Array 1 69258-67639 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWMR01000008.1 Neisseria meningitidis strain Nm130508 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 69257 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 69191 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 69125 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 69059 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 68993 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 68927 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 68861 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 68795 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 68729 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 68663 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 68597 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 68531 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 68465 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 68399 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 68333 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 68267 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 68201 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 68136 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 68070 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 68004 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 67938 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 67872 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 67806 36 100.0 30 .................................... TCAACGTTATCGGGCCCGAGTTGATAACAG 67740 36 100.0 30 .................................... ACACCCTGAACACCGCACTTTATGGCGTTT 67674 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //