Array 1 127463-126920 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQK010000010.1 Calothrix sp. FACHB-1219 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 127462 37 100.0 36 ..................................... CTTCTTCTTTGGTAAGTAAAGGATATCTACCAGCAG 127389 37 100.0 35 ..................................... TGTGAAAGAAGATGCTCTCAAACTTGCTGCATGGA 127317 37 100.0 37 ..................................... AAGAGCAGTAATGGGGAGCAGGCTTGAAATCTATTTT 127243 37 100.0 36 ..................................... TGTTTTTGCCTGATTTAAAGCTGCTGCACCTTGGAT 127170 37 100.0 34 ..................................... ATCTTGAAGTTGATACAGAAGATTTAAAAAAAGC 127099 37 100.0 36 ..................................... ATTTTCATCTTGCAGTTTAGGAGAGATGCCAAGGTT 127026 37 100.0 33 ..................................... ACATATTCAACGCTTAATCGTTGGGAAAATAAA 126956 37 78.4 0 ...A........A...A.TG........A...T...T | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 97.3 35 GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : CTGTGAGTAAAGCCCAATCGGAAGTCATGCCCCAGGAATTTGCTAAATTGACAGTACCAGTACTGTTAGTTGCGGGGGAGTATGACAAGATTATTCCGGCTGCAATGGGGCGACAAGCTGCGGCGATGAATGATAAGGTTGAGTTTGCGATGATTCCCGATACAGCGCATTTCCCTATGTTAGAAGATGCGTCTACTTACCTGCGGCGTGTTGGGGAGTTTTTGCAAATTCCCATAGGAGTTGATTAAGGAAATGACGATTTTCTATGCTGAATGCGCGGATGGGTAGGTGTGGAAAATAGGATTTTGGCACACATAGCTGAAACTCCTTATCTGTAAGACTTTCACAGATTAATTACTTATCTATCGCCCGCGCACCTTACACAGCAAGGCTTTCAGCGATTTTTGGTTTGCTTGTTCTCTATTGCTTGTGTTATGATTTACTCGTCCGCGCACCAGAACCTTGAAAACCTCATATTGCTTAACTTTCAGGCTTCCGCA # Right flank : TTATTAATTTCTTAATTCCTCAATTCCTTCACTTTTAAAACCTCATCTAACCAAGCTAAATTTTCTGGTGAAATCCCAGGTACAGGTTCTTGACTATAATCAATCACTAAATCATAATTACCTTCATCGTAGAGTTCACTAATTAAGGTTTGAATATCTACTAAAGGTTCTGTATCACCTTCACGTAAAGGTAACAGAAAAGAAGGTATAGGATTTGGTAAATTAAATGGATATAAATCGGCTTTAGGACGTTTGGTGGCACTACTTACCAAGATTCTATAGTCAGTTTGCAAATTATTTTGTAGTTGCTGTATTGGCTTTCCATCTCGCAGCAAATCAATTTCTACTAAATTGGTATAACTTCCTAAAACTTGTAACCGCTTTTTTGTATATGCATTTCGTCCTTCACCTGGACGTTTGTTTTTTGGCGAGAGAATTTCAATTATAGTTACGACTTCTTGCGTAGCTACATCTCTCACTTCTAAGTAAGTCTCTTTGAC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 188265-189180 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQK010000009.1 Calothrix sp. FACHB-1219 contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 188265 37 100.0 35 ..................................... AAGCCTTGCAGGTGTAGAGTTGCGGCAATTGCCGT 188337 37 100.0 37 ..................................... ATTTCACCCAGCAATGCAGTTGTGATGGAAGCACACC 188411 37 100.0 38 ..................................... GTAATTGATTGTATCTAAAACGGTTTGTCCCAACTCTT 188486 37 100.0 36 ..................................... AATTTTGAGTCGCTGCTCTCTGCTTTTACGCTCATA 188559 37 100.0 34 ..................................... TCCCATTATCCTTACGAAATTCACACGTACTAGA 188630 37 100.0 38 ..................................... TCAAATAAATTTAGACTAGTGATTCTAAAACCTTGCTG 188705 37 97.3 36 ................................A.... AATTCTGACTGGTTTTCACTACCATCATTATTATCT 188778 37 100.0 35 ..................................... TTACAGGGTTATCTAGATATTGAGATGATTGTGCA 188850 37 100.0 35 ..................................... AAGTTATTGCTTGGGGCTTGTCCTGCAACGATTAC 188922 37 100.0 36 ..................................... GTTTCTGTTGCTCGATCATTTGGCGTTGGTGTTGCG 188995 37 97.3 36 ..........C.......................... TTGACTTTATGGATAAAATTTCACTTATATATTTAC 189068 37 97.3 40 ..........C.......................... GCAACTTCGGCAGGTGTCATGCCTGATTTTTTCCACATCG 189145 36 94.6 0 ..............................-.....A | ========== ====== ====== ====== ===================================== ======================================== ================== 13 37 99.0 36 GTTTCAAATATCTATTACCCCGCAAGGGGATTGAAAC # Left flank : GCTGCTCGCACTACGGAATATGGGTAATTTATTTTTTGTAAGTCCCTTAGTTAATACCAATTGGCTGTCATTTATCATTTGTCATTTGTCATTGGTAAAGATTTTGTAACATACAGCATATTTGCAGGTAAATGAGGTACGCGCTTTGGGGCATGGCAGTGCCAATGCCCCTACAATCAATGATTATCTGGACTTCTCCAACTGGCAATCTGCTGTATTTTCTGTAAATTTCCTAATGCTTCTGAAATTTCGGTAGTATATTTGATATCATCCTAATTATTGATGTGTTAGCTTGATGTTTGGCAAACCGAAGCGGGGGCAAAAACCTGGGGGGTTCTGCCAAAAACGCCAGAACCTTGACAAATTAATAAGTTCAGCCTTTGGAGATTTGGCACAGTTGCAAATTGATTGCAATAAGGTTGTCTGAAAATAACCATTTTTTTCGATCTGCCAAAACCTCTCACAAGATGGTTGCTGTGTATGGGTTTCAGCACTAAGCA # Right flank : ATCAGCCGCTTACGACGTATATTTTTTACTTTCTTAAATGCTAAACAACGAACTTAACTTTAAATCTCTTCCCTTCTGTTATTTGCTTTTATGCAAAAAATATCCTGAAAAAAGGAAGCACCTGATAACTGTGGAGTTCTGGAAGGAATTAAATCGTTAAATTAAGCAGATTCAAACACGCCAGGTGGAATTGGTACGAGTTGAGGAGACGACAAGCAAGTTCCTTGACGATACCATATTCCTTCAGTCTCGAAGATCTCAAATTGAGTGGTCAAAATTGCCCATGCTTGTTCATTGAGACCGGCTGAATAAGTCCAAGTAAATTGTTGATGACTTTGTAATCGCTTTTCCAACTCGTGTAAATCTTCTGGTAGCCAGAATTTAGACATTGACCGTTGAGTCGCAATCTCAGCAGGAGTTTGCAACATTTCAATCATTGGCTGATTGACAATGATTTGCTGGCGGGTGTCTTGTCTGACAATGCTGACAGGAAGTTCATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATATCTATTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 211461-211146 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQK010000009.1 Calothrix sp. FACHB-1219 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 211460 36 100.0 34 .................................... GTGATGTTAATAACTAGACACTTCCATAAATTTC 211390 36 97.2 38 .....................A.............. ATTGCACCTTGAACACGCACGCCATTTTTCTGCATTTC 211316 36 100.0 36 .................................... GAGAATGTCTCTATGGTCTCCAGAATGGGCATGATG 211244 36 100.0 25 .................................... GAAAGGGAGGAGGGCACGGCAATGC 211183 36 80.6 0 .GA.G.C.C.........G.............G... | TT [211168] ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 95.6 34 CTTTACACTTACCTCGCCCCGCAAGGGGATGGAAAC # Left flank : CCAAACTACAACTGAAAGCCTAGCGTATAAGAAAAGCGATCGCATTACATAACTCGTTTCCTGATGAAGAGACATCCAATTTTTTAAATACCCAAATAAATTTGTAGTGCGAGCATCTTGCTCGCTTTTGAACACCGGCGAGCAAGATGCTCGCACTACGAAATATGGGTAATTTATTTTTTGTAAGTCCCAAAATCTGATTGCGATGCTTAAATTTAACAGAAATCACCCGTTACTTGTAACAAATCAGTCACAAATTTGACTTAATTAGCTCAAAAATTCTATATTAAAAATAGTTTGTGTCGCTCATCGACACCACTCACCAGAACCTTGAAAATCGCATAATTTCGTTAACTGGTGTCGATTGCTTGCACAGCCAAGTTTCCAGGCTGTGAAATGCCTAAATTATTGATAATTTCTCTGGCTTATTGACATTTTAAAAAGTGGTGTAGATTAGGGGGTCTCAAACTCTCTCCCCGCAAGGCTTCCAGAATTGAACT # Right flank : AAAAAAGAACCCCGTGAAGGGATGAAAGATAATTGAAAATTAGAGCGATCGCACCAAAGCCGGTTTATTGTTGAAGTGTTGACTTTTAAACATATCGCAAAAGTCTAACAATAAGCTACCATATCCCCTAATTCCTGTTGGGTCTTTATGTGGGGAGTCGTACAAGTTCAGTATGAGTACAATCGAAGATATCAAAACTCAAAGCGCCAGTCATCTACAAGCGATCGCAGCACAATTTACACTTAAAGGTAAAGTTAGAGATATTCAAGCTTTTGGCAGTGGTAATATTAATGACACTTTTTTAGTTACCTTAGATGGGGAAACTGAACAAAATTTTGTGTTGCAACGCATTAATACACAAGTATTTCGTCAGCCAGAATTGATTATGCATAACATGTGTACTTTCACTGAGCATATTCGCCAACGGCTACAAAAGCAACCACTCAACCGACGCTGGGAAGTACCGCGAGTACTTTTTACCCAAGGTGGAAAAGATAATT # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.09, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACACTTACCTCGCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 218871-217899 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQK010000009.1 Calothrix sp. FACHB-1219 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 218870 36 100.0 37 .................................... GTTGAACATGATGCATAGAATTTTCTGGTCATGCTCA 218797 36 100.0 31 .................................... AGTTGGTTATTAACAACTATCTCAGAAATTC 218730 36 100.0 32 .................................... AGAAACAGTACCTCCAAGTGAAACTCCGTTTC 218662 36 100.0 38 .................................... GCAGTAGCGATTTGCTCTTGCTGCTGCTTTTGTTGAGC 218588 36 100.0 36 .................................... TCAATGCAACAAGAAATCGCATTATCACACCACACC 218516 36 100.0 38 .................................... TTTGAAGTTTGTCCATTATATACATTACGGACAAACAA 218442 36 100.0 37 .................................... AGCAAGGTTTCTTTGGGTCGCTGTTTCAGAGACTACA 218369 36 100.0 35 .................................... TTTGAGAGTACTGATTAAGAGAATGGTTCAATTGG 218298 36 100.0 37 .................................... GCAAGAGGGCATTAAAAACCCGATACTGAATTACTGG 218225 36 100.0 35 .................................... GAAACGGAACGGACTTGCGCGATCACTTCGTTAGA 218154 36 100.0 35 .................................... AATGAGCTAGATATAATCCAGCTACCGGACGTAAA 218083 36 100.0 34 .................................... TCGCTACCCGGACGTTTAGCCAGAACAAACTGAC 218013 36 97.2 39 ....C............................... ATGAACCTACACCAATAATAGAGAGAGCGATTTAAATTC 217938 36 77.8 0 ....C..A.......A...G.A.....T....T..T | TC,TA [217904,217910] ========== ====== ====== ====== ==================================== ======================================= ================== 14 36 98.2 36 CTTTACACTTACCTCGCCCCGCAAGGGGATGGAAAC # Left flank : ACTACAAAATCGTTAAAGCCTAGCGTATAAGAAAAGCGATCGCATTACATAACTCGGTTCCTAATAAAGAGACATCCAATTTTTTAAATACCCAAATAAATTTGTAGCGCGAGCATCTTGCTCGCTGGTGTTCAAAAGCGAGCAAGATGCTCGCACTAAGAAATATGGGTAATTTATTTTTTGTAAGTCCCGAAATCTGACTGCGATGCTTAAATTTAATAGAAATTACCCGTTACTTGTAACAAATCAGTAACAAATTTGACTTAATTAGCTTAAAAATTCTATATTAAAAATAGTTTGTGTCGCTCATCGACACCACTCACCAGAACCTTGAAAACCGCATAACTTCGTTGACTGGTGTCGATTGCTTGCACAGCCAAGTTTCCAGGCTGTGAAATGCATTAATTATTGATAATTTCTCTGGCTTATTGACATTAAAAAAAGTGGTGTCGATTGGTGGGTCTAAAACTCTCTCCGCGCAAGGCTTCCAGAAGTGAACT # Right flank : TGATCGATAAGACTCCTGGCTGATCCCGAAATCCCGCCGTCACCCTAGAAGGGTGCGGCTAATCGAACAAAGCCCACCTTTGTGGGCTAAAAAATTCAGTCCACGTAGGTGGGCTTGGTAGCTGTAGCCCCAGGCTTCTAGCCTGCGGGCGTTATTTCGGGTAAGCTTTTATTTCTAACTCCCCAAGAGCGATCGCATTTGATAAATTGAGTATCTACTTTAAAGCAAAAAGAGCGATCGCATTCTTCCCCCTCTGCTCCCTGCCCCCTGCCCCCTGCCCCCCTGCTTTCATCCCAAGCTCAGTCTAAAGAAAGATCCTGGTTTGGTGGAATTCGGATTAAATAGAAAAAACCGTGTACGCCTACGGGTAAAGGGAAATGAAGCGCGACTCTACTGGTAAGTTTGTCAGGAATTGGGAATTAGAAAGCAAACAACGGGTTAGTGTCACGCTTACCAGTACAGCATGGCGATCGCTCGATGCAGCAGCACAAAAGCAAGGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACACTTACCTCGCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 182234-181539 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQK010000013.1 Calothrix sp. FACHB-1219 contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 182233 37 100.0 37 ..................................... GCTCATCCTGGGGCGGGTGTGGATGATTTTTAAGATA 182159 37 100.0 37 ..................................... TAGCGATATGCGTACTGGACAAGCTTATCGCTGTGGT 182085 37 100.0 35 ..................................... AATAATTCCGCGTTCAGTGCGATAAACACGGTTTA 182013 37 100.0 35 ..................................... TTGTTATTCCCCCTGGTTCTGGTTTGCAGCTTATT 181941 37 100.0 35 ..................................... CCACTACTGGCGCGGGTTCAATAGGAACAACGGGA 181869 37 100.0 36 ..................................... AAATCAAAGAGCTTTGATTAGATGAATCTAGCCAAG 181796 37 100.0 35 ..................................... TAACGTTGACCGATTTCTTCCCTAGCGGCTTCTAA 181724 37 100.0 37 ..................................... AGGCGATCGCCTCTCACAAACTTTCACCCCACGCCAA 181650 37 100.0 38 ..................................... TCGAACTTGAGGCGATCGCTCACCTCATGCACCTCGAA 181575 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 99.7 36 GTTTCCGCAACCAATTACCCCGCAAGGGGATTGAAAC # Left flank : CGGGTATTTCTCTTTGTTCTTGCGGAAAAACGCCCATATCTGCAATTGCTTTAGTTTCCGATACAAGCAAGCAAGAGCTAAAAAATAAAACGGCTGTCATCAGTGTCTTTTTTGTAGCTATCATCACAATTATGGCTATTATCTGATTGTGGAAAAGATACGTAGTAGCGTAGCACGCCACTACAATTATGTTAACCGTCAAGTTGTACTTTTAAGTTAAGCTAGGCTTTGGATAAATTCGTCAAACAGGCTAGACAAGATATGTCAGTAGTATTATGATGAATGTATTAACTTGATGTTTGGCAAATCGAAGCGGGGGCAAAAACCCTATAGGTTCTGCCAAAATCGCCAGAACCTTGACAAGTAAATAGTTACAGCGTTTCGAGAATTGGAGAAGATGCAAATTATTTGCAATAAGGTAGGCTGAAAACGATTAAAATTTTCGATCTGCCAAAATGCTTCTCAGGATGCTTGCTGTGGTTAGGTTTCAATACCCAGCA # Right flank : AATACATTGGCTAAACAAGAAATGACTAACGCTCAAGGAAAAGAAAAATAAATGTAGGTTGGGTTGAACGGAGTGAAACCCAACAATACCAAAGTTTTCGCGTTGGGTTTCGTTCCTCAACCCAACCTACAGCTACATTGGTAAAAGCCTTGAAAAATAAGCGGTTTGAGATTTTTATTTGGTGAAAGTGATTAAAGAGGGTTAAAAAGAGCGATCGCAATCACGATAAATATTGTTGTTCTTAAAACTTCTGAATCTCCGTGTCCTCTGCGTCTCTGTGGTTCAATTAAATAGTTTTAAACCGCAGAGTACGCAGAGATCGCAGAGTGGCTATTTTATAACTGTCGAGTGTTGTGACAAAGCATGTAAATCTATGTTTAGTAATATTACTGAAAATATCAAGGCTTTACTAAAGCGTTACATCAGAAAAATTGGGTAGTAACTGGGTAGTAATTGGGTAGTTTTACCCTATATAACTACCGGAGATTTATCCATAATAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGCAACCAATTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : NA // Array 1 221609-221065 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQK010000011.1 Calothrix sp. FACHB-1219 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 221608 37 100.0 35 ..................................... GACTAGCTGGATCATTCCATCAAATCGCTCGATAA 221536 37 100.0 35 ..................................... CATAAATATATTCCATAGTTGGTACTTGTTTAATC 221464 37 100.0 36 ..................................... CTAATCCAGTAAGTTTAACAGCACAAAGATATCAAG 221391 37 100.0 33 ..................................... GATACTATTGATTTTGAAGATACAGACATCTTG 221321 37 100.0 35 ..................................... GCCTGAATGTGGTCGTGTAATCCATCCATGTACGC 221249 37 100.0 38 ..................................... TGGCAATAGTCAAGTAAGTGGCAGTAGTGGTTTTATTC 221174 37 100.0 36 ..................................... AATATCCCCAACGAGCAGCAGCTAGATAATAATTGG 221101 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 99.7 36 CTTTCAAATTAATGAAACCCGGCAACGGGATTGAAAC # Left flank : GGCCCCGCGATCGCAGCTGATAAAGGTATGTTTCCCAGCACCCACACACCAATACAAGGTTTGTACCGCGTTGGTGACAGCACCATACCCGGAATTGGTGTCCCCGCAGTCGCCGCATCTGGGATTTTATGCGCGAATACTTTAGTCTAGGGGCATGGGGCATGGGGCATGGGGCATGGGGCTAGAGAAGAGATATTTTCAAGTTTGATTGTGAGATTTGCTCGGAAATGACTAGCGTGAAGTTTTTGGCAACCTCGACAACAAGAAATAATCGTATTATGATGTCACCATCTAGTTGGTAAAGCGTTTTTTTGGCATGGGAAAGCGCGGGCGAAAACCCCCCACCTCCCGCAAAATCGTCAGAACCTTGATAATTAAATAGTTTCAGCGTTTAGAGTAATGTTTAGCTCGCTGTTGACAACGGCTGAAATGGACTTTTAAAATAGTCCCGCCAAAATTGCTTCTAGAATTTTGTCTGTGACTAGGTTCTGGCTGGCGGA # Right flank : GTGATTGCTGCTATATCAGCATTTTACCCAACAGCAAAATCTGTAAACTGTCTTTTATAAGGTGAGTGAAATCCTAAAACAATATCTTGCTTAGGAACGCCTAAAGCTACTAATTCATCAGCAATATTGGCTTCTGTGCCATTATGCTGAATCCAAATTTTTTCATTTTTAATATCTAAATGCAAAACACAACCATATACACGCCGTTTGTTTTTCCAACCAACATATACTAATTGATAATGGTCGTGTTCGCTATCAAATATAGTTTGTGCCTCTACCTGATTGTCAGATTTATAGTACAGGCTATATTCTGTTAATACCTGCTTTATATATTTTCTATATTCTTCTAATTTAGCCATTGGACGATTACCTCATTGTCAATGTCATAAATTACTAATATTAATTGATATTGTTGAATAATCATTTGCGTAAATGGCAACTGAAAAAAAGTTTCATAGGCATCTAAAGGAACTTATATTATCTATTTTCTCAAGCTCCAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATTAATGAAACCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 125485-124708 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQK010000018.1 Calothrix sp. FACHB-1219 contig18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 125484 36 100.0 35 .................................... CTCATCTAAATGAGTTGCATGACCTAACTCATGAA 125413 36 100.0 36 .................................... TGGTATGTGCCTTCCACGCCGTATTTACGTGCAGCA 125341 36 100.0 35 .................................... TTCCAGCAAAACGAAATACTGAGCATCACCAGTAT 125270 36 100.0 40 .................................... TCAAGATCATACTTAGCGTTTACTAAACTTAGTCCAATAA 125194 36 100.0 42 .................................... TTAACGTCCTCGCCTCTAACCAGCTTTGCGATCGCACTAGCA 125116 36 97.2 37 ............C....................... GGCTTTACCATATCTACATTATCTTGACCATCGTTAA 125043 36 97.2 37 ............C....................... GACTTAAGCTTAATTATTTCACCAAGCTTAATTTTAA 124970 36 94.4 43 .........G..C....................... CTAACAATGTCGTAGATTTCAGGAATGTAAACAGACATTTTCA 124891 36 97.2 37 ............C....................... TCTACGCAACACGACAACCGCAACACAAATGTGAAGC 124818 36 97.2 39 ............C....................... ACACAAGCATCTGCATCAGTCATTGTGGTTACAAATGTA 124743 36 86.1 0 .........G..C.................TA...A | ========== ====== ====== ====== ==================================== =========================================== ================== 11 36 97.2 38 GTTACAGTTACCTTTACCCCGCAAGGGGATGGAAAC # Left flank : AAGTTAACCGAGAAGGAACCGAAGCAAGCTAGTTCTCTCCATGAGGGACAGGTGGTGAAGGTGAAAATTTCGGCTGTTAAGGATGATGGGACGATTAAAAGCGTGAAGTATGTAAGTTAACTCAGTATTGCTGCTTTAAGTTTTGTATAGGTAAGGCTTGACGAATATATGTCTGTGAATTATGTTGTTTACATTGCAAATTTTTAGTTAAGTCTTACGTGCTTTCTCTAGGCTTAATAGAGAACAGAACCTTGAAAATTGCATAAATATCTTGGTTGTTAGGGTAGATTTCCATACTACCCTGAAAGGAAAAAGCGGTTTTGCGGCCGATCCGTCAAATCGCTGAAACCCTAGTTTTTTCGTAGACCCTGCCGATTGCTTATTCTGTAAGGCTTTCAGGGATTTTTTCTGGTTATTTTTGGACGGGAGAAAAATAAAATGAGTACCCCGTCGCAAACCGCCTCTGGAAGCTATAGGTGATATGGGTTTCAAGGCTAGGG # Right flank : TTAGGTATGATATTTATTCAGATTGTTAGCCTATAAACTTAGGTTGAAAAAGAGCGATCGCATTTCCTTGAAATTTTCTAATTGATTGGTAGAAATAGGAATCTCTGAAGGAAAATAATCTGATTAAATTATGTGAGATTAATTTAATTAATGATTGTGTGTTGTGGATTGTCGTTCAGGGTGGGGAGACTCTGGCGGGGAGGGGCGGGGTCTCCCCCATTGGTGTCAACTTAACGTGAAACCCCCATTCCATCTAGCTCCCATGCTCTGCGTGGGAGCTTAGATTTATGAGGCTCTGCCTCAATTTATCAGAAGACGAGGCGGAGCCTCGCAATCCGCATTTCCAGCCTCTGGCTGGAAACGAGATAAATGGATGGTAGGGGCATGGCACTGCCATGCCCTCTAGAATATATTGATGTGCCGCAAAAGCTATTTAAATGGATATCACCTCGCATACCCGAAATATCGCCGTCACCCTAGAAGGGTGCGGCTAATTCTAC # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGTTACCTTTACCCCGCAAGGGGATGGAAAC # Alternate repeat : GTTACAGTTACCCTTACCCCGCAAGGGGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 21784-23945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQK010000025.1 Calothrix sp. FACHB-1219 contig25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 21784 37 100.0 37 ..................................... TAGCCCGCATATAGTCATCTACGGGCATCCCAATTAA 21858 37 100.0 37 ..................................... ATTTCTGGCATTGTGATTGGGTCAAGGCTGGCAATTC 21932 37 100.0 36 ..................................... GATGATATGCTTTATGTTTGTATATCATCCACTAGC 22005 37 100.0 36 ..................................... TTCGTGAGGGAATGACAAGCACTGGTGTAGAACAAG 22078 37 100.0 35 ..................................... CAGCGTTATTAATTCAGGTATTTTTGCTCAAGAAT 22150 37 100.0 35 ..................................... ATTGAATAAATTGAAAGCCGCCGCCGCCGCCGCTT 22222 37 100.0 39 ..................................... TTGCAAAGACAAATTGGCGCAGCCGAAGACCAACTCAAA 22298 37 100.0 40 ..................................... CTTGTTTCATATTTAAGTGGTTGAATTTTTGCGCCCCGAA 22375 37 100.0 35 ..................................... CTGATTTATTTAATTTTGCGGCAACACAGGACTGG 22447 37 100.0 35 ..................................... ATTAGCGACAACGTCATACATTTCGCAGGCGCTAG 22519 37 100.0 36 ..................................... CTTCATCCAGATCTAAGGAGTACTGGGCTTCCCAGT 22592 37 100.0 36 ..................................... CTATTTTTAATTGTCCTAATCCTTATCCTTCTGGGG 22665 37 100.0 35 ..................................... TCCGCGATCGCGTTAATGCACCAGAAAATTTTACA 22737 37 100.0 35 ..................................... GACTACAATTTTCAAAAACTACTAAAATGCTTGAA 22809 37 100.0 38 ..................................... TTACGCCATTATCACAACAGATTAAAGACCAAGCGACT 22884 37 100.0 36 ..................................... GACTGCACACATTCAGAAAAAGTTTCAAAGTTTAAC 22957 37 100.0 35 ..................................... CTAATGATTCCACTAGTTGTGGCAGATTCATGGAA 23029 37 100.0 38 ..................................... GATACTAGTAGACATAGAGGGCAAACAAAAAGCGATCG 23104 37 100.0 37 ..................................... TGAGTAGATTTCCTAACACTACTAGATTATGGAATAA 23178 37 100.0 37 ..................................... TTTCTATCTTGAGCGATATGTTTTGATAGCCCTTGTG 23252 37 100.0 36 ..................................... AACCAATCGGCAGTGAAGTTGGCGCGACCACTGCGA 23325 37 100.0 35 ..................................... GCTAAACGGCTAAGACGGTTTAGAGCGGGTACGTA 23397 37 100.0 35 ..................................... ACTTTACCTGATTACGACGGCAGCGATCTGATTCG 23469 37 100.0 36 ..................................... AGTTTTTATCGCGCTTCGCTCTTTCTTCTGCATTGG 23542 37 100.0 37 ..................................... GTCAAAGGATTCGGGCATCAACCGAGACATTACCACT 23616 37 100.0 35 ..................................... ATGAAGCGGAAAGATATTTCACTGGAACTAGCCAA 23688 37 100.0 36 ..................................... TCCTCTAAGAATTTTTTCTTGTCCTGTTCTAACTCA 23761 37 100.0 37 ..................................... AAAACAGAAGTTTAGCACTTAATCGGAGGTTATTCTC 23835 37 100.0 37 ..................................... TCGCAGCAGAAAAAACTCAAACATCCGATTTATCAGA 23909 37 97.3 0 ....................A................ | ========== ====== ====== ====== ===================================== ======================================== ================== 30 37 99.9 36 CTTGAAATGCAGCGAATCCCGGCAACGGGATTGAAAC # Left flank : CTTAAAGAGTTGGATTTGAATGAGTTTTTTACTATTGATGAGGTGGAATTTTTACAGCTTTATTCTTTGGTTGTACGTGCTTTGCGGTTGTGTGACCAAAGGTCTGTACAATTTTAGGTGAGGGGCATGGGGCATTGGGCATTGGGCATTGGGCATTAGGCATTGGGCATGGGGCATTGGGCATTGGGCATTGGGCATGGCGGTGCCAATGCCCCTACTAACTTGCAATTCGCTGTATTTTCTCCAAAGGTCTGGACATTGTTGGAGAATACCCGTATGATGATGCTATTAAATTGATGTTTGGCAAACCGAAGCGGGGGCTAAAACCTGGGGGGTTCTGCCAAAATCGCCAGAACCTTGACAAGTTAATAGTTACAGCGTTTGGAGAATTGCGACAAATAGGAATTTGTTGCAATAAGCGAGGCTGAAATGAGGTCATTTTTGAGGTCTGCCAAATTTGCTTGTGGAATCCTTGCTCTGTAAGGGTTTCAGGCGGCGGT # Right flank : CCAAATATTAAGCAACGCCAAAGCTTGTGTATTGACGCATATAGGGAGCTTGGAAACCAAGAATAATCTCTTGTTTAGGAATTCCCATTGCAACCAATTCCTGAGCGATTTGTATTTCGGTACTATTGTGTTGCACCCAAATTTTGCCATCGATTATGTCTAGATGTAAAACACAGCCATGTACGCGGCGATGTCCAACCCAACCGACACTCATAATTTGATAGCGATCGCGTTCTGTATCAAATATAAGTTGGCAATCAACTTCGCCATTAGCAATCGGAACGCTAGCATACTCAGTCAAAATTTTTTTAATTGCTACTCTATATTGATCTAATTTATCCATTGAGTAATCACCTCGTCGATTGGATCGTAGACAATGCGCTTAATTTGATAGCGTTCTAATGATAGTTGATTTGAACCTAGCTTTTTGCGATAAACCGGGAGCATCCCAAATGTGCAAAAACGCCCTCACCCTATAAGGGTGGGGCTAGAAATGCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATGCAGCGAATCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 2 30958-32984 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQK010000025.1 Calothrix sp. FACHB-1219 contig25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 30958 37 91.9 38 A..C..C.............................. ATTTCACAATCAGTTACTACAGTCCCATCTTGGGCGAT 31033 37 100.0 38 ..................................... GTTAATAAATTTGGATCGCTTGCTTCAATAATCCCTTC 31108 37 100.0 35 ..................................... TTACTTTCTGCTTCTTGTGCCTTTAAAACATCCGG 31180 37 100.0 36 ..................................... TATTTGGGGATGGAGCGTATTGCTTTGAAAATATTA 31253 37 100.0 34 ..................................... AGATAATTGAAATCCATACAACCTTGTCACCATG 31324 37 100.0 37 ..................................... AATTTTGCGGCGATACTACAAGCCAGCCTTTACCCTT 31398 37 100.0 40 ..................................... CTTAAAAAGCCTTGAGGCAGCAAATTAGGGTATACACCCG 31475 37 100.0 38 ..................................... AATTAGAAATTGGTAATTAACTGAGGTCAAATTATGAA 31550 37 100.0 37 ..................................... ACAGTTGATCCTAAGAATGAAGAACAGCTAACCGAGG 31624 37 100.0 35 ..................................... CAGAGAAGCCAGTGCTGATTTATTTAATTTTGCGG 31696 37 100.0 36 ..................................... ACAAAATAACCTAAAGCGCATAGCCGGGTCGATCCC 31769 37 100.0 37 ..................................... ACATTTTATCCCTTTGGCTTGTAACGGTCAATACCTC 31843 37 100.0 38 ..................................... CTTGCTGCCACTGGGCGACATATATCGCCCTTGTTCTG 31918 37 100.0 35 ..................................... ACACAAAGAGAAATACCACAAGAGGCCTCTGCCTG 31990 37 100.0 35 ..................................... GATAAAGATTTATCAAGATTACAAGCTTTGCACGA 32062 37 100.0 35 ..................................... TTTTAGCGCTGGCTTTGATGAAATTGGGTTTTACC 32134 37 100.0 36 ..................................... CAGTTACTTGATACAACCTTAACTAGAACTGTTTGG 32207 37 100.0 41 ..................................... TATACATGGTTGGAGAAATGAAGACTTGGAGGAATGTCCAA 32285 37 100.0 37 ..................................... ACACTCGATACTACATCAAAAACCATCGCCCCCGATT 32359 37 100.0 36 ..................................... ATTTAGAAAGGGGGTCTCTAAAACAGGAACCGCCAT 32432 37 100.0 37 ..................................... TACCCATGACGCAAATCATCGAAGCAAGCGCCACTGT 32506 37 100.0 37 ..................................... TAATTTTGGGGCGTGTGTTCCGCTATCTTTATTAATC 32580 37 100.0 34 ..................................... GTCTAACAAAATATCGTCTACATACCTCAAAGTT 32651 37 100.0 38 ..................................... CTCGATAATAGCTTAACTGGTAAATATATCCTTCCAGA 32726 37 100.0 37 ..................................... TTAACTGCTTTCCCTGAATTGAAATCCGCCTGATTAG 32800 37 100.0 36 ..................................... GAGCCAGATTTATCAGAATTCAATGCATGGGTAGCA 32873 37 100.0 38 ..................................... CTTGTGTGTATCCGATGTCAGTCCAAGCACTGCACAGA 32948 37 97.3 0 ...................T................. | ========== ====== ====== ====== ===================================== ========================================= ================== 28 37 99.6 37 CTTGAAACTTAGCGAATCCCGGCAACGGGATTGAAAC # Left flank : GTAATGGTCAACTTAGGTTAGCTCAATATGCAGTTTACAACGATCCTGCACGACGTTTGGAATTAGTCCAAGCAATAGTTACTACCAAAATTCACAATCAATACAACGTACTATATCGCCATAACGAACGGGATAATCCGCTCAAACAACGCAAAACTATGGTTAAAAGCCAAAAAACTATAGACCAGGTGCGGGGAATTGAAGGATTAGCCGCACGAGAGTATTTTGCTTGTTGGCAAAGAATGGTGGGTAAACAATGGACTTTCAACGGTCGCAATCGTAACCCACCTACCGATCCCGTGAATGCATTATTAAGTTTTTCCTATGCTTTGTTGAAAACCCAAGTCACATCTGCGGTTCACCTTGCTGGACTTGACCCTTATATTGGCTATTTACATGAAGTTCATCACGGACAACCAGCAATGGTATTAGATTTGATGGAAGAATTTCGCGCCTTAGTGAGTGACAATGTAGTTTTAGGCTTGTTGGGTAAACGGGAA # Right flank : CGCAAAAAGTTTGAGTACGTTCCATAATTGACTGGTAGCTTGAAATAATAAATGAGGATATCGGTGAACCCGCCCCTACAACAATCAACAGTCAACAGCCAAAACCGATATTTTTCACAACTGAAATAGGATTGCTATCTTGACAATACTGTTGCTAATTCACGAGAATTCAACATTTGTAGAAACTAGAAATTATTAATTATGAATGGTGTTACTTTTGCCCTTGCGTCCTATGGGTACACACATCGGCGTTCCCAAAACTGGATCGGAAATAACACGACACTCTAAAGCAAAAACTTCTTTTACCATCTCCTCTGTCATTACTTGCTTGGGTTCTCCTGCCGTAAAAATTCTTCCTTGTTTCACAGCAACTAGATAATCTGCATAACGACAAGCTTGATTTAAATCATGCAGCACCATGACAATAGTTCTTCCCTGATTCTGGTTCAAATCATATAACAAATCTAAAACTTCTATTTGATGTGCTAAATCTAAAAAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACTTAGCGAATCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA // Array 1 111107-111440 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQK010000029.1 Calothrix sp. FACHB-1219 contig29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 111107 37 97.3 37 A.................................... TTGGTTTTGAATTGCCATATAAAACTCCTACCAGCTT 111181 37 100.0 37 ..................................... TACTAGATGGGCTTAAAAAGCTGTCAGAAACATAAGC 111255 37 100.0 38 ..................................... ACAAAAATATGATGATGGGGTATTTTTGAATCAATGCC 111330 37 100.0 37 ..................................... TTAGCCATGTCGTCTCTTCTCCTGGGCTTTTGATAGC 111404 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 99.5 38 CTTTCAACCCGCCTCAAGCTGTGAGGGGTATTGAAAC # Left flank : GCTAATTATAGCTTTATAGTTAGCTGCTGTTTGCGGGTGTAATTCAGTGGTAGAATGTCACCTTCCCAAGGTGAACGTCGTGGGTTCGAGTCCCATCGCCCGCTTTTGATGCAAATTGTACATTAACTAATTATTTGTCACTGTTAACAGATTAATGTCATTTTTAACAAATTAGCGTCACTGTTAACAAATTAATGTCCTCTTCAACAACTCACTTCCTTTTATTCTATGCTGAACCTGAATTTATCAATGCAAATTTGGACTCAGTCACTGCAAGAATAAAAATTGGGAAGGTGACATTCCTTTCAACCCACCTCTTTATTTTGAACTTTACGCCTGATGTGAATTAGAAACGCCTCTGATCCCATCAGGGTTTCAAGATTCCTTCAAAATCATTGTTTAGGAACTACCTACGAAATTTCAAGGGTTTCAAGGCTTAATTCACATTTAAGGTAATTTGTAATTTTACATAAAAAATGCTACTGGACTATCGTGTGGAT # Right flank : TCTAGCTCTAGGGCGTGTCATCAATTGAGCCAAATGACAGAAGCAGCCAGATAAATTGCACCTAGAAAGTTTGTAGCACGTTTGTCGTAGCGTGTTGCGATCGCTCGG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCTCAAGCTGTGAGGGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 1 259305-259556 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQK010000003.1 Calothrix sp. FACHB-1219 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 259305 36 100.0 36 .................................... AGCAGGGACAATTCCCGATGTCGCGGATGTGACGGA 259377 36 100.0 36 .................................... AGCCGCGACAATCCCAGATTTACCAGACATTCCCGA 259449 36 91.7 36 ...A.......A..T..................... AGCCGCGACAATCCCAGATTTACCAGACATTCCCGA 259521 36 83.3 0 ...A...A...A..T............C.....G.. | ========== ====== ====== ====== ==================================== ==================================== ================== 4 36 93.8 36 ACAGACAGCAGCTGAAGATTTACCTGTGATTGAAAC # Left flank : TCGCCAGAAGCGGAAACAGCAGATAAGGATGTAGACTCAGTACCGACTGCACCACCATCACAACCAACATTTGCAAGTACATCGACTGAGGATGTTAGTATTAATGAAGACAATGCATGGGATACAGAAGCCCCAGCAGCAGTTGTAAATACTTCTTATCCCCATATACCAGAAGCCCCAGCAACTAACAGCGATTTAGCCAAAGAGGAAGAACCATCTCTAAGTACTGAGAATTCTGGAGAGCAAGTAGTAGCATCGGATATCCAAAACGCCGCAGAAGAACAACCGCAGTTAGAGTCTAATAATGTAGATGCGATCGCGTCCATTGGCGGTGCCGCTTTAGGAGGTGCAGCCATAGCAGCTGGTGTTGCTGATGCAGCAGCCAATTCTACCGAGCAAAATACTTCTATCGGTAACAGCAATTATTCTATCTGGGATGCACCAGAGTCTGAATTACCTGTGATGGATACAGCCGGGACAATTCCCACAGATGTTACCGC # Right flank : CAGCAGCAACAATTCCCGATACAGCTGATGTTCAAGACTCAGCATTAGATGCGGTTGCAGATGCAGCAGAATCATTCCCTGACGATACAGAAGAAGAAATCATCGAAATCGTCTCGAATTTCCCAGAACAAACAGCTGAAACATCTGCAAATGCACCAGAAGATGTTTCTCTGGGTAACTTAGGCGCATTAGCTGGTGGCGCAGCCGCCGCAGCAGGTGTAGGAATTGGCGCTTGGGCATCAATTTCTGGCAATAATCCAGATGTGGAAGTTAATGATAATACCAGCGATGCACCAGTAGAAACAGCAGAAGTTAGTGCAGCGACAAATGGTAATGTCAAGGATAGCGTTAACCTCAGACCCCATACACCAAAATGGGCTTATGCATCTTGGCACATTTCCGACAATGAAAAACAAGCAATAGAAGATGCTGATTCCCGGTTAGCGCTGCGACTGTACGATGTGACTGATATCGATTTGAGTTATCAGACTCCTCATTTG # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:0, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACAGACAGCAGCTGAAGATTTACCTGTGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 15756-15502 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQK010000035.1 Calothrix sp. FACHB-1219 contig35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================= ================== 15755 34 100.0 39 .................................. AGGCAGATGTCACGGCAGATGCTGGCTGAGGAATTGGGT 15682 34 100.0 37 .................................. AGATAAAGATGTCCCAAAAACCTCAAACCATGTAGGA 15611 34 100.0 39 .................................. CGGACAATGCTCAATTTATCTATCCTCAATATCTAGCGG 15538 34 94.1 0 ...................TA............. | AGT [15522] ========== ====== ====== ====== ================================== ======================================= ================== 4 34 98.5 39 GTGCTTCAACATTAGATGCCGTTAGGCGTTGAGC # Left flank : AGGTGAAAGTCGGGATTTAGTAAATGATATTACCCTCTTACCAAAAAATTACTATGCAGAACTAATGCGATGGTTAATCCAAGATGAATACGGGTTGTTAACTTTACCTTATTGGGTAGACCATGTAGGTTCGCGGGGAACACGATGGTTAAGTTACGAGATTCAAGAATGTCAAGTATTGCAACCACCTGAATTATCTTGGACTTCAGTTCAAAGTGATTAGAGGCTATTATTTTATTTTGCAAGTACCTTTGCTTGGGAAATCTCAATACCATGAGCAATAGCCTTGTCGTCTTATTTGACAAGCCTTTTAGGGATTTTATATGCATCCTAGATGCTTGCAATTTCCTGTAACACACTCAACACAAGAGTTTACGGCTTGAACAACTTTCCTTGTGCTATGAATAGCTATTAATTTTTGCAACTGGACTAATCCTGAGTGATAGATGCTTGTAAAATTGAACTAGAGCTTAGGCAAGTCAACAAGTTTGGCGATCGCC # Right flank : AACAAGATAGGCTCAAGTATTTGCGTTTAATATACTGATATCTTTCACCAGTACAGATGAATTGCTTTCCTTAAGAGGCAACTGGTGAGTATAAATACGTTCTCACTGAGTACAAAACTAGTCCTCTTGAGTCTCGTCTTTCCAAGAAATTTTAGCGATAATTTTTTCCCATTCCTCAATTTGCTTCTGTATTTGCAATTTGCGATCGCCTAAATCTTGTCTATCATCAACAGGCAAACCCTGACTGGTTAACCGTTCACGGTAGAGAGCAATCAGTTCGTTTAGGGCTTTTTTATTGCTTGCTGATCCTCCAAGCTCAGAGAACTCACATTGACTGGAATCAGCTTTCTACCAATTCTCTCCACAAATTCAGACCGACTTAAATCCATGCTCTCGGCGATCGCATCTAATCCATCAATCCCAGTAGGAGTTAGGGCTAGGTTAACTCGTTTCTTTACCTCATCGTACAGTTCTGGTACGTCTTTTTGACCTTTTTGCCC # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTCAACATTAGATGCCGTTAGGCGTTGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 10871-11266 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQK010000040.1 Calothrix sp. FACHB-1219 contig40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 10871 36 100.0 39 .................................... ACATAACAACGGGCTACACCAGCAAACCAATCTGATAGA 10946 36 100.0 35 .................................... GTTGAACCCCAGGTTTGCGCGATAGCTGTTAGTCC 11017 36 100.0 35 .................................... TTTCTTATCCTTGGTTCCCTGTGTGCAAGGCTTAA 11088 36 100.0 36 .................................... ATTTCTTTTTCCATCCTTGAGGGAGGCTTGGGATAT 11160 36 97.2 35 .........C.......................... GTAAGGTTCCCTACCTCGCCCAAGGTTGCTATCCA 11231 36 91.7 0 ..........................T....AG... | ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 98.1 36 GTGATTCGTGGCTTGATGCCGTTAGGCGTTGCTCAA # Left flank : GTAAGGCGGTTTGGTTGTTTATTTTTGGGAGAAAGTGACCAATTGATTAAAACGATCAAACTTGCAAGGGAAGATTATCTAGAGGGGGTGCGACAGTGGGCGATTAGGGATAATCGAGGTAGGTTAACCTTACCCTATTGGGTTGACCATGTGGGGTCAAGAAATACTCGATTTTTGAGATATCGGATTGAGGAAATGACAAGTTCACTACCTCCTGATTTGGCGTGGACAATGATTCAATCCCCAATTTGACAAGTATCTCTTATGGTAAAGGGAATTTAGGGTAAAAGAATAGTGGAAAGGTTTACGCGGTAAGGGATATGGTAATTGAGGCAAGGAACAAGGTGCTTGCCATTTTTGGGAAAGTTTATCGGCACTTGGTTTGAGGGGCTGAAAGTAAGGGAAACTTTAGTAAGTTTTGTGTTTTTGGTTTCTCGATCTGAAAGGTACTTGTAAGATAGTAAATGAGCCTTGCTCAGTTAAGGGTTTTCACCTTTGCT # Right flank : ATGAGATACAGGTGAATTAAGGTTGTGTTTACCACAAATTCCTCTTCAACAACTACTTTGACTAGAAATTTTTCCCATTGCTCAATTTGATGAAGCAGTTCTAACCTGCGATAGCTACTTAGTGCAAATGAAGCAGAGAGAATTTCTATGCATACAAGAAAGAGAGGTAAATTGAATCACCTCTCCAAGCGATGGGATAGGTTCTTGTGTTTTATGCTACGTCGGCTACAAGTAAGCCATTAACAGCGATGATGATTATTTGTGCTGCCAAAGGAGTGTCACAGCATTGCCTGTCATCCCTATTACAGGGTTGTGCTACCCATTTCCCCTAGAGATTTTGTTAGAAAGTGCCAAGTAGTTGAGAACCATTCCAGACTTGATACAGTTCACCCAAGTTATCTGGTACTGAGTAAATTTCAATTTCTGGTAATACTGGGTCGGCAAGTTGGTCAATTATTCCTCAAACTCTGATTCAGCTAAGGTTGAGTGTTACAAAAATT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATTCGTGGCTTGATGCCGTTAGGCGTTGCTCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 11715-13150 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQK010000062.1 Calothrix sp. FACHB-1219 contig62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 11715 36 100.0 35 .................................... TTTTAGTTGCAACTGTCCTATTGTGTTGTTTTTTT 11786 36 100.0 49 .................................... ACCTCTAGGGTGTAACAAATCTCAAGCAACACCTTTGTGGTGGTGTTGC 11871 36 100.0 35 .................................... TCGTCGTTTCCTTTTGAAAATTCAAATGTGTACAA 11942 36 100.0 39 .................................... TCATATTCAGAAAAAGATTGGGTAGTCATAGTAATTATG 12017 36 100.0 42 .................................... AAGAACGGTCAAAACAATTGTGGAATCCATTGATGTTTTCCT 12095 36 100.0 36 .................................... GCCGAAATGAACGACCGGTGTAGGAACCGCCAACTT 12167 36 100.0 36 .................................... GCGTATTTTCGGAAATGTATTGGTTGATGCAATCAA 12239 36 100.0 37 .................................... TGTAGAGGAGTTACCGCCGCAGTGTCTTCGGCTACAA 12312 36 100.0 41 .................................... TTTCCTTTTGCTTCTTCCATAGACCAGTAACTGCCCAAAGA 12389 36 100.0 35 .................................... CGCATTGGCAGAAAGAGAAAAAGAAATGATGCTGA 12460 36 100.0 37 .................................... TTTTTTGCGTAGGTGAAAGGAATTGCTATTCCCCCAC 12533 36 100.0 37 .................................... GCACCAATTTGATAAACTGAATAAATCGAATGAAACC 12606 36 100.0 37 .................................... TTGATTCAATATCCCTGTTTCTTCTAAAGCTTTTTTC 12679 36 100.0 34 .................................... GTTCATATACAACTCCCCAAAGCAGTATATAACC 12749 36 100.0 40 .................................... TTTAACTGTGGCATTTGATAGCCTGTTAATGCAGTATACC 12825 36 100.0 39 .................................... GAAATTTGGTCGAAGTTTCTTGTCAACCTAGCTTTTAAA 12900 36 100.0 36 .................................... TCCAAACCCTTTGTCAGGTTTTGGTAAAAGATCTAC 12972 36 100.0 35 .................................... AAAAAAAAGTTCTCCCCGTGAAGGTAGATCTTTTA 13043 36 100.0 36 .................................... ATTTTTAGAAATCAATCAAACCAAAAGAGAATAAGA 13115 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================= ================== 20 36 100.0 38 CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Left flank : CGGTTTTAGCTGCCTGTTGAGTCTTGAGTCGGGAAGTTGGCATATAAGGTATAATTTTATAGTGATTTTCTTGTATTTGTGATATCCGAATATTAAATTTATATTTATTTGGATATGCTATGCGATGCCTTTGGCAACCACTTCGTGGTATCGCGTTAAATATTCACGGTATGTGTTTCATCTTAGTTGGGTACAAATGATAATTCTACGTTGCTCGTGCGAATAACCAATCAGAATATTATGTCTAACCAAGTCTGGTATCAAAGCCTTACTGTATCTAGGCTTGAGGCTAGTTTAGGAGGTTTTTGTAACATGACTATCTACACACCTCGGCAAATCGCCAAAACCCTTATTCTTTCGTTGAGGTGTGTCGATTGCTTACTGTGTAAGGGTTTGAGCTATGTGTTTGATTAATTTTGCGGCTGGTTTTACAATGTTTTTTAGAGGTGTGTCGATTTGCGGTCTGAAATCCTTACTGGGTAAGGGCTGCTAGACGAACT # Right flank : CAAAAAAGCCCTCATTAATATGAGGGCTTGTTATTTTTTTAATAGCTATTAATTGACAATGATAGCTGGCTTAAAAAGCGATTGCACTTTTCAAAATACGAATTACTATAGCCATCCTATTACAGTTGTGACAAATATCGGTTTTGGCTATTGACTATTGACTGCGCCGCACTGAAGCTCACGCGAAGTGTTGACTGTCAACGGTTAACAGTCAACAACCCTGTATGTAATATTTCATAAATCCGCTCTTCGGATTGCTAGATTTTTCGTCATTCGCATGAGAGAAGGTTGCAATTGGGGTCATATCTGCAACACTTGGTACTATAAGCGTTTGGTTGAAAATTAATAAGTAAGAGAAGAACCAGCTACTTTGACTGGCTGACTTTTTATGGTTACGAATTGTTACATAGATAAAGAGAATCAGTACTTTTGGGTAACAGCGAAGTTGCTCATTATACGATTCTTTTGGTGTTAGAGATTGTAGTTCAAGTTATTTACGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 21578-22268 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQK010000062.1 Calothrix sp. FACHB-1219 contig62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 21578 37 100.0 37 ..................................... AAGAAAGGAAGATTTAGTTGACAAGTCTGATGACCCT 21652 37 100.0 37 ..................................... TTTTACCTTCCGCCTAACTAAGTACTTCTGCTCAATA 21726 37 100.0 35 ..................................... TTTAATCCGTTTTTCTCACTTCCCGCGTTGATAAT 21798 37 100.0 35 ..................................... CAATCATTGCTTGCGCTTTGATTTTTTCTTGTTCC 21870 37 100.0 34 ..................................... ACGCTATGAAATGCTAGAACTATAAACCCTGGTA 21941 37 100.0 36 ..................................... TAGCTATGGTGATAGACCTATCAGCGCTAGTATTCG 22014 37 100.0 35 ..................................... TTCTAGCACCTTAAAAGCCCAGTCATAAGCCTTAG 22086 37 100.0 38 ..................................... GTTTTAATTCAAAAATTTCCTGGGTAGTTGATTGGTGT 22161 37 100.0 34 ..................................... GTAAACACGCTCTAGAAATTCTCTAGATTCCCTG 22232 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 100.0 36 GTCTCCACTAACCATGTGGAGGCGCATAATTGGAAAC # Left flank : TGACGATCGCCGCAATCAACTATTACATAATCTCCGGGGAATGGAAGACGAAAGCGTAAAAGAATATTTACTAGGCTATGATAGTAATATTAGCGCCAGTAGTGTTGATGAAGCTTATGAAAAGCATGTTAAAGAGCCTTTTGTCTCAGCCTTAAAACTATTCAAGTTATTACCCGAACACCCTACCAATTTAAAACAAAAGCTTAAAGATATAGCAAATTCTATTTCTTGAATTAATTTATTGTCTAAACTGCGCGAACCAGGAGGTGTATTTATCGAACGCTTGTTATATAACCGCTAAAGGCTTATTAGCTATAGCTTAGGAGTTTTTTAATAAAAATGAGGTTCGCGCAAACTCTGTAATGTATATCAGGAAAGTGTTTGAGGTCATTTTGATACAGGGAGGACTTGACAAGCGATCGCGCAAACTGTACTTTTTTACTCTATCCGCGCAAACTCGTCTTGAAAGTCTTGTATATCAAGCCTTCTAGACTCCAACA # Right flank : CATGGTTGGCGATCGCGATAAGCCATTGTGGTATAGTCTCCAGTAACAACATGGAGACTTTTGCATAAAAAATCGTCAATCGCATCACAAATAGACGATTTTCTAATCTTCACCAACAATAATAAAAATACAGCAAATTGCAACTTGGTGAGATACAGATAATCGTTGATTGTAGGGGCATTGGCACTGCCATGCCCCGAAGCGCGTACCTCATTTACCAGAAATATGCTGTATCATACCTAAACGTAATGGTAATTTACGAGAATTAAAAATACCAACAGTACGCGATCGCATTGTTCAACAAGCTCTATTAAATGTATTTTATCCCGTAATGGAGGCGAGATTTTCTAGTGCGAGTTTTGCCTATCGTCCCAATTTATCTTATCTAAATGCAGTCGAAAAAATCGCTGATTTTCGCGATGAAGGTTATGTTTGGGTATTTGATGCTGATATCGCCAAATTTTTTGATAATATCTATCATGGACATTTAGCCAGTGAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTAACCATGTGGAGGCGCATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.00,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 24988-25487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQK010000058.1 Calothrix sp. FACHB-1219 contig58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================================================================================================================ ================== 24988 34 85.3 140 T....................A...TG......C CCATCCACATAACACCAAAAACCCTAATATGCGTAGGTTGGGTTGAGGAACGAAACCCAACATTTTCCCGGATTTGTTGGGTTTCACTTCGTTCAACCCAACCTACAATTTATCTTTCACTGATTTAGGTTAATGTTTCA 25162 34 97.1 38 T................................. CTTGGTTATAAAGCAGTCCAATCGGCTGCAAAAACTGG 25234 34 100.0 38 .................................. CATTGGTTCGTGTTCTTTTTGCTAGCAGCCTTAGTATG 25306 34 100.0 41 .................................. CTAATCGTATATGAACCATTTGGCGAATTTTTATTTGCTAA 25381 34 100.0 39 .................................. CTATTAATCCCAATTTCTGGAGTTATAGGCTTCACGCTT 25454 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ============================================================================================================================================ ================== 6 34 97.1 59 GTTTCCATCCCCGTGAGGGGTGATGAATTGAAAA # Left flank : GCAATATGTAGAGGTAAAAATAGGCGATCGCTCTATAATATTTTGCAACGGACATTATTATTGGCAACCTGGTTCTACACCAGAACGGATGAAGCAGATACAGCTATTAGTCAATTGGCTGGGTAAGCTACCACCAGAAATCCCCATTATCGCCGTCGGAGATTTTAACGCCACTCCCGACACCCCCGAAATTGCATTTATCTGCGAAAAATTTACCTCAGCTTACGCCAGTTATCATGGCGAAGAACCAGAATATACTTGTCCTACGCCTTTGGTGAAACCTAACCGCAGCTTGTGGCGTAAAGTTGCACTGAGGTTACTGAATTTGTATGTTAATCGCACCTGGAAACCTTGGCGCGGTACTCTGGATTACATATTTATTAGCAATAATTTGACTGTGCGCGACTGTCAATTGATTCTCACTGAACCTGCGCCGGAGAATTCTAATATTTATCCCTCAGATCATTTTGGCATTGTGGCTGATTTGGGTTAATGTTTCG # Right flank : ACCCTACCCTTCTAGAACCGTTGCTATAACTGGGGTTGAAGGTGCCATTTTAGCGGGGGGTCTAAATTTACTGTCAATAAGCATAATTTATTGACATTGGAACATCAATACAGACACCTCAAAGCTTTATGTAGTAAGCGATTCGCGGGGGTCAACGAAAGAATCAGGGTTTGAGCGATTGCTCTACACCCGCGAAAAATTTACGTGTGTTTAGTCAAAACAAATACTTTTGTTTTCACTGGGAAACGTTAGATTCAGTTTTCAAGGTTCTGTAAATTTATCAAAGAGTATAACAAATTACTTGGAAATTTTTACTCTATATATTGCGAATGTAACATATCTAAAACTGGGCTTGGATTGTTTACAAAATTTTTTCAGCTTCAGCTTTCTGGGGTAACAGATCCCCGACTTCTTCGAGAAGTCGGGGATTTGAACACCATCAACTTCTCACAACTAATGAGACGAACTACTAGATAGTCTTGGTAAAATGCGAACGATAA # Questionable array : NO Score: 6.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:-2.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTGATGAATTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 1 16365-15529 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQK010000064.1 Calothrix sp. FACHB-1219 contig64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 16364 36 100.0 37 .................................... AAATAATTTGTGGACAACGTTAATTAGCCGTCTTCAA 16291 36 100.0 37 .................................... TAAGGGTTCCATCTCCATTATAGAGAGTAGAAGCAGA 16218 36 100.0 38 .................................... TAAATCTCCTGGATTCAGAGTGTATAACTCTGGATAAA 16144 36 100.0 34 .................................... GGATGGCATCTAATCCTGCTTTATCTCCCCAACC 16074 36 100.0 41 .................................... ATTGCGTGTCTACCGGATGTACGATCCCAGACGGAGTCTCC 15997 36 100.0 35 .................................... AGATAGAAATAGAGAGAGTTTACAGCAACAATCAC 15926 36 100.0 35 .................................... TTTTTGGTTGCAAAATTGCCTTTAACAACTGTTGA 15855 36 100.0 35 .................................... ACAAAGCTATGCTCGCAATTGAGTGAATCTTTTAC 15784 36 100.0 36 .................................... AGGAGATGAAGTTTGTGGAATGGTAAATTCCAATTC 15712 36 97.2 39 ..........G......................... ATTACTGCTCCTGCGATAATAACTATCAGGATAAGCAGC 15637 36 97.2 37 ..........G......................... CAATGTCACCAATTTCAGCCTTTGGGTTTGCTTGAAC 15564 36 94.4 0 ...............................A...G | ========== ====== ====== ====== ==================================== ========================================= ================== 12 36 99.1 37 CTTTACGATCACATCGCCCCGCAAGGGGATGGAAAC # Left flank : CGTACCCGTAGTGTATCGCCATCCCCGACACTAACTACAGTCATAGCAGGTAAGTTGGTTTGAGCAGTAGACGGAAGCCCAGAGAGCAGCATTGCAGCTATTGCAAGGACAGCAGTCTTGTTCATGGTGAATATCAATGTATTACTGGTAATAAATTCTACTTTCCATGACCTTAATCGTCCGTGATAAGCATCACTGTGGGCGGGTAGCGATATAGTGCTGCTTCCCCACCGCCATTAACTTATTTATCCAAAGCTTGACAGATTGAAGTAGCACATATTACTTTTTTACCTAGTGCGATGAACCTCATCGACACCACTCACCAGAACCTTGAAAACCGCATAACTTCGTTGACTGGTGTCGATTGCTTACACAGTATAGTTTCCAAGCTGTGAAAAGCCAAATTTATTGATAATTTTCAGTACTTATTGACACTATAAAAAGTGGTGTCGATTAGGGGGTCTGAAAGCCTTGCTATGTATAGTTTCCAGAAGTGAACT # Right flank : ACAAACCCTTCTCCAATGAATTAAAGCTGTGGTAGGTAATTTCTGATCGCATCGCCCCAAAAATAGCAGCATGAACCAGTTCAAAATCCAGTCCATCTCCATCATCAATGGCTGTACTTTGTTGGTGTATTACACTAGTGGAAAATCCTGGCAGTTTCGCGTGATTAGTCCAGAGGGTGAGGTGTATGGTTCGCGCAAAATTTTCTACACGAGCGAAGCAGCTAGAGTTGCTGGAGTCAGTTGGGTTTGTGGCGAGAAATAAATTGATAGATGCGGTGTAAGTTAGCCAATCAAAACCTCAGCCACTAACATCCGATTCCATTATCGGAATGTTAGTTGCGTTTGGATAGTTCAGCAGTGTGAAAGCCCCGGTGATGTACCGAGGGCTTGTTGTTCATAACTTTCGGCTTTCTCTGAAATACGACCTTTGAGATTAAGTTGCAGTGATTAAGCTCTTGGCTTTAGTTAAATTAGTCTGAATCCACTATATTGCTGCGCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACGATCACATCGCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.60,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 10459-10716 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQK010000079.1 Calothrix sp. FACHB-1219 contig79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 10459 38 100.0 36 ...................................... ATGGCGGTGTTCACAAAATTACTAAAGCCTTTAACA 10533 38 100.0 35 ...................................... CAATTATCAATTCAATTTTCTGCTCTTTAGTCCAT 10606 38 100.0 35 ...................................... ATCGCTCAAGGTAAAGATGCCTGCATCAAATATCT 10679 38 94.7 0 A....................................G | ========== ====== ====== ====== ====================================== ==================================== ================== 4 38 98.7 36 GGTTTCAACAACCTATTACCCCGCAAGGGGATTGAAAC # Left flank : AAAAGCTGATGGAAAACGGAATTGATTTACCCTTCCCCACCCAGCAAATTCTCTTTCACGATCAAACAGAAGAAACAGATGGCGATCGCTCTCGTCAACGCGAAGGCTGGCCTGCGGTTAAAGGTAAAGTCCCAAAACCTCGCCGCATCAGCGATTCACTCAGGTTACTTGCTCAATCCCACACCTCATCAGATGGTAATCACAAAGTAGATTCTCACAGCAATGAATCTTAAAGAACTACCAAGGAATTTCTCACCGAGAGTTGAGTATAATTTGATTATTCATGTATTAGCTTGACATTTGGCATATCCAAGCGGGGGTAAAAACCTGGGGGGTTCCGCCAAAAATGCCAGAACCTTGACAAATCAATAATTACAGGGTTTCAATTCTTAGGGAAGTTGCCAATTTATTGCAATAAGGTAGGCTGAAAACGACCTTTTTTTTCGATCTGCCAAAATCCTTCCTAGAAAGTATACGGTGTATTAGTTTCAAGACTCAGG # Right flank : GAAATAGGATTGCTGAATTAGGGGATGAATTTTGATTTATTGAAATTTTCTACTCCTCATACCAAACTGCAATCTAAAACCTAACATTGAAATCCACACAAGGGCGGGGAAACCCCACCCCTACCAAAATCTTAATTACATATCAAAACGCGGATTGATATTATTCTCTCTGCGCCTCTGCGCCTCTGCGTGAGATAAATCATCCCGCATTTATGCAACCCCAAGAAATATATGATTTTCAAAAAAAAGCGATCGCCTAACTACTCAATTACGAATTATTCCTCAGCTAATTGACTCACAATTCTGGCAAATTCATCTGTCATCCAATCATCACCAGTTTCACGATAAACTTCCAGCAACGACTTATAAAACCATAAAGTTTTTTCTCTACCAATTTTTAAATGACTCCAAACAATATCACCATATATCCGCGAATCTATTAATAACGATCTAGCATTATGCAACTTATCGGCTAAAGATACTCTGCGCACAGAAGCAGA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCAACAACCTATTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //