Array 1 4950805-4949558 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017780.1 Amycolatopsis sp. BJA-103 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4950804 29 100.0 32 ............................. GGAACAAAAACTATGCCTACCAGCCAGAACGG 4950743 29 100.0 32 ............................. CAGCACGTCCCGCTCTCGGGTAAGGTCGGGAA 4950682 29 96.6 32 .........................G... TCGAGTACGACGGCGACGGACAAGGCACCCGC 4950621 29 100.0 32 ............................. GTCTCCGTCATCGAGTGCGGCCAGCGTGTCCA 4950560 29 96.6 32 ............................C GCCGACCGGGAGTTCGAGCTGGCCGTGAGCCA 4950499 29 100.0 33 ............................. GACCGGGTGCACCACGACCCGGCGAGGGCGCTG 4950437 29 100.0 32 ............................. CAGTACGAGGGCAAGGTGATGTACCGGTGGGG 4950376 29 100.0 32 ............................. AAGGCCGGCGAGTTCGCCTCATCGGTAGCCAC 4950315 29 100.0 32 ............................. GGCGGCATCGCACAGCCGTGGGGCACCGCGAT 4950254 29 100.0 32 ............................. CAGTACGAGGGCAAGGTGATGTACCGGTGGGG 4950193 29 100.0 32 ............................. AAGGCCGGCGAGTTCGCCTCATCGGTAGCCAC 4950132 29 100.0 32 ............................. GGCGGCATCGCACAGCCGTGGGGCACCGCGAT 4950071 29 96.6 32 ...........................T. CTCGTCTTCAACACCGAGACGATCTGCTGGCT 4950010 26 86.2 32 ...........---T.............. GGATCCTGGTTCGTGCGGTAGATCCGGATTTG 4949952 29 96.6 32 ....................A........ CTTGCCCCCAGGCGATGGTAACCGGATTTAAC 4949891 29 100.0 32 ............................. ACCGGCGGCGTCGGCCCGCAGGTCATCGCCGC 4949830 29 96.6 32 ............G................ CCTTTGAGGACGGTTCCGGTCAGCTCGACAGG 4949769 29 96.6 32 ........T.................... GCGATGCGGGCGCCGATGCCCAGGGCGATGAG 4949708 29 93.1 32 ...T.......G................. TGCCCTACGAGCAAGACGATGAGCAGAGGGAC 4949647 29 96.6 32 ................T............ GCCGTGCCGTCACACCCGCCGGTCCCGTTGAA 4949586 29 89.7 0 ........T...GA............... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 97.4 32 GTGCTCCCCGCATGCGCGGGGATGATCCG # Left flank : CCTATGGAGACCTGTCATGACGGTCATCGTTCTCACCGCCGTGCCACCGGGTCTCCGCGGCCACCTCACCCGCTGGCTGCTGGAGATCAGTCCTGGCGTCTACGTCGGATACGTCTCAGCCCGCGTCCGTGAGCTCATCTGGGAACGGATCGTCGAGTTCGTCGCCGAAGGCCGAGCTTTGATGGTGCACTCTGCCCAGGGAGAACAACGGCTCGAGTTCCAGGTACACGGACACGACTGGACACCTGTCGACTATGACGGCATCACCCTGATGCGCAGACAAACCACCCCCGCCTACGTCCCAGGAAACCCCGCAGACGTTCCACGCCGACGGCTGCGGACGGCTCGTCAGAGGGCGCCTCGACGCGCGACGAGACCGTCTGGAAACGGCGCAACGCCAGACGAAAATTCCGCAAGAAAGAGTAATCCTAGCCTGCCCGCAGCCAAACAAAGTGAAGCAAAACAGCTACCAGACGACGCTCCTTCGCAGGTCAGGAAGT # Right flank : ATGTACGCCATACGACCCCGTTGAGCACGACAGGAAAAACGGAGACAGAATGGAGCCCAGATCGACCGTTTGTAAACGCAAACATGATCTTGCACGTCGAGAAATTGCAGTTAGAAGCCCTGCATTTGCGATCTGTTTCAAGATCGCCGCAGTCGAACCCGCTGGCTTTAATCCGAGGGAATCTGCAGCGGCCAGGAGCGCCGACTCCGCACCGAGTCCGCCCCGCCCGGAATGGTGATGGTCATCGCGGATCTCCCCGGCGGAACGACACGGCAAGTGTGCGGCTTGCGCTGGCCTGCGACTGGTCAAGGTCGCGTGTCTTCTCCGTCGTCCGGGGTCGATCCAAGGATGGCGCGGATGATCGCCGCGACCGCGAGCAGCCCGGCGGCCAGGCCGACCTGCGACGTGTCGGACGGTAACGCTGTTTGCATTCGGTTCCGCTTCGGGCAGCTTCGAATCGCTGTCCTGGAATCAGGGTGCCCACTGCCGTTGGCAATTCA # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4960782-4960264 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017780.1 Amycolatopsis sp. BJA-103 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4960781 29 100.0 32 ............................. TACACCCGCCCGCTGGTGGAACTCGGCGCCGT 4960720 29 100.0 32 ............................. ATCTCGACCGGCCGTGGTCGGCGTGCATCTGG 4960659 29 96.6 33 ............................C GTGATCGATGGACCTGAGATCGACTTCAAGCCC 4960597 29 100.0 32 ............................. CCGGGCATGTCGATCTGCTGGCGCACCGTCAT 4960536 29 100.0 32 ............................. CCGCAGTCGTCGACGGGGATCTCGGCGGTCGG 4960475 29 100.0 32 ............................. CGCTGGACATCGGCGTCGGCGACCACGTCCTG 4960414 29 100.0 32 ............................. GTGCTCGCCGCACCGGGGGCCCTGTACGCCTC 4960353 29 100.0 32 ............................. AGTGAGACATGCCCATAGAGCAGCCATTACTC 4960292 29 82.8 0 ...........GAA........C.G.... | ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.7 32 GTGCTCCCCGCAGGCGCGGGGATGATCCG # Left flank : CTGAGCTGCGGTTCGATAGGTAGAGCTGGACGGTGGTCGCGCGGGTTGCACGGACTTGGTTTTCGGATTCGGCGGGCACATCGGGAGCGTGCGGACTATCTGCTGTTTCGTGGTTGTTCGGGTCTGGTTTTCGGGTCGCGGGTTGCGTCGGCTACCGGGGAGGTGCCGGTGCGCGAAGATGACCGCATGGTCGACTTGGTCAAGTTCCTGCGGGGCCGCAACGAGGATGGCAACCATGCCTACGCCGAGGTGGCCCACCGCTTCGGCGGTGACGTCCTCCTCGACAGCCACCTGCCGATGCTCGACCTGGTAGACATGCTGGCCAGGCAGTACGAAGCGACGGATCCGGCGGATGTACGCCACGCTGGTCTCGCGTACGCGAGACCAGCGTGCTAGTGCAGTCCCCAGCGGACACCGGCATGGATGGACGGTGCAGGATCCCCGCAGGCAAAACGAAGCAGTTCAGGCTGGGAGCGCGTTATCATCGCAGGTCAGCAAGT # Right flank : AACCAGCGCGGGCCTGGTCCACGTGGCGGTGTTCCGTGCGGGTGCGGAGATTATCGGGTACTGGCGGGGGATGACTTTTCGAGCTTTGGTGCTCGCGCACTATGGTGCCCCGAGTCCGAATTTCGGGTGTATCCATCGTTGTGCCTGTGAGCTGGCTACCGGAGTCGGTGTGGTCGCGATTTTGTCGGTGCCTCGTGCAATAGTGCGCCCTTCGTGTGATGGGGAGGGGAGAGGTGCTGATGGGGCAGGTGTCGTTGAGTGCTTCCGCGCGATCAGTGTGGGCGAAGTCGGTGGATGAGGCTGGTGATTGGTTGCCGTTGTGGCAGCACATGGACGATTCGGCTGATGTTGTGGCCGGCTTGTTCAGGAACTGGATACCGGCAAGCGTCGTGGGTTTGCTCGCGATGGAGTTCGACGGAGATATTGATCAGTGTCGGGCTGCGGTGAGGTTTCTTGCCGGTGTGCATGATCTGGGCAAGGCGACGCCTGCGTTTGCGGTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCAGGCGCGGGGCTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //