTCAACTGCATTATTTG 174596 30 100.0 30 .............................. GAAAGGTCATAATATTTGGACTGTACAGCT 174656 30 93.3 30 ............................TT GACTTATCATTTGGTTGATATGGGCGATAT 174716 30 93.3 30 ............................GT GTTACTGGTGAATATCAAGGTGATGTAAAA 174776 30 100.0 30 .............................. TATCTAAATGATGAACATTTTGCAGATGCA 174836 30 93.3 30 ............................TG AAAAGCAGACCCATAAATTGTATTGTGCAA 174896 30 100.0 30 .............................. AAGAGACATGAATATTTACTTTGGCTTGAA 174956 30 96.7 30 .............................C TTCAAGCAATGCAAAACATCGCCGTAATTA 175016 30 93.3 30 ............................CT TAACAACTTTTGTTACAGCTGGGGCGATTA 175076 30 93.3 30 ...............T.............C CAATTAGCACTGCTAAATGAATAACTTGAC 175136 30 93.3 30 ............................TT AGGAACAATTTCAGAGTTAGCCAATAAATC 175196 30 100.0 30 .............................. TGCACATGCAGAAGTAATGGCACTCCTAGA 175256 30 93.3 30 ............................CT GAGTTTAGGTCACTCAGTGCTCGATCATAA 175316 30 93.3 30 ............................TC AAAACTTTAAAGATCGAGTGCTGATACCTG 175376 30 96.7 30 ............................T. ATGATCAAAACGCCAAAGTAAAAGTTGTAA 175436 30 93.3 30 ............................TT GATGAACGTTACTATCAAAATGATAGTGAT 175496 30 93.3 30 ............................GC GCAGTGTTCGCCGTGCGAGGCTTTTTGTTG 175556 30 100.0 30 .............................. AGTATTGCAGAAAGCTAACCCAAATTATGA 175616 30 96.7 30 .............................T TAACTGCTCGTATTTTGAATAAGCTGTAAA 175676 30 93.3 30 ............................TG AAGATGTCATCACCATGTGAGCGTATGGAA 175736 30 93.3 30 ............................TT TGACTGCTTAAACTGATACATTATATTTAC 175796 30 93.3 30 ............................TG TACCATACGCATTACATTGTCCGTCGGCAC 175856 30 93.3 30 ............................GT ACACTGTACACGCTCCACCAACATGTTTAG 175916 30 96.7 30 .............................G AACAGTAAGATTTTCATAAGCCAAGTTGTC 175976 30 100.0 30 .............................. CCAGCAAAAAGCCTTCTCTTTGGTGCGTTA 176036 30 93.3 30 ............................TC AGCAAGAACCAGCACAACCGACAAAAAACC 176096 30 93.3 30 ............................TT ATCCAGGATGTAAGGCAGTTCGGCACCTTT 176156 30 93.3 30 ............................TT GTAAAAAAGTAGGCTAATCTTATACGTACG 176216 30 96.7 30 ............................C. AGGATTTACGCAGTGATGCTGACCTTTCTA 176276 30 96.7 30 .............................G CACAATTAAATGATCCCGTGGCCATCTTTA 176336 30 100.0 30 .............................. ACAGTTCACGCTTAGTCTCGATATGATGAC 176396 30 96.7 30 .............................T ATTGCCCTTGGGATTCTTTTAATAATGATT 176456 30 96.7 30 ............................T. GTAATTTCAAGTCGCCCAATGCGTCTTGAT 176516 30 93.3 30 ............................GT GTAAATACGAAAAACCGATAGTTTCTCAAT 176576 30 96.7 29 ............................T. ATGTTCCCCTTTAGAAGATGAGGGGAAAA 176635 30 96.7 30 .............................T CTTCCAAAACAGCACGAACATACATTGAAC 176695 30 93.3 30 ............................TG AAAAATTCATTGCTCTAGCAACCGATAACT 176755 30 100.0 30 .............................. CTCACCAGTTGTCACAGGGAGTTCATCTAA 176815 30 100.0 31 .............................. TCATCCCAAGACAACAACAGGCTTATATCTT 176876 30 96.7 31 .............................T AAGTTTTGCGCTGGAACTTTACCCTTCACAA 176937 30 96.7 30 ............................T. AACCAGATTTACCACGCTCAAGACCCTGCA 176997 30 93.3 30 ............................TT CCAGCGACATAGACGATTTATTTGTATTGC 177057 30 96.7 30 ............................T. CGACCTTATGAGAATCAAAGTACAGTTTTG 177117 30 100.0 30 .............................. CGGGTGGCGATCCGTGGACATAACAAAACT 177177 30 96.7 30 ............................C. CCCATCATGATTATCAAAATAGTCTTGGGC 177237 30 100.0 30 .............................. AAAGCAAAAAGCCCATCGAATGATGAGCTA 177297 30 96.7 30 .............................G CATAGTGAGCTATTGCAGCCGCTTTAGAGT 177357 30 100.0 30 .............................. CTCCATAGCAGCCGTTAGAACGAATCGAAC 177417 30 93.3 31 ............................TG GGCCACAGGACTTTTACGTGTCGATGGGTCT 177478 30 100.0 30 .............................. GCTCATCGTAGCCAGTGACTCTGTATTTTT 177538 30 96.7 30 .............................G TCACAGGAAGTGATGCTGCTGGACAGTCGG 177598 30 100.0 31 .............................. GATCAGAAGGAATGGTTGAGCCAAGTGATTT 177659 30 93.3 30 ............................TG CATCAGATTTCCCCGCTTTTTTTAAATCAA 177719 30 93.3 30 ............................TT AAAGTTTATGATTACAATGGCAATGAATTA 177779 30 93.3 30 ............................TG ATGCAAATGAATTAGCTGCGGCAGGGTTCA 177839 30 93.3 30 ............................CT CAAGCAATGCAAAACATGGTGGCATTTGCT 177899 30 96.7 30 ............................T. CAAAACCATACAGTTGATTCTGTTAAGTCC 177959 30 93.3 30 ............................TG TTCCGCAAGATTTGAAGTTCAAGCACTTCC 178019 30 100.0 30 .............................. TTAGAGCCACTGGCTTGCGCTTTTAAACCA 178079 30 96.7 30 ............................T. ACCACGACCATTCCCATTTTAAGAAAACCA 178139 30 100.0 30 .............................. TAATTCGCATTTTTGAATCAACAACAGATA 178199 30 93.3 30 ............................TC TATCGCTCAGAGGGAGTTATTAGAGAACAA 178259 30 96.7 30 .............................T AAGTGTCGTACATGGTGCAGCTAACTACAT 178319 30 96.7 30 .............................G TACCGTTACCGCCTTCGCCAGACAGCAATT 178379 30 100.0 30 .............................. ATAGCTTTCGAAGATACTTTACGTTCAGCA 178439 30 96.7 30 ............................T. GTTTTTATTAAGGAGTTACTGCGGCAGAAC 178499 30 96.7 30 ............................T. ATCTAATAAATTATGCTTTCGATAAAAAAC 178559 30 93.3 30 ............................TT CTCCAAGTAAAGAATAAAACAATATACCGC 178619 30 96.7 30 .............................T TCCACTGCAAAGCAATGAGATGAAATCGCA 178679 30 93.3 30 ............................TC AAGGCGATCCACCTCCCGTCACAGTCATTT 178739 30 70.0 0 ...........T.....T..C...AGCGTT | ========== ====== ====== ====== ============================== =============================== ================== 71 30 95.7 30 GTTCATGGCGGCATACGCCATTTAGAAAAA # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCTCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATT # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTTATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAA # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //