Array 1 695068-696952 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822034.1 Streptococcus thermophilus isolate STH_CIRM_1049 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 695068 36 100.0 31 .................................... TCAGGAATCTCATTGAAACCAACTTCAAGAC 695135 36 100.0 30 .................................... ATGGTATCATAGGAAAACAAAAAAAGACTA 695201 36 100.0 31 .................................... TTTTAAATAATTTAAATAATTGTTGAAAATA 695268 36 100.0 30 .................................... AATCAAGTTAAAGGTTCATTCTCTAATGCA 695334 36 100.0 30 .................................... CAACTTGGGCGGGTTTGATTGAAAAAAAGA 695400 36 100.0 30 .................................... TCGTATAAATTATTACGATTCTACTGGTAA 695466 36 100.0 30 .................................... TAAAAAGCAGGACTTCACACCGCAATCGGT 695532 36 100.0 30 .................................... AGCTGTTCCTTCTTGAACATATCATAATAA 695598 36 100.0 30 .................................... ATTCTAACTTGCTACCAGCAATGCAAGATA 695664 36 100.0 30 .................................... CCAACTTTAGTCTATCAATTAGTGATTACT 695730 36 100.0 30 .................................... GCCAAAACAGTGTTACCGTCAGCGAGACCC 695796 36 100.0 30 .................................... CTCTAAAGGCAAAGAAAGAGATTGGCGAGG 695862 36 100.0 30 .................................... ATCATTTCTAGTTTAGGGTTATTAAAGGCA 695928 36 100.0 30 .................................... TAAATGGATAGTTTCCATTGGCTACATTAA 695994 36 100.0 30 .................................... TGTTATCGTTGTTTCCTTGTGGTGCGTCTC 696060 36 100.0 30 .................................... CTTTTTGTTCCCACCTTTGACCATATCAGA 696126 36 100.0 30 .................................... TGGAGTCCCGGAAATCTAGACATTGGTAGT 696192 36 100.0 30 .................................... AGAAACACTTTTTGAAATTAAAACAAAAAG 696258 36 100.0 30 .................................... TTATTCTTGGAATTATTACAGACCCTACTA 696324 36 100.0 30 .................................... GCTTTCATTATATCACTTACTCATAAATCT 696390 36 100.0 29 .................................... TTTTCGCAAAGTAAGCGAAGCTCTACGTG 696455 36 100.0 30 .................................... TAATCACCCCTTTTTCTAGCTCTTGATTGA 696521 36 100.0 30 .................................... AAGTTGATCGTATCTATTTAGAATATCGCA 696587 36 100.0 30 .................................... CATAGTATAGCCGTCTTCTTTGATTGATTG 696653 36 100.0 30 .................................... ATTCACTTTGACAGATACTAATGCTACATC 696719 36 100.0 30 .................................... CAAGCAGTGTAAAGGTGGTTTAAATGTTAA 696785 36 100.0 30 .................................... CCATGGGTGCTAAAGGTGATGACTACCGCT 696851 36 100.0 30 .................................... AAATGAACAGACAAGAAGCAACAGAAATTG 696917 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTACGATATTGAGTTTATGTATGAAAGGGTAAAGAAACACTATCCAAGTAATAATTTTCCAATGAGAGAAGGTTTTAGGATGTCCTTAGAGACTGTGACGCCTTATTTATTAACAAAAATGACGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTAAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAATAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1389389-1387044 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822034.1 Streptococcus thermophilus isolate STH_CIRM_1049 chromosome STHERMO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1389388 36 100.0 30 .................................... GGTTGACCCAAAAACCCAACAACTTATTAA 1389322 36 100.0 30 .................................... TTAATTGTACTGCCGAACCGCTTAATTAAT 1389256 36 100.0 30 .................................... GAAAAGAAATCGCGATTTCTATATTACCCT 1389190 36 100.0 30 .................................... TAAATCCACTGACCAATACTTATGCAAGGT 1389124 36 100.0 30 .................................... TGGTTTATATAGAAAACGGCAACTTGGATA 1389058 36 100.0 30 .................................... CCAAACAATTACTGTTAGACATGCTGATGA 1388992 36 100.0 30 .................................... ATGTTATTCTTTTGATTCTTTTGAAGTTCT 1388926 36 100.0 30 .................................... GGCAAGTTCAGGTGGAGCTGGAGGTCATGT 1388860 36 100.0 30 .................................... TTTAATAACAACTATCAAGAACAAGGTCAT 1388794 36 100.0 29 .................................... TTTTTCTGCTCTTGATGAAATGGGACATC 1388729 36 100.0 30 .................................... TAGTTTTATGTATTTGTGGGGTTTCGGAAT 1388663 36 100.0 30 .................................... ACCACGACATAGTTCTCTTGTTTGTCCTTT 1388597 36 100.0 30 .................................... CGCTATCTCGGACGCCAAAATCAAGGAAAG 1388531 36 100.0 30 .................................... AGAGGGTTGGCTTAAAACGGTAGCTAGTAT 1388465 36 100.0 30 .................................... TGATGGCATTAATAAACTGATTTCCGATTT 1388399 36 100.0 30 .................................... ATCAAGTTTGTTTGCATCGCTAATCCACTT 1388333 36 100.0 30 .................................... GGAATTAAGCAAGAAAGAGCATATTGACGA 1388267 36 100.0 30 .................................... TTCAGGTGTCTTTTCTGCCTTCGCTGAATA 1388201 36 100.0 30 .................................... CAAGTCAAGACCACATTATCAAACTAGACA 1388135 36 100.0 30 .................................... GTTGATTATGCGTACCATTAATAACTTTAT 1388069 36 100.0 30 .................................... ACCTCTATAGGAAAATTCTTCTCAGATACG 1388003 36 100.0 30 .................................... AAAGTACTCAAAGGAGAAAAAACTCAAAGT 1387937 36 100.0 30 .................................... ATCAAGGTTGTTAAATTCAAAAGCAACCGT 1387871 36 100.0 30 .................................... CGCTATCTCGGACGCCAAAATCAAGGAAAG 1387805 36 100.0 30 .................................... AGCTAGTGCCTGAGCCTTGCCAATAAGGGA 1387739 36 100.0 30 .................................... GCTACGACCTTCATTTTCTTGTAAATATGA 1387673 36 100.0 30 .................................... TAGAGGTAATGATGGTATTGCAGGTAAGGA 1387607 36 100.0 30 .................................... CAAGGATGGAGGCGTTTGAGACAAGTTTGT 1387541 36 100.0 30 .................................... TATCTTATTTATCTATTTCATTGAGTTTGG 1387475 36 100.0 30 .................................... TGCAAAAGTAGACTATGTTCTTGACTTAGT 1387409 36 100.0 30 .................................... CTGAAGCAGTAGAGAACTCTACTTGGAACT 1387343 36 100.0 30 .................................... CATTTGATGGGAATTTAAGTCAGCTTGGTT 1387277 36 100.0 30 .................................... TTGAGAGTAGATGACACGATTCAATTCTAT 1387211 36 100.0 30 .................................... CCTTAATGCCAATGGTATTTTGAAGATTAA 1387145 36 100.0 30 .................................... AATTACAAAAGTCGAGTTGGCTGAAAAAAT 1387079 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 36 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATGATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGATAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //