Array 1 941222-942407 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016357.1 Salmonella enterica subsp. enterica serovar Newport str. WA_14882 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 941222 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 941283 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 941344 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 941405 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 941466 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 941527 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 941588 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 941649 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 941710 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 941771 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 941832 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 941893 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 941954 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 942015 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 942076 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 942137 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 942198 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 942259 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 942320 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 942380 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 959077-960631 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016357.1 Salmonella enterica subsp. enterica serovar Newport str. WA_14882 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 959077 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 959138 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 959199 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 959260 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 959321 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 959382 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 959443 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 959504 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 959565 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 959626 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 959687 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 959748 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 959809 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 959870 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 959931 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 959992 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 960053 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 960114 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 960175 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 960236 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 960297 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 960358 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 960419 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 960480 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 960541 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 960602 29 100.0 0 ............................. | A [960629] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //