Array 1 7712-8205 **** Predicted by CRISPRDetect 2.4 *** >NZ_WDON01000014.1 Bifidobacterium bifidum strain BIOML-A11 scaffold14_size10646, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 7712 37 97.3 29 G.................................... CGGTGTCGTCCTCGTCGAGTTGTTCTTTT 7778 37 100.0 29 ..................................... CCTATGTACGTAGGCCTGATCGTTCCATC 7844 37 97.3 29 G.................................... TGAACTGAGCTGTGTACTGGCCGCGCGTT 7910 37 100.0 24 ..................................... TCCCCCNNNNNNNNNTGTTCTTTT 7971 37 100.0 29 ..................................... TGGCCGTACCGTCATTGTCGATGGATGTA 8037 37 100.0 29 ..................................... CGAGCATCGTCGCCGTCTTCTCGAGTTGC 8103 37 100.0 29 ..................................... GTTTGACATGTGCGGTGTTGTGTGCTACG 8169 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 8 37 99.3 28 TGTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Left flank : GATTGCGCGGATGAAGTGGATTATAATGCTTTGTTCCAGAAGCTTGCTGTCAAGAAAATAATCGAAGGATTTACGCCGGAGCAAATCAGTAGATTATTGTCTTTGCAGGCTGAGTTAAAAACAATTATTCAAGATGAGATATGGGGTCAAAATCTACCTCTGACTATTCCCTGCGATTTGGATTTGAAAGCAGCAATTGCAATGGCCAAACCTCGGATTGACACGAGTTCTTTGGGATCCTTGTATGATAAAATTTCGACGGCAGTAGATACTGCCGGTGCTCTTGCCGAGAGCAGGATGCTGGTGACGCTTCATACAACTCAATACTGTGATAACGACCAATTACTTTATCTGCACCGTACTTTATTGCGGTACCAGTTGCAGCTTCTTGACCTGGAATGCTGCAGCAAGAAAGTCATGCTGACAGAGGGGATGAGCCACTATGTCGATGAGGATTACGTTCAGTTCTCATGAACTGTTCAGGAATCCTTAAGGCTATC # Right flank : CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTTGACCACCCCGCCAGATCTCACGGGCGGCGTCACATTGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACTCCGGCATTCGCGTTGTAATGCTCTTGCGTAGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACGAGCTAATCGGAGAGGATTCTCAGGAGATGGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACCCGCGTTGCGATGCATAGGACGTTCCGCGCGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACCAGCTTTGGTGGTGCGTGGACTTATCTCGCGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACGCGCGTCCAGTAATTCCACGTCGCTCACATGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACGTTTCTACTGGTGCTGATAGACTATATAACGTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Alternate repeat : GGTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 8305-10322 **** Predicted by CRISPRDetect 2.4 *** >NZ_WDON01000014.1 Bifidobacterium bifidum strain BIOML-A11 scaffold14_size10646, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8305 36 100.0 31 .................................... TCCGGCATTCGCGTTGTAATGCTCTTGCGTA 8372 36 100.0 30 .................................... GAGCTAATCGGAGAGGATTCTCAGGAGATG 8438 36 100.0 30 .................................... CCGCGTTGCGATGCATAGGACGTTCCGCGC 8504 36 100.0 30 .................................... CAGCTTTGGTGGTGCGTGGACTTATCTCGC 8570 36 100.0 30 .................................... GCGCGTCCAGTAATTCCACGTCGCTCACAT 8636 36 100.0 30 .................................... GTTTCTACTGGTGCTGATAGACTATATAAC 8702 36 100.0 30 .................................... TTTTGGGAGCTTGATTCTGCCGTGATTTGA 8768 36 100.0 30 .................................... GACGGCAGCCGCCACCGACATGACCGCAAA 8834 36 100.0 30 .................................... GCATAAGATCGGCATGGCGGGCGTGGACTA 8900 36 100.0 31 .................................... TCAGGGATATCCTCATCTGATCGTAGCCTGT 8967 36 100.0 30 .................................... GCAAATATCGTCCAGTTGTTCGGTACACGT 9033 36 100.0 30 .................................... AGAACGTCGTTGCGGCGAAACCCTTCATCT 9099 36 100.0 30 .................................... CGTAGGCATGGGATTGTTCGCGGTAGCGTT 9165 36 100.0 30 .................................... CATCACACGGCACCCTCGAAGGCGAGAGCA 9231 36 100.0 30 .................................... TTTGACGACGCCGAGCGTGGTCGCGGTCGC 9297 36 100.0 30 .................................... CGCGGTGAAATTCCCGTGGCAAGACTAGTC 9363 36 100.0 30 .................................... GAATTCTCAGCACTTTCCGAAGGCTTATCA 9429 36 100.0 30 .................................... TGCCGTTACAATCGAACCCAGCTAAAGACG 9495 36 100.0 30 .................................... GCGATGCGGACACATGGCATAAAATGCGCA 9561 36 100.0 30 .................................... TTTCCACTGTTGTTGTGTTGTGTGTTGTGT 9627 36 100.0 30 .................................... TAAGCCAAATCGGACTACCGCCGTCAACGT 9693 36 100.0 30 .................................... TTGTGGTGATGTTATTGCAGCCGAAATACA 9759 36 100.0 30 .................................... AAACAATCTCAACGGCATGGCCAGCATTGT 9825 36 100.0 30 .................................... TTTGACGCACCGCTAACAATTTCGGACTGC 9891 36 100.0 30 .................................... TGACGTGACGTTTGGTAGCTGCTATGTGAC 9957 36 100.0 31 .................................... TACAGCAGCAGAAAAAGAAGAGCACGTATGT 10024 36 100.0 29 .................................... TCGATTCACCACAATAAACCAGATATGTA 10089 36 100.0 30 .................................... AAGTCGGTGATCGCCGCCGCTGGGGTGAGT 10155 36 100.0 30 .................................... AAACTCACGCCGCTTAACTTGGCCTGCTGG 10221 36 100.0 30 .................................... TCATGTCTAACTATATTCGTGGTTAGATAT 10287 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.9 30 GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Left flank : CTTTGACCACCCTATGTACGTAGGCCTGATCGTTCCATCGGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACTGAACTGAGCTGTGTACTGGCCGCGCGTTTGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACTCCCCCNNNNNNNNNTGTTCTTTTTGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACTGGCCGTACCGTCATTGTCGATGGATGTATGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACCGAGCATCGTCGCCGTCTTCTCGAGTTGCTGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACGTTTGACATGTGCGGTGTTGTGTGCTACGTGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTTGACCACCCCGCCAGATCTCACGGGCGGCGTCACATT # Right flank : GTGATGCGCAATAGTGTTAGGGGCACCTCTGTTGCTGTCTTCTGGATAGCTTCCGGGGTGTGCTTTTGATTCTGGTGACATATGGGAAACGATTGATGCACAATATTCGGACTGTTATAGTGATGTGTTTTGTCAAGTTGTTATAGGCCAGTGTGGCGTGAGTTTTCCTTCCGAAAAAGCGGTAGGTTTTAGTCCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //