Array 1 968342-969763 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071000.1 Limosilactobacillus fermentum strain GR1008 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 968342 36 100.0 30 .................................... AGATAATTATGGGTTATAAAGCAACTCCTC 968408 36 100.0 30 .................................... ATCTTTACGGTTTCAGCATCACCATCTTCT 968474 36 100.0 30 .................................... AACGGACTGATGCAATGTTAGACGCCCTTT 968540 36 100.0 30 .................................... AAAATATACTCAATTTGATACCCAGGGTGT 968606 36 100.0 30 .................................... TTAATGATGCGCTGAAAGGCATTGCCAGTC 968672 36 100.0 30 .................................... ACAACTATTTCAATCTATCGAAATTATTAC 968738 36 100.0 30 .................................... GAGTAACAGTGGCTTTACGCGTGAGAGTAC 968804 36 100.0 30 .................................... ACCAGGTTTTGCGTAACTTGATTGACGCCA 968870 36 100.0 30 .................................... AAGTGGACGGTCAGCTCTACACCATCAGAG 968936 36 100.0 30 .................................... ATCGACAACGTGATTGGGGACCCAATTGTC 969002 36 100.0 30 .................................... CATTACCTTTACCTTTCTTGTTGTATACCG 969068 36 100.0 30 .................................... CCGATCGGTAGAAGTCTTTGGGAACTACGC 969134 36 100.0 30 .................................... AGAATACGTCGAGCAACACAAGAAAGACAA 969200 36 100.0 30 .................................... AACTGGACGAGTGCGGATTTTTTTGTTGCA 969266 36 100.0 30 .................................... GGGAACGAAGCGACTTCCGCGCGATCGAAG 969332 36 100.0 30 .................................... AATTGACATCCGGCTTTTTGAGGCCAGACA 969398 36 97.2 30 ...............................G.... AGGCAAAGCCGTCAGAGTGACGACAAATCT 969464 36 97.2 30 ...............................G.... AGGCAAAGCCGTCAGAGTGACGACAAATCT 969530 36 100.0 30 .................................... CTATCAAAGCTGAACAGTTCGATGGTTCTC 969596 36 100.0 30 .................................... TCGTCAGTGCCACGCATGACCACTTCATAG 969662 36 100.0 30 .................................... TTGAGCTTAGCAATTGACGCGGTAAGCTGT 969728 36 86.1 0 ............................TA..A.TA | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.1 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAACTTGATAGTTACCAAACGTCACTCGATAAGATGATTGTCAAAAATCTTAGTATCGAGAAGCGAGATCGGATGAATAACCTTGCTCGAGAGGTGTTCTCAGAGATGCAAGATTCTTTGTTCGAATTCGACTTACCGTTGGAGGCGCGGTATGACGAGAGCCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTGATGAGAAAACAACG # Right flank : ATAGACTAAGGGCGTTGCTGTTTTTAGCAATGCCTTTTTTAGAAGTGATGAGGGAAAGGTAAATGTTTTCACGTTGGTAATCTGACGGGAACTTTAGTGGGCGATGTGCTAGGATAGGGCCAAAATGATTGGAAGTGTTTGCCATGCAAATTGATCCCGAACGGATTCGCCCCGAACTGCGCCGAATCGGCAAGGTGGGGTACGCAATCAACCTGATGGCCAGCCCGCACGCCTGCAACGAATGGGACGAATAACGGCGAAGGCGAAAATGCCCATTCACTCGCGGCGGGTGATCAAACAATACGTTTGGATTGAACGCCCTGACCATAGCAAGCTTCGGCTGGCTATTTTCCGGGCCAAGCAAGTTGCTACCAAGCGCCCGGCCACCGGGATCCTCTGGTTGCACGGGGGAGGCTACGCCTTGGAAACCGCCGAAAATGCCTTGGTTTATGCTGAACAGTTGGTGGCTGACGGACGGTCCGTGATGGTGGCGCCGGATT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1475177-1473867 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071000.1 Limosilactobacillus fermentum strain GR1008 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1475176 29 96.6 32 ............................C TAAATGGCCGTATCTGTCGATACCAATTCTGA 1475115 29 96.6 32 ............................C CCAAAGGTAATGGTTGAATTGTTGCCTACCTG 1475054 29 96.6 32 ............................C TTTAACTACGATTTTGCAAAAGAAAAAGCCCT 1474993 29 100.0 32 ............................. TTGGTTATCATCGATTGCCACTCCAGAAGTTG 1474932 29 100.0 32 ............................. AGATGCCCGGTGACACTATTAACCGTTAGAGT 1474871 29 96.6 33 ............................C CTCGTCATTGCCGAAGGTCGTACCTGGCTTGAG 1474809 29 96.6 32 ............................C AGCACTCGTCAACTCACAAGATCAGACGATTG 1474748 29 100.0 32 ............................. ATACTCAAACTTCTTCGTTCCGCCGAAATACG 1474687 29 100.0 32 ............................. TAGACAGACGGTTTTATCCGTTAAGTCAGTTT 1474626 29 100.0 32 ............................. TCCGATCATCGGAGCTTGGCTTTCAAAACAAC 1474565 29 96.6 32 ............................C GACTTTACCGTCGATGGAGCAGGCGGTTTTAA 1474504 29 100.0 32 ............................. GAGCGAGTAATTTTAAGAGCTTTCGCAACATC 1474443 29 100.0 32 ............................. GAAGAAGTCAACACAGATTATCGACTTGTCAA 1474382 29 100.0 32 ............................. AGCCAGATAGACAATCCGGCCAGCGTCACCCT 1474321 29 100.0 32 ............................. AGTAAGAGCATGTATCCAGTTGCCTTCCAGAT 1474260 29 96.6 32 ............................C AAGTGCCATAATCGCCGTTTTACCAATCTTTT 1474199 29 100.0 32 ............................. TACACGAATCAAGGTAAGAATGCACCACAAGG 1474138 29 100.0 32 ............................. TAGGGATGCGTACATTGGCCAGCTTTGGAAAA 1474077 29 100.0 32 ............................. ACATACCCAGTTTATCCAGTTGGCCGGTTTCC 1474016 29 89.7 31 .............G.......A......C GACATGTGGAAGAGGCTGATCGCCATCCCCG 1473956 29 82.8 31 .......T....A.....A..A...G... GCTTGCCGGGATCCCTGTCTCCGTGTGCCTC 1473896 29 79.3 0 ...T.......TC.A........A....C | T [1473891] ========== ====== ====== ====== ============================= ================================= ================== 22 29 96.7 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAATGGTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : TGCGCACTTCAGTCGCCAGAGGGACTTTAAAGTGCTCATGGGTGATCGCTAAGAAGTTAGCTCGAGCGTATACAACGAAAAAACAGGCAATTAATTTTGTCAGCGACATTTTACGTCCCTCGGGTGCGATAGACTAACTTTAGAGGGTACGTCGGAGCGGTGCCTTTGCCAAAGTCAGGGTCAAAATAGTTAAACGCAGTTCTTTTTCCGTATCTAACCATGAAGAAACCTTTTTAAAGGGAGGATGGTTAGATGCGCAAGAAAGTGCAACAGATTGGCAATCAACAGCGGCATCGGTTTCGGGCGAAATTTTGCCGACTAGGGTACAAGGTGAGCTACGGCCACTTCAAGCCAACGCTTTTACTGACCGAGGTGGAACTTATTGATGATATGGAAAAACCGCAAGTGGTGACTTCACACTTATGGTTTAACTACACGACGGGGTTTCAGCGCCTGGGTCAGTTACAACCGGGTGACGTCATTTTGTTTAACGCCAGGGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //