Array 1 244682-245685 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZGB01000005.1 Salmonella enterica subsp. enterica serovar Virchow strain 66-4890 NODE_5_length_262752_cov_2.28078, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 244682 29 100.0 32 ............................. TTTTGTTTAATTCTAAAACGGGACAAATGGAA 244743 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 244804 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 244865 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 244926 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 244987 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 245048 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 245109 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 245170 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 245231 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 245292 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 245353 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 245414 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 245475 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 245536 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 245597 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 245658 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 261955-262715 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZGB01000005.1 Salmonella enterica subsp. enterica serovar Virchow strain 66-4890 NODE_5_length_262752_cov_2.28078, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 261955 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 262016 29 100.0 32 ............................. CACATGCACCTTTTGAGCCAGTAATTGACAGG 262077 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 262138 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 262199 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 262260 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 262321 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 262382 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 262443 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 262504 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 262565 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 262626 29 100.0 32 ............................. AAACTTCCGTGGGAGGAAACGGACGGGCAAGT 262687 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TGGATTGCGGAAGATGATGGGGTGCTTAACCCGTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 61-2531 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZGB01000015.1 Salmonella enterica subsp. enterica serovar Virchow strain 66-4890 NODE_15_length_108791_cov_2.24683, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 61 29 100.0 32 ............................. TTGGCTATTTACGACGCGGCACTGGCCCGTTG 122 29 100.0 32 ............................. TGGGTTGACGGTGCCGTGATTGACGTTGCCGC 183 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 244 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 305 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 366 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 427 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 488 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 549 29 100.0 32 ............................. CCCGAACTGATTGATGCCATCAGTCAGGGGGC 610 29 100.0 32 ............................. TGTGGTGGATCACCGAGTGTAGAAAGCGGCCC 671 29 100.0 32 ............................. ATGATCGCGCCCTCATCTCCCCAGATTTTTGA 732 29 100.0 32 ............................. GCAAAACGTCTGCAATGCCTTTTTTAACAAGA 793 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 854 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 915 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 976 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 1037 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 1098 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 1159 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 1220 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 1281 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 1342 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 1403 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 1464 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 1525 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 1586 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 1647 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 1708 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 1770 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 1831 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 1892 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 1953 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 2014 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 2075 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 2136 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 2197 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 2258 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 2319 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 2380 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 2441 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2502 29 93.1 0 A...........T................ | A [2528] ========== ====== ====== ====== ============================= ================================= ================== 41 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTCCGATCTGCCAGCGGGGATAAACCGTGGATTGCGGAAGATGATGGGGTGCTTAACCCG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //