Array 1 4129-3492 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLPG01000009.1 Klebsiella quasivariicola strain Kp.61032 NODE_9_length_181768_cov_37.6511, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4128 28 100.0 33 ............................ TGGGTTTTCGTTCGAGTTTAGCGCCTGCAGGCG 4067 28 100.0 33 ............................ CCAGTCGCCAGGAACAAACTGTTCAACGGTTAC 4006 28 100.0 34 ............................ TTATTATCTGCCGGTCGAATCCTCATATTTAGAG 3944 28 100.0 33 ............................ TACATCTGGCGCGAGAATAAGAAAGGCAACCCC 3883 28 100.0 33 ............................ TTGCTCTTGCCACAGCCGCGCCACGTTTATTTT 3822 28 100.0 33 ............................ CGGCCGGCCCTCTATGATCCATATTTTTGAACC 3761 28 100.0 33 ............................ TCGAATGGGAAAACCTGTTCGCTTTTTTATCAG 3700 28 96.4 33 ......................A..... TGGGATTCAGCCTGGGTTCTCTCTTGATGTGAG 3639 28 96.4 33 ..........T................. TCATGTAACTTTCAGTGCGCACCTTCTTTCATG 3578 27 92.9 33 .............A.......-...... TCTCGTGATGGTCTATGACGTCGCCGTCGGTGG 3518 27 82.1 0 ............C.T......C-.A... | ========== ====== ====== ====== ============================ ================================== ================== 11 28 97.1 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTCAGCGTCGGCCAACCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTCCCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGTGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTGCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCCGGGAATGACAAAAGTGTTTTGCGCCTGGCTGCGGCCCGGGGAGGCGAGTAGGGTAGACCGGTCCTGGTCAGCAGCAAGTCAACGGTGGTGAGATGGGGACTTACTTTTTCGTTTGATGAATGTGATGCTGATGCGGAACCCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : AACAAAGCTGGTCAACCGTTGTTATCGTTATCTTGGTTTAGTTTGGCAAACACAGTTTAATATATTTTTCATGTGAATTTAAAATTCATATTCATGTGTTATATTTATTTTTTATTTCGCAATGGTTGTTAAGTCCATTTTTCTGGCGCACCTGAAGTATGATTATTCATACTACTTATTTATAATGTCTGATATTGTCGATTTGATGTCTCACATTAAGCGCAGCGTTTGTGAGTGCTTTTTATTTTATAAAAAATTATTTATAAAGCTTCCTGACTTTAGTATTAATAAAACGCACATGTTTTATTAAGGATGATTTTCATGAGGCGCTTAACCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGCCCGGCGAAAACCCGGATGTTGAGTGATGGTCGCGTGGTGCAGGGACGCTCGGTATTGAGTCATTGTCAGATTGTCGGGGAGATTGCCCGGGCGCTTATAGCGCTGTATCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 89046-92859 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLPG01000013.1 Klebsiella quasivariicola strain Kp.61032 NODE_13_length_152501_cov_41.5539, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 89046 29 100.0 32 ............................. CGGCACTGATAAGGAGACTGCAGCGTCTGGCT 89107 29 100.0 32 ............................. CAACGTCGAACGCTTTCGTTAAATCCTCAAAG 89168 29 100.0 32 ............................. TCTCCACTCATATTGCAACCAACATTTACAGA 89229 29 100.0 32 ............................. AGTATCTTAACGGCCTTTATCAGCCACCAGAT 89290 29 100.0 33 ............................. GTGTTCGCCTCCCGGCGTGCGATATCCATCCAC 89352 29 100.0 32 ............................. TCCGGGCATTCGTCGAGAAGACGAAAAAGAAT 89413 29 100.0 32 ............................. GTATAAAGACGCCGAAGGCTATTAGCGGGAAT 89474 29 100.0 32 ............................. CGTAGCCTCCATCTGGTCGTAAATCTTGCGGG 89535 29 100.0 32 ............................. ATATTTTTTACCGGGATCTCGATACCCCAGCA 89596 29 100.0 32 ............................. TCCAGCCCTTCCGGTGTGATGTCCCACTCTGA 89657 29 100.0 32 ............................. GTAGCGATGTGCTGGCGCAACTCCGGCAGCTT 89718 29 100.0 32 ............................. CTGTTTCATCCGCGCATTGACACGGAGCTGCA 89779 29 100.0 32 ............................. CGCCTCTAAATATTATAGTATCGCAGACGTCA 89840 29 100.0 32 ............................. GTCACTGGCCGCGCTATTTCCGGGGGTAAGCT 89901 29 100.0 32 ............................. GCGATCTCTTTTGTGCGGGGCGCCGACGCTGC 89962 29 100.0 33 ............................. TATCGGGCGGACCAGGCCACCCCCGTCGCCCGC 90024 29 100.0 32 ............................. TGTACCGCGTCAAGCCCGTTTTCGCGAATATC 90085 29 100.0 32 ............................. GTCGAAAGCCCGAATGGCGATATCGACGCTAT 90146 29 100.0 32 ............................. CCGGGATGACAAGTTCCGGCCCATTGAACCCG 90207 29 100.0 32 ............................. GAAGCTGAAGATATAGCAGTCGACGGGGCTGT 90268 29 100.0 32 ............................. CCGTGATCATCTCCCGCGGGGAAATGGTCGGA 90329 29 100.0 32 ............................. AGCAATAGCAATGGCCTGCGCCTTAATTAACG 90390 29 100.0 32 ............................. CCATTTTTAGTAGCAATAACCTGCAATGACAG 90451 29 100.0 32 ............................. AGTTTGTTCGTCGCATTAATGGCGTGAACGTT 90512 29 100.0 32 ............................. AATGCGCCGGCCGAGGTGCTGGTGCGCGAGGT 90573 29 96.6 32 ............................A CCGTTATCAGCCAGGATACCAGGTTCTCACGC 90634 29 100.0 32 ............................. GCAGATCACCAGCCTACAGGCCATCTTCCAGA 90695 29 100.0 32 ............................. CAGGCGGGGCAACCTCGACGCAGCGCGCCGGA 90756 29 100.0 32 ............................. GTTTGGATCTTGTCGCCGTAGCCGGGCCAGTT 90817 29 100.0 32 ............................. GCGGGCATCTCTCGTGCCGGTCGCACCGCGCC 90878 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 90939 29 96.6 32 ............................T GCAGTAACCAGCCGCTCAGCTCCCGATTTCTG 91000 29 100.0 32 ............................. CCTCGTCTCCAACCGGCTGCTCGTTGAAGTTG 91061 29 96.6 32 ............T................ GATCAGATGTACCCCATCTTCAGTTGGGGATG 91122 29 100.0 32 ............................. AGTCAAGACCGGTACCGCGGCGGATATCCTGA 91183 29 100.0 32 ............................. GCGGTTACGTTGTGCTGGATATCTCCCTGAAA 91244 29 100.0 32 ............................. AGGGGCTGACACGTGCCGGCCAACTGTCCCCC 91305 29 100.0 32 ............................. GATGAAATTTAGGTGCGCACCACTTTTCATAT 91366 29 96.6 32 ............................T GCAGTAACCAGCCGCTCAGCTGCCGATTTCTG 91427 29 100.0 32 ............................. GCAAAAGATGACTGGTTAATGTCACCGCGCAT 91488 29 100.0 32 ............................. CCACGGTGTCAGCGTGCAACTCGTCGTGATGC 91549 29 96.6 33 .............A............... CGCATGCAGAAAACCGCGACGCGACTTTTAGGC 91611 29 100.0 32 ............................. TAATCAAACGACGCATTACCGGGGTTTCAGAA 91672 29 100.0 32 ............................. CAGGCGCTGCAGAAAATGTACCAGGACGATCT 91733 29 100.0 32 ............................. CAAATGATTCGCGCGACTAAAGTTGCAGCCCG 91794 29 100.0 32 ............................. AAAAAACTGGTCTTGAAGGGCTTGACCCGAAA 91855 29 100.0 32 ............................. TCGCCGTACCAGAAGGATATTTGTTTTAATCT 91916 29 100.0 32 ............................. GTTCGCACTGTTATCCAATCGTGGAGGAAATT 91977 29 100.0 32 ............................. TTAGTAAACGTTGCACCCATGCGGCCAAGTGT 92038 29 100.0 32 ............................. GCGTGGTGCCGAGCAGCATCATCCCATATAAA 92099 29 100.0 32 ............................. GAATTTGCATGAATACCGGATCCGCTCTCGCA 92160 29 100.0 32 ............................. GCTCAAATAACAGACGAACGTTTGGCAAAAAT 92221 29 100.0 32 ............................. TCAATACATTTGAAGCTGCTTTTGCTCCTTTT 92282 29 100.0 32 ............................. CGCTCTAAATTTTGGGCTTCTGGATATGATGT 92343 29 100.0 32 ............................. GTTCACGATCTCTTTGTCGGCTTCCTCGATAA 92404 29 100.0 32 ............................. AAATCATCAACGGCTCCAACACGACCGTTAAC 92465 29 100.0 32 ............................. ATTTCCATTCGCCCCGGTGTTGCTTGCACAGT 92526 29 100.0 32 ............................. TGGCACGGCAACCGCGAAACCGTGGGTTTTCG 92587 29 100.0 32 ............................. AATACAACGACGTCCTGACGGATAAAGGGATG 92648 29 100.0 32 ............................. GAATGGTCACAATTCAAGGGGGTGCTGGCGCT 92709 29 100.0 32 ............................. TTAACGGACAGACGTTGCTCAACGTAGTCCGA 92770 29 100.0 32 ............................. TTAACGGACAGACGTTGCTCAACGTAGTCCGA 92831 29 93.1 0 .........................G..T | ========== ====== ====== ====== ============================= ================================= ================== 63 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGTTGTCGGCAGGCGAAATCGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATCCCTGAGCCTGAATCAATGGGGGATAGCGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTCCCTCCTCGTCTGCGGGGGCGGCTCGCCATCTGGCTGCTGGAGGTTCGAGCGGGAGTCTACGTTGGCGATACCTCAAAGCGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGTGAATCAGGTTTCGAGTTCCAAACCTGGGGTGAGAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTTCTTCCCATTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGGAATAAAGTTGGTGGATTGTTGTCGCCTTAAAAAGGCATTAAAAAACAGTAATATATGTTTAGT # Right flank : TGCCACTAACTTCATCGAGCCTTATGGTGAGGACGAAAGACGACTGAAAATAAGTATCACTACCTGCCGCTCTTTAACGGAATGCCCCCTTAATTAGCCGATATCACTGCTTTTTCACCGTCTCCTGGAGCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGTATGGGGCGCCGTATTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGTCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATCATCTTCAGGCCCCCGGTTGTAATAGGGCCATGAATACCCGCCACCATACAGCGTAAAATCGGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //