Array 1 828099-826436 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDK01000001.1 Riemerella anatipestifer strain RCAD0183 ZB100000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 828098 47 100.0 30 ............................................... ATGCCATCAAGGCACTGCAGCAGCGCTGGC 828021 47 100.0 30 ............................................... ATCATGGAAATCAGTCTGTTGCAGGCATTC 827944 47 100.0 30 ............................................... ACGCCGACGCCGCTTGCCAGCACATTGCCG 827867 47 100.0 30 ............................................... CAGCTGGCCGATGCGCCGCAGACCGTTAGC 827790 47 100.0 30 ............................................... TTCCCTTAGTTTTTTCAATTGCTCGTAAGC 827713 47 100.0 30 ............................................... AACATGATGCTTATGGACGCTCCAAAGGTT 827636 47 100.0 30 ............................................... CTAATTTATATATAGAAAAAAATCGTAAAG 827559 47 100.0 29 ............................................... CTCTCCCGCTTGCGGGAGAGGGCAGGGGT 827483 47 100.0 30 ............................................... GTTATGATTGCTGTTTTGTTTTTTAAATCT 827406 47 100.0 30 ............................................... ATTCGGCAGATTATTACAAGATTGATTTTA 827329 47 100.0 30 ............................................... ATCCAAAACGATTTACAGCAGATTGCGAGT 827252 47 100.0 30 ............................................... GCGATTCCGGTTCAGGCCAGCACCTGGAGA 827175 47 100.0 30 ............................................... TAGTATTGGGATGTGTTATTTAAAAAGTGT 827098 47 100.0 30 ............................................... TTTCGGTTGCTATCCGAAACGATTCGGATC 827021 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 826944 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 826867 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 826790 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 826713 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 826636 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 826559 47 97.9 30 ........................G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 826482 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 22 47 99.0 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : ATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.87,4.91 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 14261-12196 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDK01000010.1 Riemerella anatipestifer strain RCAD0183 ZB100009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 14260 36 97.2 30 ................T................... TAAAAAATAGAATAAGAAATATTCCTATCA 14194 36 97.2 30 ................G................... CATTTCAGAGTTGCAGATTAAATTGGTTGA 14128 36 94.4 30 .......T........G................... TTTAGCTTCATTCTCTGTACCTTTTAGAAT 14062 36 97.2 30 ................T................... AAAGGCTTATCGCCTCTATATTTTCAAAAT 13996 36 97.2 30 ................T................... CTGTTGTTGTAAATATAATAGGTCCTATTG 13930 36 97.2 30 ................T................... CCTTTTCCTCATCACCTTCGTAGATGCAGA 13864 36 97.2 30 ................T................... TTCATTTATACTTCTAGGTAACTTAGTTAA 13798 36 100.0 30 .................................... AAAGGAACGCTACTCGTTGTAGGAAGCACA 13732 36 100.0 30 .................................... GGAGCCACCAAGATATCCCAAGGGTTCGTC 13666 36 100.0 30 .................................... TAAGATTTCTGGATTTTCGTATATGTTGCT 13600 36 100.0 30 .................................... TGCTTTGTTCTTCTCCTTCTTTTGTTGCCG 13534 36 100.0 30 .................................... AGCCACAGCGTTTGATGGTTCTACTGCTAT 13468 36 100.0 80 .................................... AGATCATGAAAACATTCAATTCTACCTTCCGTTGGGACTGCTCTCATTTTAGCTCACAGCTTTGTTGTAGTTTCAGCGGA 13352 35 86.1 80 ...C...A....AG..-................... GAGTTAAACAATGGCGTATTATTCGTCCAAGTTGGGACTGCTCTCATTTTAGCTCACAGCTTCGTTGTATTTTCAGCGGA A,T [13341,13348] 13235 35 83.3 81 ...C...A...G-.A.............C....... TTTTTTCACGAGTATCTGCTAAGTCTGATTGTTGGGACTGCTCTCAGTTTAGCTCACAACTTTGTTGTCGTTTTCAGCAGA A,T [13218,13231] 13117 35 86.1 81 ...C...A...A-.A..................... TTTATTTTGGTATTTTAAGTTGTTGTGAGTGTTGGGACTGCTCTCAGTTTAGCTCACAAGCTTTGTTGTTGTTTCAGCGGA A,T [13100,13113] 12999 35 83.3 82 ...C...A....AG..-.............A..... ATATTAAGGCTACAGCACAAAACACAGAAAGTTGGGACTGCTCTCAGTTTAGCTCACAGCTTTGTTGTAAGTTTTCAGCGGA G,T [12988,12995] 12880 35 83.3 79 ...C...A...G-.A.............C....... CCGTTTAGTTTACCGTCATCTGCTAGGTCTGTTGGGACTACTCTCATTTTACTCACAGCTTCGTTATATTTTCAGCGGA A,T [12863,12876] 12764 35 86.1 79 ...C...A.A..-.A..................... GCCGATTAAGTCCAGCTAATCGCCCTCGAAGTTGGGACTGCTCTCATTTTACTCACGACTTTGTTGTTGTTTCAGCGGA A,G,T [12746,12748,12760] 12647 35 83.3 79 ...C...A...G-.A.............C....... ATTTCCTATACTTTCTTGCATTGCTGTTGTGTTGGGACTGCTCTCATTTTAGCTCACGCTTCGTTATATTTTCAGCGGA A,T [12630,12643] 12531 35 86.1 79 ...C...A.A..-.A..................... GCCGATTAAGTCCAGCTAATCGCCCTCGAAGTTGGGACTGCTCTCATTTTACTCACGACTTTGTTGTTGTTTCAGCGGA A,G,T [12513,12515,12527] 12414 35 83.3 80 ...C...A...G-.A.............C....... ATTTCCTATACTTTCTTGCATTGCTGTTGTGTTGGGACTGCTCTCATTTTAGCTCACGCTTCGTTATATTTTCAGCGGAG A,T [12397,12410] 12297 35 83.3 30 T...T..A....AG..-................... AATTTCTCATATCGTTATTATTTTACTAGT A [12287] 12231 36 88.9 0 ...........CA...T.C................. | ========== ====== ====== ====== ==================================== ================================================================================== ================== 24 36 92.1 52 GTTGGGACTGCTCTCACTTTGAAGGGTATTCACAAC # Left flank : TACCGTCTGCTGGCGTATATGACCGACCAAGACAACCCCAAAAACCTCTTAAAATGGGAAGTTCCCAAAGGGCAAAAGGATAAAATTCATTATATTAACCGAGCCAATGCCCAAGCCTTTCTAAGGGAGCTCCCAGAACTATTTTATGGGGAGGGCTGTGGGCTCTTCTTATCTGAGGAAGTCACCAAAAAGTTTTTTGAGTACCGTAGTATCGTTCATAAGCTCCTACTTGCAGAGCAAAACAGCACCGAGGCGGAGTTCCGACTAAAAAACGAAGAGGCGGCTACCAGAATGAAGGTGCTGCATCATAAGTTGAGCCAAAGCATTAGGCAATGCCTAAAAATAGAACAACGCGATTTAAAAGCGTTGTAAAGAAAAGCGTTCTTTGAAACATCGAGATAAAACAAGCACCCAAAAAAGACAATACCCTATCATAACAATAATGCACAGCATTTGAAGGGTATTCACAACACCAATAAATACAGCTTATTTGCTCCTAA # Right flank : ACCTAAGGGCATAAAAAAATCCCTGCTCTGTACGGTACAGAGCAGGGATTTTGCTTCCTATTTATTCTATTACAGAAAATACCTCACTTCCTTAGTACAGGCGAAGTCGGTTCCCTCGTACGAGGGAAGGCTCTTCTCCTTACCGAGAGAAGAGCCTTCGCCTTAGGCAGTGAAGTGTCTTCCTCTTATAAAGCGACCGCCCTTCCTTAGCATTAAGGAAGGGCGGTCTTTATTTAGAAGTGCCAAAAACACACTACACAATAGTAATAGGCGTGCTTAGTGTTTCGGTTCGGGGTTCTTTCAGTAAGGTAGTGCCTTTACTGCTTTGCGTGGTGATGCTGAGTTCATAGTTACCCGCTTCTAAATCTGTAGGAACGAGAATGAGTAACCTTGACGGCTCATTAAGGACAATATGCTCTGCTGAGAGTTTCACTTCTTGCTGAGTGTCTAAGTTTTTAAAGACAATACCGTTTTTAGGGTTGTCCCCATCTATTTTAATG # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-1.45, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGACTGCTCTCACTTTGAAGGGTATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [59-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //